Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000876

Physical Location & Seq

Genomic Coordinates Forward (+)

1037991 .. 1039977

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACACATCATACCCAACTTGCTTTGAAAAGGCTCTTCGAAAGATTCACTTTAAGTGGTTCTAGATTCCGTCCTGTGAGTAAGTTTGCTCAAGCAGTCGCCTTGTTCATAACTCGGCCTAACTTTTTACTGCCCGGTACTTTTGCCATCACAAGTGGGAAGCTAGCATGGGCACAGAGGTCTCTGGCAGAAATGGACCAGTCGCAGAATACTATATACATGCGTGCTCAAGATGGACATGCTTTTATCACATCATTACTATTGTCGGCTTTAGAAGGTGTGATATTGTTACTGAGAGCACTCTATCTGGGGATTTTGTTCTCACCCTGTATAGTGATGATGCCTTTCGTCGCTTACTGTGGACCTGAGTTTAGGAGATTGTGGCTTCATGTTGTTCATCGTACTTTGGAAAAAGCAGATGAAAGCGTACAGCAGTTCTCAGTTTTCATGATGTCTCAAGTTGATCTTGCAAGGGAAGCTGCCCATTTGAGCCGTTTTATCTATAATTTCCGTCATCATAAGGATGTCTCTTTTCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTTTTGGTGGAAACTTATGAGCAAGGGGAATGTGTCTCAAACTATCTTCATGAGCTTCCCGGGCAAGATCAGATTAAAGCTGCAGTTGCTCACAGTGGAACAAAGGCATATTTAAAGATGCTTCTGGTGGACAACTATATACATGCGGACATGCATCCTGGAAATATCCTTGTCCGGGTGCCTCAGAGCAACTCTTTTTGGAAGAAACTCTTCAAGTTAAAGCCTCATGTCATTTTTCTTGATGTAGGCATGACTGCTGAACTCTCTAGAACTGACCAAGTAAATTTAGTTGGACTTTTCAAGGCTATCGCTCGTCATGATGGAGGCACTGCCGCTGAGTGCACGCTCAGACTATCTAATCAACAGAAATGCCCAAATCCGGAAGCTTTCATTGAGACAAATGCAATTCCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

327

Amino Acids

37.01

Weight (kDa)

9.16

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	130 - 299	5.5e-21	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11390 AT1G61640 AT1G61640 AT1G61640
fragaria_vesca	FvH4_3g03770 FvH4_3g03770 FvH4_3g03770 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_4g00400 FvH4_4g00400 FvH4_4g00400
malus_domestica	MD05G1326600.v1.1 MD10G1304700.v1.1 MD11G1235000.v1.1
prunus_persica	Prupe.4G034900_v2.0.a1 Prupe.4G034900_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1
pyrus_communis	pycom10g25710 pycom11g20660
rosa_chinensis	RchiOBHm_Chr4g0385351 RchiOBHm_Chr5g0005981 RchiOBHm_Chr5g0036231
rosa_laevigata	RLG00000010235 RLG00000031339 RLG00000031351 RLG00000031384 RLG00000031390 RLG00000033680
rosa_multiflora	Rmu_co8474727.1_g000001 Rmu_sc0000247.1_g000006 Rmu_sc0001259.1_g000007 Rmu_sc0002694.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044550 Rroxscaffold_1G00069980 Rroxscaffold_1G00070010 Rroxscaffold_5G00333280
rosa_rugosa	Rorug03G0300500 Rorug04G0419000 Rorug04G0419100 Rorug05G0154200
rosa_samantha	Rh4AG004300 Rh4BG003700 Rh4CG005400 Rh4DG003900 Rh5AG046400 Rh5AG247900 Rh5BG045300 Rh5BG248500 Rh5CG054000 Rh5CG279800 Rh5DG044900 Rh5DG256800
rosa_wichuraiana	Rw4G000440 Rw4G000470 Rw5G004670 Rw5G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	745
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	2 cut(s)	713, 900
AcsI	RAATTY	1 cut(s)	850
AfaI	GTAC	3 cut(s)	139, 403, 429
AfiI	CCNNNNNNNGG	2 cut(s)	742, 946
AgsI	TTSAA	3 cut(s)	28, 781, 868
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	5 cut(s)	163, 479, 622, 647, 953
AluI	AGCT	5 cut(s)	163, 479, 622, 647, 953
Alw21I	GWGCWC	3 cut(s)	229, 301, 911
Alw26I	GTCTC	5 cut(s)	186, 459, 532, 607, 956
Alw44I	GTGCAC	1 cut(s)	907
Ama87I	CYCGRG	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	907
ApeKI	GCWGC	2 cut(s)	479, 647
ApoI	RAATTY	1 cut(s)	850
Asp700I	GAANNNNTTC	1 cut(s)	776
AspS9I	GGNCC	2 cut(s)	196, 362
AsuC2I	CCSGG	4 cut(s)	135, 627, 628, 743
AsuHPI	GGTGA	1 cut(s)	315
AsuII	TTCGAA	1 cut(s)	39
AsuNHI	GCTAGC	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	196, 362
BaeGI	GKGCMC	2 cut(s)	175, 911
BanI	GGYRCC	1 cut(s)	745
Bbv12I	GWGCWC	3 cut(s)	229, 301, 911
BbvI	GCAGC	2 cut(s)	466, 634
BccI	CCATC	3 cut(s)	155, 227, 881
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	558
BcnI	CCSGG	4 cut(s)	135, 627, 628, 743
BcoDI	GTCTC	5 cut(s)	186, 459, 532, 607, 956
BfaI	CTAG	3 cut(s)	63, 164, 834
BfmI	CTRYAG	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	3 cut(s)	480, 648, 900
BlsI	GCNGC	3 cut(s)	481, 649, 901
Bme1390I	CCNGG	5 cut(s)	135, 627, 628, 726, 743
Bme18I	GGWCC	2 cut(s)	196, 362
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	196, 362
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	5 cut(s)	135, 627, 628, 726, 743
BmsI	GCATC	4 cut(s)	330, 568, 675, 730
BmtI	GCTAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	75, 213, 441
BpuMI	CCSGG	4 cut(s)	135, 627, 628, 743
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	2 cut(s)	742, 946
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	3 cut(s)	529, 559, 721
BseLI	CCNNNNNNNGG	2 cut(s)	742, 946
BseMII	CTCAG	6 cut(s)	284, 357, 453, 764, 894, 928
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	2 cut(s)	175, 911
BseXI	GCAGC	2 cut(s)	466, 634
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	745
BsiHKAI	GWGCWC	3 cut(s)	229, 301, 911
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	4 cut(s)	135, 627, 742, 947
BslI	CCNNNNNNNGG	2 cut(s)	742, 946
BsmAI	GTCTC	5 cut(s)	186, 459, 532, 607, 956
BsnI	GGCC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	4 cut(s)	175, 229, 301, 911
Bsp13I	TCCGGA	1 cut(s)	946
Bsp143I	GATC	2 cut(s)	463, 634
BspACI	CCGC	2 cut(s)	713, 900
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	6 cut(s)	285, 358, 452, 763, 895, 927
BspEI	TCCGGA	1 cut(s)	946
BspHI	TCATGA	3 cut(s)	447, 616, 883
BspLI	GGNNCC	1 cut(s)	747
BspMAI	CTGCAG	1 cut(s)	652
BspOI	GCTAGC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	2 cut(s)	463, 634
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	359, 662
Bst6I	CTCTTC	2 cut(s)	41, 782
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	165, 225, 911
BstDEI	CTNAG	6 cut(s)	293, 366, 439, 750, 903, 914
BstF5I	GGATG	3 cut(s)	529, 559, 721
BstKTI	GATC	2 cut(s)	466, 637
BstMAI	GTCTC	5 cut(s)	186, 459, 532, 607, 956
BstMBI	GATC	2 cut(s)	463, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 628, 653
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	4 cut(s)	223, 242, 713, 721
BstSCI	CCNGG	5 cut(s)	133, 625, 626, 724, 741
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	2 cut(s)	175, 911
BstV1I	GCAGC	2 cut(s)	466, 634
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	529, 559, 721
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	2 cut(s)	667, 894
Cac8I	GCNNGC	3 cut(s)	165, 225, 911
CciI	TCATGA	3 cut(s)	447, 616, 883
Cfr13I	GGNCC	2 cut(s)	196, 362
Cfr9I	CCCGGG	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	138, 402, 428
CviQI	GTAC	3 cut(s)	138, 402, 428
DdeI	CTNAG	6 cut(s)	293, 366, 439, 750, 903, 914
DpnI	GATC	2 cut(s)	465, 636
DpnII	GATC	2 cut(s)	463, 634
DraI	TTTAAA	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	41, 782
EarI	CTCTTC	2 cut(s)	41, 782
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	196, 362
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	724
EcoT22I	ATGCAT	1 cut(s)	723
FalI	AAGNNNNNCTT	6 cut(s)	34, 66, 450, 482, 761, 793
Fnu4HI	GCNGC	3 cut(s)	480, 648, 900
FokI	GGATG	3 cut(s)	536, 546, 708
Fsp4HI	GCNGC	3 cut(s)	480, 648, 900
FspBI	CTAG	3 cut(s)	63, 164, 834
GluI	GCNGC	3 cut(s)	480, 648, 900
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	4 cut(s)	135, 627, 742, 947
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	2 cut(s)	45, 66
HpaII	CCGG	4 cut(s)	135, 627, 742, 947
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	362, 697, 909
Hpy188I	TCNGA	3 cut(s)	639, 753, 917
Hpy188III	TCNNGA	8 cut(s)	63, 230, 448, 617, 806, 834, 884, 947
Hpy8I	GTNNAC	3 cut(s)	362, 697, 909
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	359, 662
HpyCH4V	TGCA	6 cut(s)	470, 559, 650, 721, 909, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 628, 653
HpyF3I	CTNAG	6 cut(s)	293, 366, 439, 750, 903, 914
Kpn2I	TCCGGA	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	463, 634
LguI	GCTCTTC	1 cut(s)	41
Lsp1109I	GCAGC	2 cut(s)	466, 634
LweI	GCATC	4 cut(s)	330, 568, 675, 730
MaeI	CTAG	3 cut(s)	63, 164, 834
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	2 cut(s)	465, 636
MboI	GATC	2 cut(s)	463, 634
MboII	GAAGA	4 cut(s)	28, 605, 769, 781
MhlI	GDGCHC	4 cut(s)	175, 229, 301, 911
MluCI	AATT	3 cut(s)	505, 850, 972
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	4 cut(s)	171, 759, 801, 884
Mph1103I	ATGCAT	1 cut(s)	723
MroI	TCCGGA	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	4 cut(s)	53, 642, 680, 785
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	4 cut(s)	135, 627, 742, 947
MspR9I	CCNGG	5 cut(s)	135, 627, 628, 726, 743
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	3 cut(s)	476, 628, 653
NciI	CCSGG	4 cut(s)	135, 627, 628, 743
NdeII	GATC	2 cut(s)	463, 634
NheI	GCTAGC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	747
NmeAIII	GCCGAG	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	4 cut(s)	223, 242, 713, 721
NspV	TTCGAA	1 cut(s)	39
PagI	TCATGA	3 cut(s)	447, 616, 883
PciSI	GCTCTTC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	2 cut(s)	45, 66
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	3 cut(s)	481, 649, 901
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	196, 362
PstI	CTGCAG	1 cut(s)	652
RsaI	GTAC	3 cut(s)	139, 403, 429
RsaNI	GTAC	3 cut(s)	138, 402, 428
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	53, 642, 680, 785
SatI	GCNGC	3 cut(s)	480, 648, 900
Sau3AI	GATC	2 cut(s)	463, 634
Sau96I	GGNCC	2 cut(s)	196, 362
ScrFI	CCNGG	5 cut(s)	135, 627, 628, 726, 743
SduI	GDGCHC	4 cut(s)	175, 229, 301, 911
SetI	ASST	8 cut(s)	165, 182, 280, 367, 481, 624, 649, 955
SfaNI	GCATC	4 cut(s)	330, 568, 675, 730
SfcI	CTRYAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	196, 362
SmaI	CCCGGG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	90, 228, 456
SmoI	CTYRAG	3 cut(s)	90, 228, 456
Sse9I	AATT	3 cut(s)	505, 850, 972
SsiI	CCGC	2 cut(s)	713, 900
SspMI	CTAG	3 cut(s)	63, 164, 834
StyD4I	CCNGG	5 cut(s)	133, 625, 626, 724, 741
TaaI	ACNGT	2 cut(s)	359, 662
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	505, 850, 972
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	45, 66
Tru1I	TTAA	4 cut(s)	53, 642, 680, 785
Tru9I	TTAA	4 cut(s)	53, 642, 680, 785
TscAI	CASTG	2 cut(s)	667, 901
TseI	GCWGC	2 cut(s)	479, 647
TspDTI	ATGAA	7 cut(s)	97, 377, 386, 435, 436, 605, 946
TspGWI	ACGGA	2 cut(s)	59, 500
TspMI	CCCGGG	1 cut(s)	626
TspRI	CASTG	2 cut(s)	667, 901
VneI	GTGCAC	1 cut(s)	907
VpaK11BI	GGWCC	2 cut(s)	196, 362
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	2 cut(s)	62, 833
XceI	RCATGY	4 cut(s)	223, 242, 713, 721
XmaI	CCCGGG	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	3 cut(s)	63, 164, 834
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.