Rh5AG046400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000876
Physical Location & Seq
Reverse (-)
3882473 .. 3887267
4795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG046400.1

Sequence Viewer

Length: 1407 bp
ATGTCAAGATTATTGACGTTGAGGAGTTTTAGCAGAGTTGTGAATTCTGTTGTGAAGAGCCAGAAACAGGGCTACACTGAAGCGGCCAAGTATGGAACAGTTGTTAGAATTGGCCTGCGGCTTCCCCAATGCAGGTACTACAGGGAGTATACCTTTCCTAATAGAGGAGAGGCCCGATTCTCATTGTACAATACCACAAAGAGCTTTTGTCAGAGTAGTTATTCCAGGAATTTTTCTACCATCCCAGCGGCAAGGAGTGCCGTGAGACACAATGCACAAATTATATGGAAAAGGCTCTCCAAAAAGTTTTATTCCAATGGTGGTTATAGATTTTCACCAATAGATAGGATTGCTCGAGCATTCAGCTTGGGAATAACTCGCTATGGGTTGTTGTTTCCGGGCGTTTTTGCTGTCTCAAGTGGGAAGCTAGCATGGGCACAGAGGACTTTGGCAGAGAAGGACCACTATGCACCACCGCTACCACAGACTTCCTTGTACACTCGTGCAGAAAATGGACATGCTTTAGTGAGCTCATTAGTATTTTCAGTTGTAGAAGGTATAATCTTGTTGCTGAGAGCAATCTATCTAGGGATCTTGTTCTCACCAAGCATAATGATGGCTCCTTTTGCTGATTCCTGTGGACCTCAGTTTAGGAGATTGTGGCTTCGTGTTGTTCTTCGTACATTGGAAAGAGCAGGTCCTGCTTTCATCAAATGGGGTCAATGGGCAGCCACTCGTCCTGATCTCTTCCCCAGAGATGTATGCACCAAACTTTCCGAGCTTCATACCAAAGCTCCTGAACATAGCTTTGCCTACACGAAGAAGACTATTGAAAAATCATTTGGCCGCAGGCTGCCCGAAATTTTTGAAAACTTTGAAGAGACACCAGTAGCATCTGGGAGTATTGCTCAAGTTCATCGGGCTACTTTGAAATTTCGATACCCTGGTCAACGGGTGAAACCCATAGTAGTTGCAGTTAAGGTTAGACATCCTGGTGTTGGTGAATCAATTAGGAGAGATTTTGTAATAATCAATTTAGTAGCAAAAATGTCAAAGTTCATTCCTACTTTAAAGTGGTGGAGATTGGATGAAAGTGTACAACAGTTTTCAGTTTTTATGATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTTTACTTATAATTTTCGTAGATGGAAGGACGTCTCTTTCCCAAAGCCTTTGTATCCCCTTGTGCATCCTGCTGTTTTAGTGGAAACGTATGAGCAAGGGGAATGCGTCTCACATTATGTTGATGATCTTCAAGGGCATGAACGGATTAAATCTGCACTTGCTCACATTGGAACACATGCACTTCTGAAGATGCTCCTGGTAACGTTCACATATACATTTGATGTTTCTTGCAATAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

468

Amino Acids

53.52

Weight (kDa)

10.15

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 261 - 456 1.6e-30 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1173
AatII GACGTC 1 cut(s) 1197
Acc36I ACCTGC 2 cut(s) 123, 686
AccI GTMKAC 1 cut(s) 149
AciI CCGC 6 cut(s) 83, 118, 248, 476, 847, 1162
AclI AACGTT 1 cut(s) 1367
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 2 cut(s) 84, 844
AcsI RAATTY 4 cut(s) 43, 229, 861, 932
AcuI CTGAAG 2 cut(s) 99, 1370
AcyI GRCGYC 1 cut(s) 1194
AfaI GTAC 5 cut(s) 137, 188, 497, 682, 1098
AfiI CCNNNNNNNGG 5 cut(s) 67, 132, 164, 998, 1141
AgsI TTSAA 5 cut(s) 833, 869, 878, 931, 1295
AjnI CCWGG 4 cut(s) 224, 943, 991, 1359
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 8 cut(s) 204, 366, 427, 531, 781, 794, 807, 1148
AluI AGCT 8 cut(s) 204, 366, 427, 531, 781, 794, 807, 1148
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 6 cut(s) 259, 418, 875, 1128, 1201, 1276
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 4 cut(s) 84, 112, 171, 844
ApeKI GCWGC 3 cut(s) 728, 853, 1148
ApoI RAATTY 4 cut(s) 43, 229, 861, 932
AspS9I GGNCC 4 cut(s) 172, 460, 641, 698
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 4 cut(s) 327, 594, 967, 1013
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 3 cut(s) 460, 641, 698
BaeGI GKGCMC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 931, 964
BanII GRGCYC 1 cut(s) 533
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 830
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 740, 840, 1135
BccI CCATC 3 cut(s) 248, 610, 1179
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 4 cut(s) 226, 945, 993, 1361
BciVI GTATCC 1 cut(s) 1227
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 6 cut(s) 259, 418, 875, 1128, 1201, 1276
BfaI CTAG 2 cut(s) 428, 587
BfmI CTRYAG 1 cut(s) 139
BfuAI ACCTGC 2 cut(s) 123, 686
BfuI GTATCC 1 cut(s) 1227
BisI GCNGC 8 cut(s) 84, 119, 249, 729, 847, 854, 1149, 1162
BlsI GCNGC 8 cut(s) 85, 120, 250, 730, 848, 855, 1150, 1163
Bme1390I CCNGG 5 cut(s) 226, 399, 945, 993, 1361
Bme18I GGWCC 3 cut(s) 460, 641, 698
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 172, 460, 641, 698
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 5 cut(s) 226, 399, 945, 993, 1361
BmsI GCATC 3 cut(s) 902, 1237, 1344
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 830
BplI GAGNNNNNCTC 2 cut(s) 892, 924
BpuEI CTTGAG 3 cut(s) 400, 894, 1110
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 1194
BsaJI CCNNGG 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 132, 164, 998, 1141
Bse1I ACTGG 1 cut(s) 887
BseBI CCWGG 4 cut(s) 226, 945, 993, 1361
BseDI CCNNGG 1 cut(s) 943
BseGI GGATG 4 cut(s) 240, 988, 1093, 1228
BseLI CCNNNNNNNGG 5 cut(s) 67, 132, 164, 998, 1141
BseMII CTCAG 2 cut(s) 563, 659
BseNI ACTGG 1 cut(s) 887
BseRI GAGGAG 2 cut(s) 37, 180
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 3 cut(s) 740, 840, 1135
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 2 cut(s) 525, 1302
BshFI GGCC 4 cut(s) 86, 114, 173, 846
BsiHKAI GWGCWC 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 5 cut(s) 67, 132, 164, 998, 1141
BsmAI GTCTC 6 cut(s) 259, 418, 875, 1128, 1201, 1276
BsmBI CGTCTC 2 cut(s) 1201, 1276
BsmI GAATGC 2 cut(s) 359, 1271
BsnI GGCC 4 cut(s) 86, 114, 173, 846
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 439, 533
Bsp1407I TGTACA 3 cut(s) 186, 495, 1096
Bsp143I GATC 3 cut(s) 591, 742, 1288
BspACI CCGC 6 cut(s) 83, 118, 248, 476, 847, 1162
BspANI GGCC 4 cut(s) 86, 114, 173, 846
BspCNI CTCAG 2 cut(s) 564, 658
BspLI GGNNCC 1 cut(s) 621
BspMI ACCTGC 2 cut(s) 123, 686
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 599
BspQI GCTCTTC 1 cut(s) 50
BsrGI TGTACA 3 cut(s) 186, 495, 1096
BsrI ACTGG 1 cut(s) 887
BssECI CCNNGG 1 cut(s) 943
BssMI GATC 3 cut(s) 591, 742, 1288
BssNAI GTATAC 1 cut(s) 150
BssNI GRCGYC 1 cut(s) 1194
BssSI CACGAG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 4 cut(s) 226, 945, 993, 1361
Bst4CI ACNGT 2 cut(s) 100, 1104
Bst6I CTCTTC 3 cut(s) 50, 752, 873
BstACI GRCGYC 1 cut(s) 1194
BstAPI GCANNNNNTGC 2 cut(s) 257, 701
BstAUI TGTACA 3 cut(s) 186, 495, 1096
BstC8I GCNNGC 3 cut(s) 116, 429, 851
BstDEI CTNAG 2 cut(s) 572, 645
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 240, 988, 1093, 1228
BstKTI GATC 3 cut(s) 594, 745, 1291
BstMAI GTCTC 6 cut(s) 259, 418, 875, 1128, 1201, 1276
BstMBI GATC 3 cut(s) 591, 742, 1288
BstMWI GCNNNNNNNGC 4 cut(s) 257, 626, 701, 1145
BstNI CCWGG 4 cut(s) 226, 945, 993, 1361
BstNSI RCATGY 2 cut(s) 521, 1343
BstSCI CCNGG 5 cut(s) 224, 397, 943, 991, 1359
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 740, 840, 1135
BstV2I GAAGAC 1 cut(s) 830
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BstZ17I GTATAC 1 cut(s) 150
BsuI GTATCC 1 cut(s) 1227
BsuRI GGCC 4 cut(s) 86, 114, 173, 846
BtsCI GGATG 4 cut(s) 240, 988, 1093, 1228
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 2 cut(s) 123, 686
Cac8I GCNNGC 3 cut(s) 116, 429, 851
CaiI CAGNNNCTG 1 cut(s) 701
Cfr13I GGNCC 4 cut(s) 172, 460, 641, 698
CseI GACGC 1 cut(s) 1258
Csp6I GTAC 5 cut(s) 136, 187, 496, 681, 1097
CviAII CATG 4 cut(s) 432, 518, 1301, 1340
CviQI GTAC 5 cut(s) 136, 187, 496, 681, 1097
DdeI CTNAG 2 cut(s) 572, 645
DpnI GATC 3 cut(s) 593, 744, 1290
DpnII GATC 3 cut(s) 591, 742, 1288
DraI TTTAAA 1 cut(s) 1071
EaeI YGGCCR 2 cut(s) 84, 844
Eam1104I CTCTTC 3 cut(s) 50, 752, 873
EarI CTCTTC 3 cut(s) 50, 752, 873
Ecl136II GAGCTC 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 460, 641, 698
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 2 cut(s) 99, 1370
Eco88I CYCGRG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 4 cut(s) 224, 943, 991, 1359
EcoT38I GRGCYC 1 cut(s) 533
Esp3I CGTCTC 2 cut(s) 1201, 1276
FaeI CATG 4 cut(s) 435, 521, 1304, 1343
FalI AAGNNNNNCTT 2 cut(s) 1119, 1151
FatI CATG 4 cut(s) 431, 517, 1300, 1339
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 8 cut(s) 84, 119, 249, 729, 847, 854, 1149, 1162
FokI GGATG 4 cut(s) 227, 975, 1100, 1215
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 8 cut(s) 84, 119, 249, 729, 847, 854, 1149, 1162
FspBI CTAG 2 cut(s) 428, 587
GluI GCNGC 8 cut(s) 84, 119, 249, 729, 847, 854, 1149, 1162
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 4 cut(s) 86, 114, 173, 846
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 1258
Hin1I GRCGYC 1 cut(s) 1194
Hin1II CATG 4 cut(s) 435, 521, 1304, 1343
HincII GTYRAC 2 cut(s) 950, 1132
HindII GTYRAC 2 cut(s) 950, 1132
HinfI GANTC 3 cut(s) 177, 632, 1004
HpaII CCGG 1 cut(s) 398
HphI GGTGA 4 cut(s) 327, 594, 967, 1013
Hpy166II GTNNAC 7 cut(s) 150, 498, 641, 950, 1097, 1132, 1371
Hpy188I TCNGA 3 cut(s) 213, 778, 1350
Hpy188III TCNNGA 3 cut(s) 6, 740, 797
Hpy8I GTNNAC 7 cut(s) 150, 498, 641, 950, 1097, 1132, 1371
HpyAV CCTTC 3 cut(s) 451, 548, 1183
HpyCH4III ACNGT 2 cut(s) 100, 1104
HpyCH4IV ACGT 4 cut(s) 17, 1194, 1250, 1367
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 626, 701, 1145
HpyF3I CTNAG 2 cut(s) 572, 645
HpySE526I ACGT 4 cut(s) 17, 1194, 1250, 1367
Hsp92I GRCGYC 1 cut(s) 1194
Hsp92II CATG 4 cut(s) 435, 521, 1304, 1343
Kzo9I GATC 3 cut(s) 591, 742, 1288
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 3 cut(s) 625, 799, 1362
Lsp1109I GCAGC 3 cut(s) 740, 840, 1135
LweI GCATC 3 cut(s) 902, 1237, 1344
MaeI CTAG 2 cut(s) 428, 587
MaeII ACGT 4 cut(s) 17, 1194, 1250, 1367
MaeIII GTNAC 1 cut(s) 1363
MalI GATC 3 cut(s) 593, 744, 1290
MboI GATC 3 cut(s) 591, 742, 1288
MboII GAAGA 8 cut(s) 67, 668, 739, 832, 835, 890, 1283, 1363
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 2 cut(s) 439, 533
MnlI CCTC 5 cut(s) 15, 158, 163, 435, 654
MseI TTAA 3 cut(s) 978, 1070, 1311
MslI CAYNNNNRTG 2 cut(s) 614, 993
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 5 cut(s) 226, 399, 945, 993, 1361
Mva1269I GAATGC 2 cut(s) 359, 1271
MvaI CCWGG 4 cut(s) 226, 945, 993, 1361
MwoI GCNNNNNNNGC 4 cut(s) 257, 626, 701, 1145
NciI CCSGG 1 cut(s) 399
NdeII GATC 3 cut(s) 591, 742, 1288
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 4 cut(s) 435, 521, 1304, 1343
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 2 cut(s) 521, 1343
PaeR7I CTCGAG 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 50
PctI GAATGC 2 cut(s) 359, 1271
PfeI GAWTC 3 cut(s) 177, 632, 1004
PfoI TCCNGGA 1 cut(s) 224
PkrI GCNGC 8 cut(s) 85, 120, 250, 730, 848, 855, 1150, 1163
PpuMI RGGWCCY 1 cut(s) 698
PsiI TTATAA 1 cut(s) 1173
Psp124BI GAGCTC 1 cut(s) 533
Psp1406I AACGTT 1 cut(s) 1367
Psp5II RGGWCCY 1 cut(s) 698
Psp6I CCWGG 4 cut(s) 224, 943, 991, 1359
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 4 cut(s) 224, 943, 991, 1359
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 4 cut(s) 172, 460, 641, 698
PspPPI RGGWCCY 1 cut(s) 698
PspXI VCTCGAGB 1 cut(s) 354
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 591
RsaI GTAC 5 cut(s) 137, 188, 497, 682, 1098
RsaNI GTAC 5 cut(s) 136, 187, 496, 681, 1097
RseI CAYNNNNRTG 2 cut(s) 614, 993
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 978, 1070, 1311
SatI GCNGC 8 cut(s) 84, 119, 249, 729, 847, 854, 1149, 1162
Sau3AI GATC 3 cut(s) 591, 742, 1288
Sau96I GGNCC 4 cut(s) 172, 460, 641, 698
ScrFI CCNGG 5 cut(s) 226, 399, 945, 993, 1361
SduI GDGCHC 2 cut(s) 439, 533
SfaNI GCATC 3 cut(s) 902, 1237, 1344
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 3 cut(s) 460, 641, 698
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 614, 993
SmlI CTYRAG 4 cut(s) 354, 415, 909, 1125
SmoI CTYRAG 4 cut(s) 354, 415, 909, 1125
SsiI CCGC 6 cut(s) 83, 118, 248, 476, 847, 1162
SspMI CTAG 2 cut(s) 428, 587
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 5 cut(s) 224, 397, 943, 991, 1359
TaaI ACNGT 2 cut(s) 100, 1104
TaiI ACGT 4 cut(s) 20, 1197, 1253, 1370
TaqI TCGA 2 cut(s) 355, 937
TatI WGTACW 3 cut(s) 186, 495, 1096
TauI GCSGC 5 cut(s) 86, 121, 251, 849, 1164
TfiI GAWTC 3 cut(s) 177, 632, 1004
Tru1I TTAA 3 cut(s) 978, 1070, 1311
Tru9I TTAA 3 cut(s) 978, 1070, 1311
TscAI CASTG 1 cut(s) 82
TseI GCWGC 3 cut(s) 728, 853, 1148
TspDTI ATGAA 6 cut(s) 697, 773, 905, 1048, 1104, 1317
TspGWI ACGGA 1 cut(s) 1321
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 3 cut(s) 460, 641, 698
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 4 cut(s) 43, 229, 861, 932
XceI RCATGY 2 cut(s) 521, 1343
XhoI CTCGAG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 428, 587
ZraI GACGTC 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.