Rorug04G0419000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000876
Physical Location & Seq
Reverse (-)
57968529 .. 57970801
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0419000.1

Sequence Viewer

Length: 1173 bp
ATGGCATACCCAGAAGAAGAACATCCTCGGCTTCTTCTCCACAACTTCCTTTCTGTCCAGGAATGCAAGGAACTGGAATATATACACAAAAGCAATTGCACTGTGGGTTACAGACCCAATGTCTTCTCAACTACTCTTTCACATCTCATAGCCACCAACTGTGCCCATCTCATCATGCCCTTCGTCCCCATCAGAGAGAGGTTGAAGGAGAAGGTAGAGGAATTCTTTGGCTGCGAGTATGAACTCTTTGTTGAATTCACCGGTTTGATCAGCTGGAGTAGAGGATCAAGCATTGGGTGGCATAGTGATGACAACAGGCCCTATCTCAAACAGCGTGACTTTGCGGCAGTTTGTTATTTGAACAATTATGGGGATGATTTCAAAGGTGGACTTTTTCACTTCCAGGATGGGGATCTAACAACTATTGTTCCATCAAGTGGGGATGTTGTGATATACACAGCTGACAGCCGCAACACTCATTCTGTTGATGAGATAACTGATGGGGAAAGGCTCACAATGGCATTATGGTTCAGTCGTGATGCAGCCCATGATGAAGATGCTAAACTTATTTCGCTTCTCTCTCAGACTTCATTACGAGATAATGGTCCTGAATTATGGCTACCTTTGCCAGCATCGAGTAATATGTACTGGTTTTCACCAGAACAAGCTTCGTCTCATGATCAGTTGGGATTTGATATATGCTGTGCAAGACTGCATGTTCTTGGATATGATGTAGTATTCTCTGAAGACAAGATCTCCTGTTCGAATATTTCTGAGTTACAGATGGAGAAGTTGCGATTAGCAAGGGGAGATGAGTTGTTTGACTATGAGTTTGTCAACATCTTGCACGCACTTCAGGTAGTGCAATTCTACTGTTGCAAAGCTTCTGATCTGAAATCTACTAAAGTAGAAGATAGCAATAAGGTGGTACTCTTATTGCAATCACAGCGGGAGAAATCTCTCTGCCTCAAGTCTTTATTTCTGAAGGATCTTCATCTAGCGGAGTCTGTATTTTCTGCTGAGAGTGCAAAACATCCCAATTGGGCCCATCTTACAGTTGCAGTTGCTATGTGGGAACATTATGCTCACAGGTTACATAAAGAACTGGTAATGTGCTTACCTCACTGGAAAACACATCAATCTATATTTCATGTATCATTTGATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

390

Amino Acids

44.81

Weight (kDa)

5.44

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_3 PF13640 93 - 177 1.4e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 4 cut(s) 344, 469, 949, 1001
AclWI GGATC 3 cut(s) 292, 420, 996
AcsI RAATTY 2 cut(s) 221, 254
AcuI CTGAAG 3 cut(s) 765, 839, 1004
AfaI GTAC 2 cut(s) 647, 930
AfiI CCNNNNNNNGG 2 cut(s) 409, 437
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 4 cut(s) 205, 254, 361, 382
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 57, 402
AluBI AGCT 4 cut(s) 273, 461, 668, 884
AluI AGCT 4 cut(s) 273, 461, 668, 884
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 3 cut(s) 292, 420, 996
AoxI GGCC 2 cut(s) 317, 1044
ApaI GGGCCC 1 cut(s) 1048
ApeKI GCWGC 2 cut(s) 231, 542
ApoI RAATTY 2 cut(s) 221, 254
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
AsiGI ACCGGT 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 318, 605, 1044, 1045
AsuHPI GGTGA 2 cut(s) 250, 648
AsuII TTCGAA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 605
BaeGI GKGCMC 2 cut(s) 166, 1048
BanII GRGCYC 1 cut(s) 1048
BbsI GAAGAC 2 cut(s) 115, 753
BbvI GCAGC 2 cut(s) 218, 554
BccI CCATC 7 cut(s) 174, 197, 401, 439, 494, 778, 1056
BciT130I CCWGG 2 cut(s) 59, 404
BclI TGATCA 2 cut(s) 267, 679
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 1 cut(s) 998
BglII AGATCT 1 cut(s) 753
BisI GCNGC 4 cut(s) 232, 345, 469, 543
BlsI GCNGC 4 cut(s) 233, 346, 470, 544
Bme1390I CCNGG 2 cut(s) 59, 404
Bme18I GGWCC 1 cut(s) 605
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 4 cut(s) 318, 605, 1044, 1045
BmiI GGNNCC 1 cut(s) 1046
BmrFI CCNGG 2 cut(s) 59, 404
BmsI GCATC 3 cut(s) 529, 547, 641
BpiI GAAGAC 2 cut(s) 115, 753
BpmI CTGGAG 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 953
BsaBI GATNNNNATC 2 cut(s) 411, 993
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 437
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 78, 653, 1110, 1130
Bse8I GATNNNNATC 2 cut(s) 411, 993
BseBI CCWGG 2 cut(s) 59, 404
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 5 cut(s) 22, 379, 412, 448, 1033
BseJI GATNNNNATC 2 cut(s) 411, 993
BseLI CCNNNNNNNGG 2 cut(s) 409, 437
BseMII CTCAG 3 cut(s) 596, 765, 1011
BseNI ACTGG 4 cut(s) 78, 653, 1110, 1130
BseSI GKGCMC 2 cut(s) 166, 1048
BseXI GCAGC 2 cut(s) 218, 554
BshFI GGCC 2 cut(s) 319, 1046
BshTI ACCGGT 1 cut(s) 260
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 409, 437
BsmAI GTCTC 1 cut(s) 678
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 319, 1046
Bsp119I TTCGAA 1 cut(s) 764
Bsp120I GGGCCC 1 cut(s) 1044
Bsp1286I GDGCHC 2 cut(s) 166, 1048
Bsp143I GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
BspACI CCGC 4 cut(s) 344, 469, 949, 1001
BspANI GGCC 2 cut(s) 319, 1046
BspCNI CTCAG 3 cut(s) 595, 766, 1012
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 1046
BspPI GGATC 3 cut(s) 292, 420, 996
BspT104I TTCGAA 1 cut(s) 764
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 4 cut(s) 78, 653, 1110, 1130
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
Bst2UI CCWGG 2 cut(s) 59, 404
Bst4CI ACNGT 4 cut(s) 103, 161, 875, 1057
BstBI TTCGAA 1 cut(s) 764
BstC8I GCNNGC 2 cut(s) 630, 849
BstDEI CTNAG 3 cut(s) 582, 774, 1020
BstF5I GGATG 5 cut(s) 22, 379, 412, 448, 1033
BstKTI GATC 7 cut(s) 270, 287, 415, 682, 756, 892, 991
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
BstMWI GCNNNNNNNGC 3 cut(s) 625, 946, 1025
BstNI CCWGG 2 cut(s) 59, 404
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 57, 402
BstSLI GKGCMC 2 cut(s) 166, 1048
BstV1I GCAGC 2 cut(s) 218, 554
BstV2I GAAGAC 2 cut(s) 115, 753
BstX2I RGATCY 3 cut(s) 412, 753, 988
BstYI RGATCY 3 cut(s) 412, 753, 988
BsuRI GGCC 2 cut(s) 319, 1046
BtsCI GGATG 5 cut(s) 22, 379, 412, 448, 1033
BtsIMutI CAGTG 2 cut(s) 99, 1123
Cac8I GCNNGC 2 cut(s) 630, 849
CciI TCATGA 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 318, 605, 1044, 1045
Csp6I GTAC 2 cut(s) 646, 929
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 5 cut(s) 175, 548, 677, 716, 1151
CviQI GTAC 2 cut(s) 646, 929
DdeI CTNAG 3 cut(s) 582, 774, 1020
DpnI GATC 7 cut(s) 269, 286, 414, 681, 755, 891, 990
DpnII GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
DriI GACNNNNNGTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 1048
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 3 cut(s) 765, 839, 1004
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 2 cut(s) 221, 254
EcoRII CCWGG 2 cut(s) 57, 402
EcoT38I GRGCYC 1 cut(s) 1048
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 5 cut(s) 178, 551, 680, 719, 1154
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 174, 547, 676, 715, 1150
FauI CCCGC 1 cut(s) 942
FbaI TGATCA 2 cut(s) 267, 679
Fnu4HI GCNGC 4 cut(s) 232, 345, 469, 543
FokI GGATG 5 cut(s) 9, 386, 419, 455, 1020
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 4 cut(s) 232, 345, 469, 543
FspBI CTAG 1 cut(s) 998
GluI GCNGC 4 cut(s) 232, 345, 469, 543
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 2 cut(s) 319, 1046
HapII CCGG 1 cut(s) 261
Hin1II CATG 5 cut(s) 178, 551, 680, 719, 1154
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 666, 882
HinfI GANTC 1 cut(s) 1004
HpaII CCGG 1 cut(s) 261
HphI GGTGA 2 cut(s) 250, 648
Hpy166II GTNNAC 2 cut(s) 389, 838
Hpy188I TCNGA 7 cut(s) 194, 585, 745, 775, 889, 894, 984
Hpy188III TCNNGA 3 cut(s) 536, 608, 677
Hpy8I GTNNAC 2 cut(s) 389, 838
HpyAV CCTTC 4 cut(s) 190, 199, 205, 979
HpyCH4III ACNGT 4 cut(s) 103, 161, 875, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 625, 946, 1025
HpyF3I CTNAG 3 cut(s) 582, 774, 1020
Hsp92II CATG 5 cut(s) 178, 551, 680, 719, 1154
Ksp22I TGATCA 2 cut(s) 267, 679
Kzo9I GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
Lsp1109I GCAGC 2 cut(s) 218, 554
LweI GCATC 3 cut(s) 529, 547, 641
MaeI CTAG 1 cut(s) 998
MaeIII GTNAC 4 cut(s) 107, 335, 777, 1092
MalI GATC 7 cut(s) 269, 286, 414, 681, 755, 891, 990
MboI GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
MboII GAAGA 8 cut(s) 26, 26, 29, 115, 566, 758, 923, 983
MfeI CAATTG 2 cut(s) 94, 1039
MflI RGATCY 3 cut(s) 412, 753, 988
MhlI GDGCHC 2 cut(s) 166, 1048
MluCI AATT 8 cut(s) 94, 221, 254, 364, 611, 866, 1039, 1168
MlyI GAGTC 1 cut(s) 1013
MnlI CCTC 6 cut(s) 36, 192, 211, 275, 977, 1131
MseI TTAA 1 cut(s) 1171
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 3 cut(s) 273, 461, 949
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 59, 404
MunI CAATTG 2 cut(s) 94, 1039
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 2 cut(s) 59, 404
MwoI GCNNNNNNNGC 3 cut(s) 625, 946, 1025
NdeII GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
NlaIII CATG 5 cut(s) 178, 551, 680, 719, 1154
NlaIV GGNNCC 1 cut(s) 1046
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 764
PagI TCATGA 1 cut(s) 676
PctI GAATGC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 437
PfoI TCCNGGA 2 cut(s) 57, 402
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 4 cut(s) 233, 346, 470, 544
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
Psp6I CCWGG 2 cut(s) 57, 402
PspGI CCWGG 2 cut(s) 57, 402
PspN4I GGNNCC 1 cut(s) 1046
PspOMI GGGCCC 1 cut(s) 1044
PspPI GGNCC 4 cut(s) 318, 605, 1044, 1045
PsuI RGATCY 3 cut(s) 412, 753, 988
PvuII CAGCTG 2 cut(s) 273, 461
RsaI GTAC 2 cut(s) 647, 930
RsaNI GTAC 2 cut(s) 646, 929
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 1171
SatI GCNGC 4 cut(s) 232, 345, 469, 543
Sau3AI GATC 7 cut(s) 267, 284, 412, 679, 753, 889, 988
Sau96I GGNCC 4 cut(s) 318, 605, 1044, 1045
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 2 cut(s) 59, 404
SduI GDGCHC 2 cut(s) 166, 1048
SfaNI GCATC 3 cut(s) 529, 547, 641
SfuI TTCGAA 1 cut(s) 764
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
Sse9I AATT 8 cut(s) 94, 221, 254, 364, 611, 866, 1039, 1168
SsiI CCGC 4 cut(s) 344, 469, 949, 1001
SspI AATATT 1 cut(s) 769
SspMI CTAG 1 cut(s) 998
StyD4I CCNGG 2 cut(s) 57, 402
TaaI ACNGT 4 cut(s) 103, 161, 875, 1057
TaqI TCGA 2 cut(s) 635, 764
TasI AATT 8 cut(s) 94, 221, 254, 364, 611, 866, 1039, 1168
TatI WGTACW 1 cut(s) 645
TauI GCSGC 2 cut(s) 347, 471
Tru1I TTAA 1 cut(s) 1171
Tru9I TTAA 1 cut(s) 1171
TscAI CASTG 2 cut(s) 106, 1130
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 231, 542
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 5 cut(s) 255, 567, 579, 983, 1139
TspRI CASTG 2 cut(s) 106, 1130
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 2 cut(s) 221, 254
XceI RCATGY 1 cut(s) 719
XspI CTAG 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.