Rh5DG256800

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000876
Physical Location & Seq
Forward (+)
30248121 .. 30256934
8814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG256800.1

Sequence Viewer

Length: 1518 bp
ATGCTCTGCCGGTTATTTTTGAGAAATAAACATTCTGTAAGAGGGCAATCCCCATTTCTGCTGCATAGAGCAAAAGATAAGTTTTTGAATAGTAGTGGTTATAGGAACTTGTATACCATATCAGCAAGGAGTGCAGCTTCTCAACATGCCCAGTTTGCTTGGAGAAAGCTTTCTCACTTGTATTTCTATCGGCAAACAACCTTCCCCCCAATAGGTCGAATTGCCCGTGCTGTGAGCTTGGCCTTGACCCGCTCAAATTTAGTAGCTCCTGGTGTTTTTTCCTTTGTAGTTGGAGAGTTTGTTCGGGCGCAGCGTACATGTGCAGAAGCAGAAGGCCTCCCAACAAAGGACACTTTATATATTCATGCCCAAGATGGACATATTTATTTGGCCTTATTTTTGGTTTCACTTCTGGAGTGTATTATCTTGTTTGTCAGAGCAATTTATCTAGCAGTTTTATTCTCACCGTGTATAGCCATGTCACTTTTTAAGGATTCCCTCGGCCCCCGGTTTAGGAAAAAATGGCTTCATGCTGTTCATCATTCACTGGAAAAAGCAGGCCCAGCGTTTATAAAATGGGGTCAATGGGCTGCTGCAAGGCCAGATCTCTTCCCAAGAGATTTGTGTGCTGAACTTGAGAAACTCCACACTAAAGCTCCAGCACATAGTTTTGACTTTACCAAAAATAGTATTGAAAAGGCATTTGGTCGCAAGCTGCCTGAAATATTTGAAAAATTTGATGAGGAACCTGTGGCATCGGGAAGTGTTGCTCAAGTTCATCAAGCTATACTCAAATACAGATACCCGGGTCAGAAGATCAAGCCCATTTTAGTTGCTGTTAAGGTTAGACATCCAGGTGTTGGTGAAGCAATTAGGAGGGATTTTGTGATAATCAATTCTGTAGCCAAAATTTCAAGGTTCATCCCTTCTTTGAAATTGTGGAGCTTGGATGAAAGCCTAAAGCAATTTGCCGTTTACATGATGTCACAAGTTGATCTGTCAAGGGAAGCTGCACATTTGAGTCGTTTTAGCTATAACTTTCGAAGATCGAAAGATGTCTCATTTCCAAGGCCTCTATACCCCTTGGTGCACCCATCTGTTTTAGTCGAAACGTACGAGCAGGGTGAAAGTGTTCAGCACTACGTCGATGAACTTGAGGGCAATGAACCGATAAAAAATGCCCTTGCTCAGATTGGAACCAATGCACTACTGAAGATGCTTCTGGTAGATAATTTTATTCATGCTGACATGCATCCTGGAAATATTCTTGTCCGAGTAACCCGTAGTAAGGTTCCAAGTAAAGAACTCTTTAGATTGAGGCCTCATGTTGTTTTCCTTGATGTGGGCTTGACTGCCGAACTTTCTAAGAGGGATCGACTGAATTTAGTGGAGTTGTTTAAGGCTGTGGCCCTTCGTGACGGTCAAAGTGTTGCGGAGTGCACACTTAGATTATCTGGACAGCAAAACTGCCCAAATCCAAGTGCTTTTATTGAGGTAAATTGTTTGTTCTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

505

Amino Acids

57.28

Weight (kDa)

9.72

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 214 - 479 5.5e-47 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 860
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 113
AciI CCGC 2 cut(s) 250, 1433
AclWI GGATC 1 cut(s) 1380
AcsI RAATTY 4 cut(s) 256, 734, 909, 1381
AcuI CTGAAG 1 cut(s) 1232
AfaI GTAC 2 cut(s) 316, 1115
AfiI CCNNNNNNNGG 6 cut(s) 212, 346, 513, 860, 1288, 1342
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 5 cut(s) 88, 695, 731, 915, 934
AjnI CCWGG 3 cut(s) 268, 853, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
Alw21I GWGCWC 2 cut(s) 1092, 1442
Alw26I GTCTC 1 cut(s) 1063
Alw44I GTGCAC 2 cut(s) 1088, 1438
AlwI GGATC 1 cut(s) 1380
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 9 cut(s) 240, 334, 390, 502, 559, 599, 1070, 1319, 1407
ApaLI GTGCAC 2 cut(s) 1088, 1438
ApeKI GCWGC 7 cut(s) 61, 134, 310, 590, 593, 715, 1010
ApoI RAATTY 4 cut(s) 256, 734, 909, 1381
Asp700I GAANNNNTTC 2 cut(s) 169, 1131
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 503, 560, 1408
AsuC2I CCSGG 3 cut(s) 508, 806, 807
AsuHPI GGTGA 3 cut(s) 456, 875, 1136
AsuII TTCGAA 1 cut(s) 1042
AvaI CYCGRG 1 cut(s) 805
BaeGI GKGCMC 2 cut(s) 1092, 1442
BaeI ACNNNNGTAYC 2 cut(s) 793, 826
Bbv12I GWGCWC 2 cut(s) 1092, 1442
BbvI GCAGC 7 cut(s) 48, 146, 322, 577, 580, 702, 997
BccI CCATC 2 cut(s) 368, 1102
BceAI ACGGC 1 cut(s) 956
BciT130I CCWGG 3 cut(s) 270, 855, 1257
BcnI CCSGG 3 cut(s) 508, 806, 807
BcoDI GTCTC 1 cut(s) 1063
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 900
BglII AGATCT 1 cut(s) 604
BisI GCNGC 7 cut(s) 62, 135, 311, 591, 594, 716, 1011
BlsI GCNGC 7 cut(s) 63, 136, 312, 592, 595, 717, 1012
Bme1390I CCNGG 6 cut(s) 270, 508, 806, 807, 855, 1257
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 3 cut(s) 503, 560, 1408
BmiI GGNNCC 4 cut(s) 505, 747, 1198, 1293
BmrFI CCNGG 6 cut(s) 270, 508, 806, 807, 855, 1257
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 764, 1206, 1261
BmuI ACTGGG 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 434, 642
Bpu14I TTCGAA 1 cut(s) 1042
BpuEI CTTGAG 3 cut(s) 656, 756, 1175
BpuMI CCSGG 3 cut(s) 508, 806, 807
BsaJI CCNNGG 5 cut(s) 499, 506, 805, 1067, 1083
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 640, 670
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 346, 513, 860, 1288, 1342
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 151, 552
Bse3DI GCAATG 1 cut(s) 1168
BseBI CCWGG 3 cut(s) 270, 855, 1257
BseDI CCNNGG 5 cut(s) 499, 506, 805, 1067, 1083
BseGI GGATG 4 cut(s) 850, 921, 955, 1252
BseLI CCNNNNNNNGG 6 cut(s) 212, 346, 513, 860, 1288, 1342
BseMI GCAATG 1 cut(s) 1168
BseMII CTCAG 1 cut(s) 1202
BseNI ACTGG 2 cut(s) 151, 552
BseSI GKGCMC 2 cut(s) 1092, 1442
BseXI GCAGC 7 cut(s) 48, 146, 322, 577, 580, 702, 997
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 3 cut(s) 153, 342, 996
BshFI GGCC 9 cut(s) 242, 336, 392, 504, 561, 601, 1072, 1321, 1409
BsiHKAI GWGCWC 2 cut(s) 1092, 1442
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 10, 508, 806
BsiWI CGTACG 1 cut(s) 1113
BslI CCNNNNNNNGG 6 cut(s) 212, 346, 513, 860, 1288, 1342
BsmAI GTCTC 1 cut(s) 1063
BsnI GGCC 9 cut(s) 242, 336, 392, 504, 561, 601, 1072, 1321, 1409
BsoBI CYCGRG 1 cut(s) 805
Bsp119I TTCGAA 1 cut(s) 1042
Bsp1286I GDGCHC 2 cut(s) 1092, 1442
Bsp143I GATC 5 cut(s) 604, 816, 994, 1046, 1372
BspACI CCGC 2 cut(s) 250, 1433
BspANI GGCC 9 cut(s) 242, 336, 392, 504, 561, 601, 1072, 1321, 1409
BspCNI CTCAG 1 cut(s) 1201
BspLI GGNNCC 4 cut(s) 505, 747, 1198, 1293
BspPI GGATC 1 cut(s) 1380
BspT104I TTCGAA 1 cut(s) 1042
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 1168
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 2 cut(s) 151, 552
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 5 cut(s) 499, 506, 805, 1067, 1083
BssMI GATC 5 cut(s) 604, 816, 994, 1046, 1372
BssNAI GTATAC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 1067, 1083
Bst1107I GTATAC 1 cut(s) 114
Bst2UI CCWGG 3 cut(s) 270, 855, 1257
Bst4CI ACNGT 2 cut(s) 468, 1421
Bst6I CTCTTC 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 1042
BstC8I GCNNGC 2 cut(s) 559, 713
BstDEI CTNAG 3 cut(s) 1188, 1365, 1445
BstF5I GGATG 4 cut(s) 850, 921, 955, 1252
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 607, 819, 997, 1049, 1375
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 5 cut(s) 604, 816, 994, 1046, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 131, 155, 563
BstNI CCWGG 3 cut(s) 270, 855, 1257
BstNSI RCATGY 3 cut(s) 149, 321, 1252
BstSCI CCNGG 6 cut(s) 268, 506, 804, 805, 853, 1255
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 2 cut(s) 1092, 1442
BstV1I GCAGC 7 cut(s) 48, 146, 322, 577, 580, 702, 997
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZ17I GTATAC 1 cut(s) 114
BsuRI GGCC 9 cut(s) 242, 336, 392, 504, 561, 601, 1072, 1321, 1409
BtsCI GGATG 4 cut(s) 850, 921, 955, 1252
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 559, 713
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 503, 560, 1408
Cfr9I CCCGGG 1 cut(s) 805
Csp6I GTAC 2 cut(s) 315, 1114
CviAII CATG 9 cut(s) 146, 318, 365, 478, 530, 979, 1241, 1249, 1325
CviQI GTAC 2 cut(s) 315, 1114
DdeI CTNAG 3 cut(s) 1188, 1365, 1445
DpnI GATC 5 cut(s) 606, 818, 996, 1048, 1374
DpnII GATC 5 cut(s) 604, 816, 994, 1046, 1372
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco130I CCWWGG 2 cut(s) 1067, 1083
Eco147I AGGCCT 3 cut(s) 336, 1072, 1321
Eco57I CTGAAG 1 cut(s) 1232
Eco88I CYCGRG 1 cut(s) 805
EcoRII CCWGG 3 cut(s) 268, 853, 1255
EcoT14I CCWWGG 2 cut(s) 1067, 1083
EcoT22I ATGCAT 1 cut(s) 1254
ErhI CCWWGG 2 cut(s) 1067, 1083
FaeI CATG 9 cut(s) 149, 321, 368, 481, 533, 982, 1244, 1252, 1328
FatI CATG 9 cut(s) 145, 317, 364, 477, 529, 978, 1240, 1248, 1324
FauI CCCGC 1 cut(s) 257
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 7 cut(s) 62, 135, 311, 591, 594, 716, 1011
FokI GGATG 4 cut(s) 837, 908, 962, 1239
Fsp4HI GCNGC 7 cut(s) 62, 135, 311, 591, 594, 716, 1011
FspBI CTAG 1 cut(s) 449
GlaI GCGC 1 cut(s) 309
GluI GCNGC 7 cut(s) 62, 135, 311, 591, 594, 716, 1011
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 2 cut(s) 434, 642
HaeIII GGCC 9 cut(s) 242, 336, 392, 504, 561, 601, 1072, 1321, 1409
HapII CCGG 3 cut(s) 10, 508, 806
HhaI GCGC 1 cut(s) 310
Hin1II CATG 9 cut(s) 149, 321, 368, 481, 533, 982, 1244, 1252, 1328
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 494, 1021
HpaII CCGG 3 cut(s) 10, 508, 806
HphI GGTGA 3 cut(s) 456, 875, 1136
Hpy166II GTNNAC 4 cut(s) 114, 976, 1090, 1440
Hpy188I TCNGA 4 cut(s) 437, 813, 1191, 1274
Hpy188III TCNNGA 5 cut(s) 413, 759, 1415, 1455, 1510
Hpy8I GTNNAC 4 cut(s) 114, 976, 1090, 1440
Hpy99I CGWCG 1 cut(s) 1148
HpyAV CCTTC 4 cut(s) 211, 326, 936, 1421
HpyCH4III ACNGT 2 cut(s) 468, 1421
HpyCH4IV ACGT 2 cut(s) 1112, 1143
HpyCH4V TGCA 9 cut(s) 64, 134, 323, 596, 1013, 1090, 1205, 1252, 1440
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 155, 563
HpyF3I CTNAG 3 cut(s) 1188, 1365, 1445
HpySE526I ACGT 2 cut(s) 1112, 1143
Hsp92II CATG 9 cut(s) 149, 321, 368, 481, 533, 982, 1244, 1252, 1328
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 5 cut(s) 604, 816, 994, 1046, 1372
LmnI GCTCC 3 cut(s) 271, 661, 942
Lsp1109I GCAGC 7 cut(s) 48, 146, 322, 577, 580, 702, 997
LweI GCATC 3 cut(s) 764, 1206, 1261
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 1112, 1143
MaeIII GTNAC 4 cut(s) 480, 984, 1276, 1415
MalI GATC 5 cut(s) 606, 818, 996, 1048, 1374
MbiI CCGCTC 1 cut(s) 252
MboI GATC 5 cut(s) 604, 816, 994, 1046, 1372
MboII GAAGA 4 cut(s) 601, 826, 1056, 1225
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 1092, 1442
MlyI GAGTC 1 cut(s) 1030
MmeI TCCRAC 1 cut(s) 271
Mph1103I ATGCAT 1 cut(s) 1254
MroXI GAANNNNTTC 2 cut(s) 169, 1131
MseI TTAA 3 cut(s) 489, 840, 1398
MslI CAYNNNNRTG 1 cut(s) 855
MspI CCGG 3 cut(s) 10, 508, 806
MspR9I CCNGG 6 cut(s) 270, 508, 806, 807, 855, 1257
MvaI CCWGG 3 cut(s) 270, 855, 1257
MwoI GCNNNNNNNGC 3 cut(s) 131, 155, 563
NciI CCSGG 3 cut(s) 508, 806, 807
NdeII GATC 5 cut(s) 604, 816, 994, 1046, 1372
NlaIII CATG 9 cut(s) 149, 321, 368, 481, 533, 982, 1244, 1252, 1328
NlaIV GGNNCC 4 cut(s) 505, 747, 1198, 1293
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 3 cut(s) 480, 984, 1415
NsiI ATGCAT 1 cut(s) 1254
NspI RCATGY 3 cut(s) 149, 321, 1252
NspV TTCGAA 1 cut(s) 1042
PceI AGGCCT 3 cut(s) 336, 1072, 1321
PciI ACATGT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 3 cut(s) 223, 310, 1113
PdmI GAANNNNTTC 2 cut(s) 169, 1131
PfeI GAWTC 1 cut(s) 494
Pfl23II CGTACG 1 cut(s) 1113
PflMI CCANNNNNTGG 1 cut(s) 860
PfoI TCCNGGA 1 cut(s) 1255
PkrI GCNGC 7 cut(s) 63, 136, 312, 592, 595, 717, 1012
PleI GAGTC 1 cut(s) 1029
PpsI GAGTC 1 cut(s) 1029
PscI ACATGT 1 cut(s) 317
PsiI TTATAA 1 cut(s) 572
Psp6I CCWGG 3 cut(s) 268, 853, 1255
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 3 cut(s) 268, 853, 1255
PspLI CGTACG 1 cut(s) 1113
PspN4I GGNNCC 4 cut(s) 505, 747, 1198, 1293
PspPI GGNCC 3 cut(s) 503, 560, 1408
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 2 cut(s) 316, 1115
RsaNI GTAC 2 cut(s) 315, 1114
RseI CAYNNNNRTG 1 cut(s) 855
SaqAI TTAA 3 cut(s) 489, 840, 1398
SatI GCNGC 7 cut(s) 62, 135, 311, 591, 594, 716, 1011
Sau3AI GATC 5 cut(s) 604, 816, 994, 1046, 1372
Sau96I GGNCC 3 cut(s) 503, 560, 1408
SchI GAGTC 1 cut(s) 1030
ScrFI CCNGG 6 cut(s) 270, 508, 806, 807, 855, 1257
SduI GDGCHC 2 cut(s) 1092, 1442
SfaNI GCATC 3 cut(s) 764, 1206, 1261
SfcI CTRYAG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 1042
SmaI CCCGGG 1 cut(s) 807
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 3 cut(s) 635, 771, 1154
SmoI CTYRAG 3 cut(s) 635, 771, 1154
SseBI AGGCCT 3 cut(s) 336, 1072, 1321
SsiI CCGC 2 cut(s) 250, 1433
SspI AATATT 2 cut(s) 726, 1264
SspMI CTAG 1 cut(s) 449
StuI AGGCCT 3 cut(s) 336, 1072, 1321
StyD4I CCNGG 6 cut(s) 268, 506, 804, 805, 853, 1255
StyI CCWWGG 2 cut(s) 1067, 1083
TaaI ACNGT 2 cut(s) 468, 1421
TaiI ACGT 2 cut(s) 1115, 1146
TaqI TCGA 6 cut(s) 217, 1042, 1049, 1107, 1146, 1375
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 3 cut(s) 489, 840, 1398
Tru9I TTAA 3 cut(s) 489, 840, 1398
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 3 cut(s) 480, 984, 1415
TseI GCWGC 7 cut(s) 61, 134, 310, 590, 593, 715, 1010
Tsp45I GTSAC 3 cut(s) 480, 984, 1415
TspDTI ATGAA 9 cut(s) 353, 518, 527, 767, 910, 966, 1164, 1179, 1229
TspMI CCCGGG 1 cut(s) 805
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 860
VneI GTGCAC 2 cut(s) 1088, 1438
XapI RAATTY 4 cut(s) 256, 734, 909, 1381
XceI RCATGY 3 cut(s) 149, 321, 1252
XmaI CCCGGG 1 cut(s) 805
XmiI GTMKAC 1 cut(s) 113
XmnI GAANNNNTTC 2 cut(s) 169, 1131
XspI CTAG 1 cut(s) 449
Zsp2I ATGCAT 1 cut(s) 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.