Rh5AG247900

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000876
Physical Location & Seq
Forward (+)
30847245 .. 30852218
4974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG247900.1

Sequence Viewer

Length: 1521 bp
ATGCTCTGCCGGTTATTTTTGAGAAATAATAAACATTCTATAAGAGGACAATCCCCATTTCTGCTACATAGAGCAAAAGATAAGTTTTTGAATAGTAGTGGTTATAGGAACTTATATACCATATCAGCAAGGAGTGCAGCTTCTCAACATGCCCAGTTTGCTTGGAGAAAGCTTTCTCACTTGTATTTCTATCGGCAAACAACCTTCCCCCCAATAGGTCAAATTGCCCGTGCTGTGAGCTTGGCTTTGACACGCTCAAATTTAGTAGCTCCTGGTGTTTTTTCCTTTGTCGTTGGAGAGTTTGTTCGGGCGCAGCGTACATGTGCAGAAGCAGAAGGCCTCCCAACAAAGGACACTTTATATATTCATGCCCAAGATGGACATATTTATTTGGCCTTATTTTTTGTTTCACTTCTGGAGTGTATTATCTTGTTTGTCAGAGCAATTTATCTAGCAGTTTTATTCTCACCGTGTATAGCCATGTCACTTTTTAAGGATTCCCTCGGCCCCCAGTTTAGGAAAAAATGGCTTCATGCTGTTCATCATACACTGGAAAAAGCAGGCCCAGCGTTTATAAAATGGGGTCAATGGGCTGCTGCAAGGCCAGATCTCTTCCCAAGAGATTTGTGTGCTGAACTTGAGAAACTCCACACTAAAGCTCCAGCACATAGTTTTGACTTTACCAAAAATAGTATTGAAAAGGCATTTGGTCGCAAGCTGCCTGAAATATTTGAAAAATTTGATGAGGAACCTGTGGCATCAGGAAGTGTTGCTCAAGTTCATCAAGCTATACTCAAGTACAGATACCCGGGTCAGAAGATCAAGCCCATTTTAGTTGCTGTTAAGGTTAGACATCCAGGTGTTGGTGAAGCAATTAGGAGGGATTTTGTGATAATCAATTCTGTAGCCAAAATTTCAAGGTTCATCCCTTCTTTGAAATTGTGGAGATTGGATGAAAGCCTAAAGCAATTTGCCGTTTACATGATGTCACAAGTTGATCTGTCAAGGGAAGCTGCACATTTGAGTCGTTTTAGCTATAATTTTCGAAGATCGAAAGATGTCTCATTTCCAAGGCCTCTATACCCCTTGGTGCACCCATCTGTTTTAGTCGAAACGTACGAGCAGGGTGAAAGTGTTCAGCACTACGTCGATGAACTTGAGGGCAATGAACCGATAAAAAATGCCCTTGCTCAGATTGGAACCAATGCACTACTGAAGATGCTTCTGGTAGATAATTTTATTCATGCTGACATGCATCCTGGAAATATTCTTGTCCGAGTAACCCGTAGTAAGGTTCCAAGTAAAGAACTCTTTAGATTGAGGCCTCATGTTGTTTTCCTTGATGTGGGCTTGACTGCCGAACTTTCTAAGAGGGATCGACTGAATTTAGTGGAGTTGTTTAAGGCTGTGGCCCTTCGTGACGGTCAAAGTGTTGCGGAGTGCACACTTAGATTATCTGGACAGCAAAACTGCCCAAATCCAAGTGCTTTTATTGAGGTAAATTGTTTGTTCTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

506

Amino Acids

57.46

Weight (kDa)

9.68

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 215 - 480 3.7e-47 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 863
AciI CCGC 1 cut(s) 1436
AclWI GGATC 1 cut(s) 1383
AcsI RAATTY 4 cut(s) 259, 737, 912, 1384
AcuI CTGAAG 1 cut(s) 1235
AfaI GTAC 3 cut(s) 319, 800, 1118
AfiI CCNNNNNNNGG 6 cut(s) 215, 349, 516, 863, 1291, 1345
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 5 cut(s) 91, 698, 734, 918, 937
AjnI CCWGG 3 cut(s) 271, 856, 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 9 cut(s) 140, 172, 240, 269, 659, 718, 788, 1013, 1035
AluI AGCT 9 cut(s) 140, 172, 240, 269, 659, 718, 788, 1013, 1035
Alw21I GWGCWC 2 cut(s) 1095, 1445
Alw26I GTCTC 1 cut(s) 1066
Alw44I GTGCAC 2 cut(s) 1091, 1441
AlwI GGATC 1 cut(s) 1383
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 8 cut(s) 337, 393, 505, 562, 602, 1073, 1322, 1410
ApaLI GTGCAC 2 cut(s) 1091, 1441
ApeKI GCWGC 6 cut(s) 137, 313, 593, 596, 718, 1013
ApoI RAATTY 4 cut(s) 259, 737, 912, 1384
Asp700I GAANNNNTTC 2 cut(s) 172, 1134
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 3 cut(s) 506, 563, 1411
AsuC2I CCSGG 2 cut(s) 809, 810
AsuHPI GGTGA 3 cut(s) 459, 878, 1139
AsuII TTCGAA 1 cut(s) 1045
AvaI CYCGRG 1 cut(s) 808
BaeGI GKGCMC 2 cut(s) 1095, 1445
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
Bbv12I GWGCWC 2 cut(s) 1095, 1445
BbvI GCAGC 6 cut(s) 149, 325, 580, 583, 705, 1000
BccI CCATC 2 cut(s) 371, 1105
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 3 cut(s) 273, 858, 1260
BcnI CCSGG 2 cut(s) 809, 810
BcoDI GTCTC 1 cut(s) 1066
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 903
BglII AGATCT 1 cut(s) 607
BisI GCNGC 6 cut(s) 138, 314, 594, 597, 719, 1014
BlsI GCNGC 6 cut(s) 139, 315, 595, 598, 720, 1015
Bme1390I CCNGG 5 cut(s) 273, 809, 810, 858, 1260
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 3 cut(s) 506, 563, 1411
BmiI GGNNCC 4 cut(s) 508, 750, 1201, 1296
BmrFI CCNGG 5 cut(s) 273, 809, 810, 858, 1260
BmrI ACTGGG 2 cut(s) 148, 505
BmsI GCATC 3 cut(s) 767, 1209, 1264
BmuI ACTGGG 2 cut(s) 148, 505
BpmI CTGGAG 2 cut(s) 437, 645
Bpu14I TTCGAA 1 cut(s) 1045
BpuEI CTTGAG 4 cut(s) 659, 759, 779, 1178
BpuMI CCSGG 2 cut(s) 809, 810
BsaJI CCNNGG 4 cut(s) 502, 808, 1070, 1086
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 643, 673
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 349, 516, 863, 1291, 1345
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 3 cut(s) 154, 511, 555
Bse3DI GCAATG 1 cut(s) 1171
BseBI CCWGG 3 cut(s) 273, 858, 1260
BseDI CCNNGG 4 cut(s) 502, 808, 1070, 1086
BseGI GGATG 4 cut(s) 853, 924, 958, 1255
BseLI CCNNNNNNNGG 6 cut(s) 215, 349, 516, 863, 1291, 1345
BseMI GCAATG 1 cut(s) 1171
BseMII CTCAG 1 cut(s) 1205
BseNI ACTGG 3 cut(s) 154, 511, 555
BseSI GKGCMC 2 cut(s) 1095, 1445
BseXI GCAGC 6 cut(s) 149, 325, 580, 583, 705, 1000
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 3 cut(s) 156, 345, 999
BshFI GGCC 8 cut(s) 339, 395, 507, 564, 604, 1075, 1324, 1412
BsiHKAI GWGCWC 2 cut(s) 1095, 1445
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 10, 809
BsiWI CGTACG 1 cut(s) 1116
BslI CCNNNNNNNGG 6 cut(s) 215, 349, 516, 863, 1291, 1345
BsmAI GTCTC 1 cut(s) 1066
BsnI GGCC 8 cut(s) 339, 395, 507, 564, 604, 1075, 1324, 1412
BsoBI CYCGRG 1 cut(s) 808
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1286I GDGCHC 2 cut(s) 1095, 1445
Bsp143I GATC 5 cut(s) 607, 819, 997, 1049, 1375
BspACI CCGC 1 cut(s) 1436
BspANI GGCC 8 cut(s) 339, 395, 507, 564, 604, 1075, 1324, 1412
BspCNI CTCAG 1 cut(s) 1204
BspLI GGNNCC 4 cut(s) 508, 750, 1201, 1296
BspPI GGATC 1 cut(s) 1383
BspT104I TTCGAA 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 1171
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 3 cut(s) 154, 511, 555
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 502, 808, 1070, 1086
BssMI GATC 5 cut(s) 607, 819, 997, 1049, 1375
BssT1I CCWWGG 2 cut(s) 1070, 1086
Bst2UI CCWGG 3 cut(s) 273, 858, 1260
Bst4CI ACNGT 2 cut(s) 471, 1424
Bst6I CTCTTC 1 cut(s) 617
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 562, 716
BstDEI CTNAG 3 cut(s) 1191, 1368, 1448
BstF5I GGATG 4 cut(s) 853, 924, 958, 1255
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 610, 822, 1000, 1052, 1378
BstMAI GTCTC 1 cut(s) 1066
BstMBI GATC 5 cut(s) 607, 819, 997, 1049, 1375
BstMWI GCNNNNNNNGC 3 cut(s) 134, 158, 566
BstNI CCWGG 3 cut(s) 273, 858, 1260
BstNSI RCATGY 3 cut(s) 152, 324, 1255
BstSCI CCNGG 5 cut(s) 271, 807, 808, 856, 1258
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 1095, 1445
BstV1I GCAGC 6 cut(s) 149, 325, 580, 583, 705, 1000
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 8 cut(s) 339, 395, 507, 564, 604, 1075, 1324, 1412
BtsCI GGATG 4 cut(s) 853, 924, 958, 1255
BtsIMutI CAGTG 1 cut(s) 548
Cac8I GCNNGC 2 cut(s) 562, 716
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 506, 563, 1411
Cfr9I CCCGGG 1 cut(s) 808
Csp6I GTAC 3 cut(s) 318, 799, 1117
CviAII CATG 9 cut(s) 149, 321, 368, 481, 533, 982, 1244, 1252, 1328
CviQI GTAC 3 cut(s) 318, 799, 1117
DdeI CTNAG 3 cut(s) 1191, 1368, 1448
DpnI GATC 5 cut(s) 609, 821, 999, 1051, 1377
DpnII GATC 5 cut(s) 607, 819, 997, 1049, 1375
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Eco130I CCWWGG 2 cut(s) 1070, 1086
Eco147I AGGCCT 3 cut(s) 339, 1075, 1324
Eco57I CTGAAG 1 cut(s) 1235
Eco88I CYCGRG 1 cut(s) 808
EcoRII CCWGG 3 cut(s) 271, 856, 1258
EcoT14I CCWWGG 2 cut(s) 1070, 1086
EcoT22I ATGCAT 1 cut(s) 1257
ErhI CCWWGG 2 cut(s) 1070, 1086
FaeI CATG 9 cut(s) 152, 324, 371, 484, 536, 985, 1247, 1255, 1331
FatI CATG 9 cut(s) 148, 320, 367, 480, 532, 981, 1243, 1251, 1327
Fnu4HI GCNGC 6 cut(s) 138, 314, 594, 597, 719, 1014
FokI GGATG 4 cut(s) 840, 911, 965, 1242
Fsp4HI GCNGC 6 cut(s) 138, 314, 594, 597, 719, 1014
FspBI CTAG 1 cut(s) 452
GlaI GCGC 1 cut(s) 312
GluI GCNGC 6 cut(s) 138, 314, 594, 597, 719, 1014
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 2 cut(s) 437, 645
HaeIII GGCC 8 cut(s) 339, 395, 507, 564, 604, 1075, 1324, 1412
HapII CCGG 2 cut(s) 10, 809
HhaI GCGC 1 cut(s) 313
Hin1II CATG 9 cut(s) 152, 324, 371, 484, 536, 985, 1247, 1255, 1331
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 497, 1024
HpaII CCGG 2 cut(s) 10, 809
HphI GGTGA 3 cut(s) 459, 878, 1139
Hpy166II GTNNAC 3 cut(s) 979, 1093, 1443
Hpy188I TCNGA 4 cut(s) 440, 816, 1194, 1277
Hpy188III TCNNGA 5 cut(s) 416, 762, 1418, 1458, 1513
Hpy8I GTNNAC 3 cut(s) 979, 1093, 1443
Hpy99I CGWCG 1 cut(s) 1151
HpyAV CCTTC 4 cut(s) 214, 329, 939, 1424
HpyCH4III ACNGT 2 cut(s) 471, 1424
HpyCH4IV ACGT 2 cut(s) 1115, 1146
HpyCH4V TGCA 8 cut(s) 137, 326, 599, 1016, 1093, 1208, 1255, 1443
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 158, 566
HpyF3I CTNAG 3 cut(s) 1191, 1368, 1448
HpySE526I ACGT 2 cut(s) 1115, 1146
Hsp92II CATG 9 cut(s) 152, 324, 371, 484, 536, 985, 1247, 1255, 1331
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 5 cut(s) 607, 819, 997, 1049, 1375
LmnI GCTCC 2 cut(s) 274, 664
Lsp1109I GCAGC 6 cut(s) 149, 325, 580, 583, 705, 1000
LweI GCATC 3 cut(s) 767, 1209, 1264
MaeI CTAG 1 cut(s) 452
MaeII ACGT 2 cut(s) 1115, 1146
MaeIII GTNAC 4 cut(s) 483, 987, 1279, 1418
MalI GATC 5 cut(s) 609, 821, 999, 1051, 1377
MboI GATC 5 cut(s) 607, 819, 997, 1049, 1375
MboII GAAGA 4 cut(s) 604, 829, 1059, 1228
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 2 cut(s) 1095, 1445
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 1257
MroXI GAANNNNTTC 2 cut(s) 172, 1134
MseI TTAA 3 cut(s) 492, 843, 1401
MslI CAYNNNNRTG 1 cut(s) 858
MspI CCGG 2 cut(s) 10, 809
MspR9I CCNGG 5 cut(s) 273, 809, 810, 858, 1260
MvaI CCWGG 3 cut(s) 273, 858, 1260
MwoI GCNNNNNNNGC 3 cut(s) 134, 158, 566
NciI CCSGG 2 cut(s) 809, 810
NdeII GATC 5 cut(s) 607, 819, 997, 1049, 1375
NlaIII CATG 9 cut(s) 152, 324, 371, 484, 536, 985, 1247, 1255, 1331
NlaIV GGNNCC 4 cut(s) 508, 750, 1201, 1296
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 483, 987, 1418
NsiI ATGCAT 1 cut(s) 1257
NspI RCATGY 3 cut(s) 152, 324, 1255
NspV TTCGAA 1 cut(s) 1045
PceI AGGCCT 3 cut(s) 339, 1075, 1324
PciI ACATGT 1 cut(s) 320
PcsI WCGNNNNNNNCGW 2 cut(s) 313, 1116
PdmI GAANNNNTTC 2 cut(s) 172, 1134
PfeI GAWTC 1 cut(s) 497
Pfl23II CGTACG 1 cut(s) 1116
PflMI CCANNNNNTGG 1 cut(s) 863
PfoI TCCNGGA 1 cut(s) 1258
PkrI GCNGC 6 cut(s) 139, 315, 595, 598, 720, 1015
PleI GAGTC 1 cut(s) 1032
PpsI GAGTC 1 cut(s) 1032
PscI ACATGT 1 cut(s) 320
PsiI TTATAA 1 cut(s) 575
Psp6I CCWGG 3 cut(s) 271, 856, 1258
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 3 cut(s) 271, 856, 1258
PspLI CGTACG 1 cut(s) 1116
PspN4I GGNNCC 4 cut(s) 508, 750, 1201, 1296
PspPI GGNCC 3 cut(s) 506, 563, 1411
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 3 cut(s) 319, 800, 1118
RsaNI GTAC 3 cut(s) 318, 799, 1117
RseI CAYNNNNRTG 1 cut(s) 858
SaqAI TTAA 3 cut(s) 492, 843, 1401
SatI GCNGC 6 cut(s) 138, 314, 594, 597, 719, 1014
Sau3AI GATC 5 cut(s) 607, 819, 997, 1049, 1375
Sau96I GGNCC 3 cut(s) 506, 563, 1411
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 5 cut(s) 273, 809, 810, 858, 1260
SduI GDGCHC 2 cut(s) 1095, 1445
SfaNI GCATC 3 cut(s) 767, 1209, 1264
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 1045
SmaI CCCGGG 1 cut(s) 810
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 4 cut(s) 638, 774, 794, 1157
SmoI CTYRAG 4 cut(s) 638, 774, 794, 1157
SseBI AGGCCT 3 cut(s) 339, 1075, 1324
SsiI CCGC 1 cut(s) 1436
SspI AATATT 2 cut(s) 729, 1267
SspMI CTAG 1 cut(s) 452
StuI AGGCCT 3 cut(s) 339, 1075, 1324
StyD4I CCNGG 5 cut(s) 271, 807, 808, 856, 1258
StyI CCWWGG 2 cut(s) 1070, 1086
TaaI ACNGT 2 cut(s) 471, 1424
TaiI ACGT 2 cut(s) 1118, 1149
TaqI TCGA 5 cut(s) 1045, 1052, 1110, 1149, 1378
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 3 cut(s) 492, 843, 1401
Tru9I TTAA 3 cut(s) 492, 843, 1401
TscAI CASTG 1 cut(s) 555
TseFI GTSAC 3 cut(s) 483, 987, 1418
TseI GCWGC 6 cut(s) 137, 313, 593, 596, 718, 1013
Tsp45I GTSAC 3 cut(s) 483, 987, 1418
TspDTI ATGAA 9 cut(s) 356, 521, 530, 770, 913, 969, 1167, 1182, 1232
TspMI CCCGGG 1 cut(s) 808
TspRI CASTG 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 863
VneI GTGCAC 2 cut(s) 1091, 1441
XapI RAATTY 4 cut(s) 259, 737, 912, 1384
XceI RCATGY 3 cut(s) 152, 324, 1255
XmaI CCCGGG 1 cut(s) 808
XmnI GAANNNNTTC 2 cut(s) 172, 1134
XspI CTAG 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.