Rh4AG004300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000876
Physical Location & Seq
Reverse (-)
647322 .. 651681
4360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG004300.1

Sequence Viewer

Length: 1350 bp
ATGCCATGTTCAAGATTGTTGATGTTCAGAAATTTTAGGAGAGTTTCAGAGTCGGTTGTTACAAGCCTGAAACCAAGCTATCCAGAACCCGGAAAGTATGGAACTATTACTAGAGTTGGCCTTGGTCTTCCCCAATACAGATTCTACACGGACTATATCTTGCCTACTAGAGGGAATAACGCATTATTATTGTTTAATAAAACGAAGAGGAATTATTCCAAGAGTGGTTCTGTCATGACACATCATACCCAACTTGCTTTGAAAAGGCTCTTCGAAAGATTCACTTTAAGTGGTTCTAGATTCCGTCCTGTGAGTAAGTTTGCTCAAGCAGTCGCCTTGTTCATAACTCGGCCTAACTTTTTACTGCCCGGTACTTTTGCCATCACAAGTGGGAAGCTAGCATGGGCCCAGAGGTCTCTGGCAGAAATGGACCAGTCGCAGAATACTATATACATGCGTGCTCAAGATGGACATGCTTTTATGACATCATTACTATTGTCAGCTTTAGAAGGTGTGATATTGTTACTGAGAGCACTCTATCTGGGGATTTTGTTCTCACCCAGCATAGTGATGATGCCTTTCGTCGCTTACTGTGGACCTGAGTTTAGGAGATTGTGGCTTCATGTTGTTCATCGTACTTTGGAAAAAGCAGGTCCAGCTTTCATCAAATGGGGTCAGTGGGCTGCTACACGGCCTGATCTTTTCCCCAGAGACTTATGCATCAAGCTTTCAGAGCTTCACATGAAAGCTCCTGAACATAGCTTTGCCTACACAAAGAAAACTATCGAAGGAGCATTTGGACGCAAGCTCTCTGAGATTTTTGAGAACTTTGAAGAGGAGCCGGTAGCATCTGGAAGTATTGCTCAAGTGCATCGAGCTACTTTGAGATTTCGATACCCAAACCAAGAGGTGAAGCCCATGGTAGTTGCCGTAAAGGTCAGACATCCTGGTGTTAGTGAATCAATTAGGAGAGATTTTGTGATTATCAATTCAGTTGCAAAATTGTCAATGTTCATTCCTACTTTAAAGTGGTGGAGATTAGATGAAAGCGTACAGCAGTTCTCAGTTTTCATGATGTCTCAAGTTGATCTTGCAAGGGAAGCTGCCCATTTGAGCCGTTTTATCTATAATTTCCGTCATCATAAGGATGTCTCTTTTCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTTTTGGTGGAAACTTATGAGCAAGGGGAATGTGTCTCAAACTATCTTCATGAGCTTCCCGGGCAAGATCAGATTAAAGCTGCAGTTGCTCACAGTGGAACAAAGGCATATTTAAAGATGCTTCTGGTAAGATATATATTCTTTGATGTTTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

449

Amino Acids

51.41

Weight (kDa)

9.9

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 246 - 443 1.9e-29 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 3 cut(s) 373, 637, 1053
AfiI CCNNNNNNNGG 2 cut(s) 89, 170
AgsI TTSAA 3 cut(s) 12, 262, 833
AjnI CCWGG 1 cut(s) 946
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
Alw21I GWGCWC 2 cut(s) 463, 535
Alw26I GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
Ama87I CYCGRG 1 cut(s) 1250
AoxI GGCC 4 cut(s) 118, 350, 405, 692
ApaI GGGCCC 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 683, 1103, 1271
ApoI RAATTY 1 cut(s) 31
AspS9I GGNCC 5 cut(s) 405, 406, 430, 596, 653
AsuC2I CCSGG 4 cut(s) 90, 369, 1251, 1252
AsuHPI GGTGA 2 cut(s) 549, 922
AsuII TTCGAA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 3 cut(s) 430, 596, 653
BaeGI GKGCMC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 463, 535
BbvI GCAGC 3 cut(s) 670, 1090, 1258
BccI CCATC 2 cut(s) 389, 461
BceAI ACGGC 3 cut(s) 707, 914, 1101
BciT130I CCWGG 1 cut(s) 948
BciVI GTATCC 1 cut(s) 1182
BcnI CCSGG 4 cut(s) 90, 369, 1251, 1252
BcoDI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BfaI CTAG 5 cut(s) 111, 168, 297, 398, 1344
BfmI CTRYAG 1 cut(s) 1272
BfuAI ACCTGC 1 cut(s) 641
BfuI GTATCC 1 cut(s) 1182
BisI GCNGC 3 cut(s) 684, 1104, 1272
BlsI GCNGC 3 cut(s) 685, 1105, 1273
Bme1390I CCNGG 5 cut(s) 90, 369, 948, 1251, 1252
Bme18I GGWCC 3 cut(s) 430, 596, 653
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 5 cut(s) 405, 406, 430, 596, 653
BmiI GGNNCC 2 cut(s) 407, 840
BmrFI CCNGG 5 cut(s) 90, 369, 948, 1251, 1252
BmsI GCATC 6 cut(s) 564, 729, 857, 880, 1192, 1299
BmtI GCTAGC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 4 cut(s) 309, 447, 849, 1065
BpuMI CCSGG 4 cut(s) 90, 369, 1251, 1252
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 121, 918, 1250
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 170
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 3 cut(s) 121, 918, 1250
BseGI GGATG 3 cut(s) 943, 1153, 1183
BseLI CCNNNNNNNGG 2 cut(s) 89, 170
BseMII CTCAG 4 cut(s) 518, 591, 804, 1077
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 851
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 3 cut(s) 670, 1090, 1258
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 4 cut(s) 120, 352, 407, 694
BsiHKAI GWGCWC 2 cut(s) 463, 535
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 4 cut(s) 90, 369, 842, 1251
BslI CCNNNNNNNGG 2 cut(s) 89, 170
BsmAI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BsnI GGCC 4 cut(s) 120, 352, 407, 694
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 1250
Bsp119I TTCGAA 1 cut(s) 273
Bsp120I GGGCCC 1 cut(s) 405
Bsp1286I GDGCHC 3 cut(s) 409, 463, 535
Bsp143I GATC 3 cut(s) 697, 1087, 1258
Bsp19I CCATGG 1 cut(s) 918
BspANI GGCC 4 cut(s) 120, 352, 407, 694
BspCNI CTCAG 4 cut(s) 519, 592, 805, 1076
BspHI TCATGA 3 cut(s) 234, 1071, 1240
BspLI GGNNCC 2 cut(s) 407, 840
BspMAI CTGCAG 1 cut(s) 1276
BspMI ACCTGC 1 cut(s) 641
BspOI GCTAGC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 3 cut(s) 121, 918, 1250
BssMI GATC 3 cut(s) 697, 1087, 1258
BssT1I CCWWGG 2 cut(s) 121, 918
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 2 cut(s) 593, 1286
Bst6I CTCTTC 3 cut(s) 200, 275, 828
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 399, 459, 806
BstDEI CTNAG 4 cut(s) 527, 600, 813, 1063
BstDSI CCRYGG 1 cut(s) 918
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 943, 1153, 1183
BstKTI GATC 3 cut(s) 700, 1090, 1261
BstMAI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BstMBI GATC 3 cut(s) 697, 1087, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 2 cut(s) 457, 476
BstSCI CCNGG 5 cut(s) 88, 367, 946, 1249, 1250
BstSFI CTRYAG 1 cut(s) 1272
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 670, 1090, 1258
BstV2I GAAGAC 1 cut(s) 119
BsuI GTATCC 1 cut(s) 1182
BsuRI GGCC 4 cut(s) 120, 352, 407, 694
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 3 cut(s) 943, 1153, 1183
BtsIMutI CAGTG 2 cut(s) 683, 1291
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 3 cut(s) 399, 459, 806
CciI TCATGA 3 cut(s) 234, 1071, 1240
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 5 cut(s) 405, 406, 430, 596, 653
Cfr9I CCCGGG 1 cut(s) 1250
CseI GACGC 1 cut(s) 810
Csp6I GTAC 3 cut(s) 372, 636, 1052
CviQI GTAC 3 cut(s) 372, 636, 1052
DdeI CTNAG 4 cut(s) 527, 600, 813, 1063
DpnI GATC 3 cut(s) 699, 1089, 1260
DpnII GATC 3 cut(s) 697, 1087, 1258
DraI TTTAAA 2 cut(s) 1026, 1305
Eam1104I CTCTTC 3 cut(s) 200, 275, 828
EarI CTCTTC 3 cut(s) 200, 275, 828
Eco130I CCWWGG 2 cut(s) 121, 918
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 3 cut(s) 430, 596, 653
Eco88I CYCGRG 1 cut(s) 1250
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 121, 918
EcoT22I ATGCAT 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 121, 918
FalI AAGNNNNNCTT 4 cut(s) 268, 300, 1074, 1106
Fnu4HI GCNGC 3 cut(s) 684, 1104, 1272
FokI GGATG 3 cut(s) 930, 1160, 1170
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 684, 1104, 1272
FspBI CTAG 5 cut(s) 111, 168, 297, 398, 1344
GluI GCNGC 3 cut(s) 684, 1104, 1272
GsaI CCCAGC 1 cut(s) 564
HaeIII GGCC 4 cut(s) 120, 352, 407, 694
HapII CCGG 4 cut(s) 90, 369, 842, 1251
HgaI GACGC 1 cut(s) 810
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 5 cut(s) 50, 141, 279, 300, 959
HpaII CCGG 4 cut(s) 90, 369, 842, 1251
HphI GGTGA 2 cut(s) 549, 922
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 6 cut(s) 29, 49, 733, 814, 941, 1263
Hpy188III TCNNGA 9 cut(s) 12, 83, 235, 297, 464, 752, 852, 1072, 1241
Hpy8I GTNNAC 1 cut(s) 596
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 2 cut(s) 503, 782
HpyCH4III ACNGT 2 cut(s) 593, 1286
HpyCH4V TGCA 6 cut(s) 720, 871, 998, 1094, 1183, 1274
HpyF10VI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
HpyF3I CTNAG 4 cut(s) 527, 600, 813, 1063
Kzo9I GATC 3 cut(s) 697, 1087, 1258
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 754, 791, 838
Lsp1109I GCAGC 3 cut(s) 670, 1090, 1258
LweI GCATC 6 cut(s) 564, 729, 857, 880, 1192, 1299
MaeI CTAG 5 cut(s) 111, 168, 297, 398, 1344
MaeIII GTNAC 2 cut(s) 58, 522
MalI GATC 3 cut(s) 699, 1089, 1260
MboI GATC 3 cut(s) 697, 1087, 1258
MboII GAAGA 5 cut(s) 119, 217, 262, 845, 1229
MhlI GDGCHC 3 cut(s) 409, 463, 535
MluCI AATT 6 cut(s) 31, 211, 963, 988, 1001, 1129
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 5 cut(s) 164, 201, 405, 829, 901
Mph1103I ATGCAT 1 cut(s) 722
MseI TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1348
MslI CAYNNNNRTG 3 cut(s) 569, 948, 1146
MspI CCGG 4 cut(s) 90, 369, 842, 1251
MspR9I CCNGG 5 cut(s) 90, 369, 948, 1251, 1252
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
NciI CCSGG 4 cut(s) 90, 369, 1251, 1252
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 697, 1087, 1258
NheI GCTAGC 1 cut(s) 397
NlaIV GGNNCC 2 cut(s) 407, 840
NmeAIII GCCGAG 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 2 cut(s) 457, 476
NspV TTCGAA 1 cut(s) 273
PagI TCATGA 3 cut(s) 234, 1071, 1240
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 4 cut(s) 141, 279, 300, 959
PkrI GCNGC 3 cut(s) 685, 1105, 1273
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 946
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 2 cut(s) 407, 840
PspOMI GGGCCC 1 cut(s) 405
PspPI GGNCC 5 cut(s) 405, 406, 430, 596, 653
PstI CTGCAG 1 cut(s) 1276
RsaI GTAC 3 cut(s) 373, 637, 1053
RsaNI GTAC 3 cut(s) 372, 636, 1052
RseI CAYNNNNRTG 3 cut(s) 569, 948, 1146
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1348
SatI GCNGC 3 cut(s) 684, 1104, 1272
Sau3AI GATC 3 cut(s) 697, 1087, 1258
Sau96I GGNCC 5 cut(s) 405, 406, 430, 596, 653
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 5 cut(s) 90, 369, 948, 1251, 1252
SduI GDGCHC 3 cut(s) 409, 463, 535
SfaNI GCATC 6 cut(s) 564, 729, 857, 880, 1192, 1299
SfcI CTRYAG 1 cut(s) 1272
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 3 cut(s) 430, 596, 653
SmaI CCCGGG 1 cut(s) 1252
SmiMI CAYNNNNRTG 3 cut(s) 569, 948, 1146
SmlI CTYRAG 4 cut(s) 324, 462, 864, 1080
SmoI CTYRAG 4 cut(s) 324, 462, 864, 1080
Sse9I AATT 6 cut(s) 31, 211, 963, 988, 1001, 1129
SspMI CTAG 5 cut(s) 111, 168, 297, 398, 1344
StyD4I CCNGG 5 cut(s) 88, 367, 946, 1249, 1250
StyI CCWWGG 2 cut(s) 121, 918
TaaI ACNGT 2 cut(s) 593, 1286
TaqI TCGA 4 cut(s) 273, 786, 874, 892
TasI AATT 6 cut(s) 31, 211, 963, 988, 1001, 1129
TfiI GAWTC 4 cut(s) 141, 279, 300, 959
Tru1I TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1348
Tru9I TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1348
TscAI CASTG 2 cut(s) 683, 1291
TseI GCWGC 3 cut(s) 683, 1103, 1271
TspDTI ATGAA 9 cut(s) 331, 611, 620, 652, 758, 1003, 1059, 1060, 1229
TspGWI ACGGA 3 cut(s) 164, 293, 1124
TspMI CCCGGG 1 cut(s) 1250
TspRI CASTG 2 cut(s) 683, 1291
VpaK11BI GGWCC 3 cut(s) 430, 596, 653
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 2 cut(s) 457, 476
XmaI CCCGGG 1 cut(s) 1250
XspI CTAG 5 cut(s) 111, 168, 297, 398, 1344
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.