Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004365

Physical Location & Seq

Genomic Coordinates Forward (+)

32473628 .. 32475580

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGATATAGATACTGGTATGTTTACGGTTCCTCAAACTGTTGGCAGCGTACTGTGTTGCAAATGTGGTATTCACATGGCACCAAATGCTGCCAATATGTGCGTCAAGTTTGTAAATGAGGGTATCTCATACCCACCAGTACACACTAGCTTGTCTCCTGAAGTTGACATTACTGAAGGTTTGCAGGAGCATGTGACTATTGTGCATTGCCCCGAATGTGATACCTACTTTCAGCCTCTGAGAACTTGGATTAAAGCCCAACTAGAATCGAAAGAGTTGCTAACTTTCTGTGTGAAGAGACTGAAGAACTTGAATAAAATTACGTTGGTTCATGCTGAATCACTGATTCTGAAGCATGGTGCTGTTGCCAGTGCCATAAAGATTACACAGATGGACCAATGTATCGATTTCTTTTTCTCAACCCGGAGTCATGGTGTAAAATTTGTGGGTAAAGTTGCTCCAGTAAGGAGTTTTGAAATCTCCCCCATTTGCCGTGAGGATTTGATCTTTTTGCCACCCAAGGTTAGATCTAGTTTTGGGAATCTTGGTCCTCTAATGATTTGCACTAAAGTGACAAACAACATTGCTTTGCTTCATCCTTTGACCTTGAGGCATTGTTTCTTGGATGCTGATCAATATTGGAGGTTAACCTTTAAGTCTCTACAAACGAGCCGGGAGTTAGTGGAGTATATAGTGCTCGATGTAGAGATGGTTTCATTCGAAGTTATTGTTGGTGGCACAAGGTATGCTTTAGCTGATGCACAAGTTGCCCGTGTGTCTGATTTTGGGAAGAATGACACTATTTTCAACATAAAAATACATATAGGCCATCTTTTAAACCTTGGGGATTATGCTCTTGGTTATGACTTATATGGGGCAAACAGTAATGATGAGGAACTAGACAAGTATAAGGGTCTAGTCATTCCAGATGTAATTTTGATAAAGAAGAGCTATGAAGAAAAGCACCTGAAGAAGCGTGCAAAGCCTTGTGCATGGATGCTTAAATCCCTAGCCATGGAAGTGGATGCTAAAGGTAGAGGCGCGCTAGAAAAGGAGGCCTTAGAGTATGAACAGTTCTTGAAAGATCTGGAAGAGAATCCTGACTTCAGGTTCAATATTGATTTGTACTGTGATGAAGAATACCAGCCATCAGAGATAGCATCTATGACCGATGGGGAAGATGCACCTTCTGTGCCCTTTGATGAGTTGCTTGCCGACATGGATAACCTCAAATTAAGAGAGTATGAAGATGATGAGGACAGTGGCAGCATGAGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

NMD3

Protein Analysis

426

Amino Acids

48.16

Weight (kDa)

5.08

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NMD3	PF04981	19 - 112	4.9e-10	NMD3 family
NMD_SH3	PF21193	163 - 207	3.5e-14	NMD3 SH3 domain
OB_NMD3	PF21192	227 - 316	2e-28	NMD3 OB-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03820
fragaria_vesca	FvH4_1g26190 FvH4_1g26190 FvH4_4g00390 FvH4_4g00390
prunus_persica	Prupe.4G217800_v2.0.a1 Prupe.4G217800_v2.0.a1 Prupe.4G273200_v2.0.a1
pyrus_communis	pycom04g00430
rosa_chinensis	RchiOBHm_Chr3g0485681 RchiOBHm_Chr3g0485701 RchiOBHm_Chr4g0385341
rosa_laevigata	RLG00000010236 RLG00000023132
rosa_multiflora	Rmu_sc0001259.1_g000008 Rmu_sc0003005.1_g000028
rosa_roxburghii	Rroxscaffold_5G00333270 Rroxscaffold_6G00396510 Rroxscaffold_6G00396820 Rroxscaffold_6G00396840
rosa_rugosa	Rorug03G0220700 Rorug03G0300500
rosa_samantha	Rh3AG269900 Rh3BG305700 Rh3CG303800 Rh3DG300100 Rh4AG004200 Rh4BG003600 Rh4CG005300 Rh4DG003800
rosa_wichuraiana	Rw3G024040 Rw4G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	1043
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	6 cut(s)	180, 195, 323, 371, 989, 1090
AfaI	GTAC	3 cut(s)	51, 141, 1127
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AgsI	TTSAA	5 cut(s)	313, 476, 808, 1081, 1114
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	150, 755, 951
AluI	AGCT	3 cut(s)	150, 755, 951
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	3 cut(s)	159, 292, 663
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	826, 1056
ApeKI	GCWGC	3 cut(s)	45, 89, 1266
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	1043, 1045
AspS9I	GGNCC	2 cut(s)	394, 548
AsuC2I	CCSGG	2 cut(s)	424, 674
AsuII	TTCGAA	1 cut(s)	720
AvaII	GGWCC	2 cut(s)	394, 548
BaeGI	GKGCMC	1 cut(s)	1197
BaeI	ACNNNNGTAYC	2 cut(s)	385, 418
BanI	GGYRCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	57, 76
BccI	CCATC	5 cut(s)	385, 703, 837, 1156, 1166
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	424, 674
BcoDI	GTCTC	3 cut(s)	159, 292, 663
BfaI	CTAG	7 cut(s)	147, 263, 531, 899, 917, 1010, 1046
BglII	AGATCT	2 cut(s)	527, 1084
BisI	GCNGC	3 cut(s)	46, 90, 1267
BlsI	GCNGC	3 cut(s)	47, 91, 1268
Bme1390I	CCNGG	2 cut(s)	424, 674
Bme18I	GGWCC	2 cut(s)	394, 548
BmgT120I	GGNCC	2 cut(s)	394, 548
BmiI	GGNNCC	2 cut(s)	30, 81
BmrFI	CCNGG	2 cut(s)	424, 674
BmsI	GCATC	6 cut(s)	616, 748, 987, 1015, 1169, 1171
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	424, 674
Bsa29I	ATCGAT	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	519, 841, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse1I	ACTGG	4 cut(s)	19, 137, 369, 461
Bse3DI	GCAATG	2 cut(s)	205, 582
Bse8I	GATNNNNATC	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	519, 841, 1014
BseGI	GGATG	4 cut(s)	595, 631, 1002, 1030
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseMI	GCAATG	2 cut(s)	205, 582
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	4 cut(s)	19, 137, 369, 461
BsePI	GCGCGC	1 cut(s)	1041
BseSI	GKGCMC	1 cut(s)	1197
BseXI	GCAGC	2 cut(s)	57, 76
Bsh1236I	CGCG	1 cut(s)	1043
BshFI	GGCC	2 cut(s)	828, 1058
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	424, 673
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	3 cut(s)	159, 292, 663
BsnI	GGCC	2 cut(s)	828, 1058
Bsp119I	TTCGAA	1 cut(s)	720
Bsp1286I	GDGCHC	2 cut(s)	699, 1197
Bsp143I	GATC	4 cut(s)	504, 527, 631, 1084
Bsp19I	CCATGG	1 cut(s)	1014
BspANI	GGCC	2 cut(s)	828, 1058
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	1043
BspLI	GGNNCC	2 cut(s)	30, 81
BspQI	GCTCTTC	1 cut(s)	941
BspT104I	TTCGAA	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	205, 582
BsrI	ACTGG	4 cut(s)	19, 137, 369, 461
BssECI	CCNNGG	3 cut(s)	519, 841, 1014
BssHII	GCGCGC	1 cut(s)	1041
BssMI	GATC	4 cut(s)	504, 527, 631, 1084
BssT1I	CCWWGG	3 cut(s)	519, 841, 1014
Bst4CI	ACNGT	7 cut(s)	28, 40, 54, 884, 1074, 1130, 1262
Bst6I	CTCTTC	3 cut(s)	290, 941, 1086
BstAPI	GCANNNNNTGC	2 cut(s)	86, 767
BstBI	TTCGAA	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	978, 1043, 1212
BstDEI	CTNAG	2 cut(s)	239, 1060
BstDSI	CCRYGG	1 cut(s)	1014
BstF5I	GGATG	4 cut(s)	595, 631, 1002, 1030
BstFNI	CGCG	1 cut(s)	1043
BstHHI	GCGC	2 cut(s)	1043, 1045
BstKTI	GATC	4 cut(s)	507, 530, 634, 1087
BstMAI	GTCTC	3 cut(s)	159, 292, 663
BstMBI	GATC	4 cut(s)	504, 527, 631, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 767, 982
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	422, 672
BstSLI	GKGCMC	1 cut(s)	1197
BstUI	CGCG	1 cut(s)	1043
BstV1I	GCAGC	2 cut(s)	57, 76
BstX2I	RGATCY	2 cut(s)	527, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	1021
BstYI	RGATCY	2 cut(s)	527, 1084
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	828, 1058
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	1014
BtsCI	GGATG	4 cut(s)	595, 631, 1002, 1030
BtsIMutI	CAGTG	3 cut(s)	341, 376, 1267
Cac8I	GCNNGC	3 cut(s)	978, 1043, 1212
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	1043, 1045
Cfr13I	GGNCC	2 cut(s)	394, 548
ClaI	ATCGAT	1 cut(s)	405
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	50, 140, 1126
CviAII	CATG	9 cut(s)	76, 191, 332, 356, 431, 993, 1015, 1219, 1270
CviQI	GTAC	3 cut(s)	50, 140, 1126
DdeI	CTNAG	2 cut(s)	239, 1060
DpnI	GATC	4 cut(s)	506, 529, 633, 1086
DpnII	GATC	4 cut(s)	504, 527, 631, 1084
DraI	TTTAAA	1 cut(s)	837
Eam1104I	CTCTTC	3 cut(s)	290, 941, 1086
EarI	CTCTTC	3 cut(s)	290, 941, 1086
Eco130I	CCWWGG	3 cut(s)	519, 841, 1014
Eco147I	AGGCCT	1 cut(s)	1058
Eco47I	GGWCC	2 cut(s)	394, 548
Eco57I	CTGAAG	6 cut(s)	180, 195, 323, 371, 989, 1090
EcoT14I	CCWWGG	3 cut(s)	519, 841, 1014
ErhI	CCWWGG	3 cut(s)	519, 841, 1014
FaeI	CATG	9 cut(s)	79, 194, 335, 359, 434, 996, 1018, 1222, 1273
FalI	AAGNNNNNCTT	4 cut(s)	733, 765, 1043, 1075
FatI	CATG	9 cut(s)	75, 190, 331, 355, 430, 992, 1014, 1218, 1269
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	46, 90, 1267
FokI	GGATG	4 cut(s)	582, 638, 1009, 1037
Fsp4HI	GCNGC	3 cut(s)	46, 90, 1267
FspBI	CTAG	7 cut(s)	147, 263, 531, 899, 917, 1010, 1046
GlaI	GCGC	2 cut(s)	1042, 1044
GluI	GCNGC	3 cut(s)	46, 90, 1267
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	828, 1058
HapII	CCGG	2 cut(s)	424, 673
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	1043, 1045
Hin1II	CATG	9 cut(s)	79, 194, 335, 359, 434, 996, 1018, 1222, 1273
Hin6I	GCGC	2 cut(s)	1041, 1043
HinP1I	GCGC	2 cut(s)	1041, 1043
HincII	GTYRAC	2 cut(s)	166, 648
HindII	GTYRAC	2 cut(s)	166, 648
HinfI	GANTC	6 cut(s)	266, 338, 346, 427, 541, 1096
HpaI	GTTAAC	1 cut(s)	648
HpaII	CCGG	2 cut(s)	424, 673
Hpy166II	GTNNAC	4 cut(s)	24, 142, 166, 648
Hpy188I	TCNGA	4 cut(s)	240, 351, 781, 1153
Hpy188III	TCNNGA	5 cut(s)	158, 926, 1078, 1088, 1100
Hpy8I	GTNNAC	4 cut(s)	24, 142, 166, 648
HpyAV	CCTTC	2 cut(s)	170, 1197
HpyCH4III	ACNGT	7 cut(s)	28, 40, 54, 884, 1074, 1130, 1262
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	8 cut(s)	60, 184, 205, 564, 761, 980, 992, 1184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 767, 982
HpyF3I	CTNAG	2 cut(s)	239, 1060
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	9 cut(s)	79, 194, 335, 359, 434, 996, 1018, 1222, 1273
HspAI	GCGC	2 cut(s)	1041, 1043
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	504, 527, 631, 1084
LguI	GCTCTTC	1 cut(s)	941
LmnI	GCTCC	2 cut(s)	187, 463
Lsp1109I	GCAGC	2 cut(s)	57, 76
LweI	GCATC	6 cut(s)	616, 748, 987, 1015, 1169, 1171
MaeI	CTAG	7 cut(s)	147, 263, 531, 899, 917, 1010, 1046
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	193, 571
MalI	GATC	4 cut(s)	506, 529, 633, 1086
MboI	GATC	4 cut(s)	504, 527, 631, 1084
MflI	RGATCY	2 cut(s)	527, 1084
MhlI	GDGCHC	2 cut(s)	699, 1197
MluCI	AATT	4 cut(s)	318, 440, 933, 1232
MlyI	GAGTC	1 cut(s)	436
MseI	TTAA	6 cut(s)	252, 647, 654, 836, 1002, 1235
MslI	CAYNNNNRTG	2 cut(s)	569, 1019
MspI	CCGG	2 cut(s)	424, 673
MspR9I	CCNGG	2 cut(s)	424, 674
MvnI	CGCG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	3 cut(s)	86, 767, 982
NciI	CCSGG	2 cut(s)	424, 674
NcoI	CCATGG	1 cut(s)	1014
NdeII	GATC	4 cut(s)	504, 527, 631, 1084
NlaIII	CATG	9 cut(s)	79, 194, 335, 359, 434, 996, 1018, 1222, 1273
NlaIV	GGNNCC	2 cut(s)	30, 81
NmuCI	GTSAC	2 cut(s)	193, 571
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	720
OliI	CACNNNNGTG	1 cut(s)	569
PauI	GCGCGC	1 cut(s)	1041
PceI	AGGCCT	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	941
PfeI	GAWTC	5 cut(s)	266, 338, 346, 541, 1096
PkrI	GCNGC	3 cut(s)	47, 91, 1268
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	30, 81
PspPI	GGNCC	2 cut(s)	394, 548
PsrI	GAACNNNNNNTAC	2 cut(s)	1058, 1090
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	527, 1084
PteI	GCGCGC	1 cut(s)	1041
RsaI	GTAC	3 cut(s)	51, 141, 1127
RsaNI	GTAC	3 cut(s)	50, 140, 1126
RseI	CAYNNNNRTG	2 cut(s)	569, 1019
SapI	GCTCTTC	1 cut(s)	941
SaqAI	TTAA	6 cut(s)	252, 647, 654, 836, 1002, 1235
SatI	GCNGC	3 cut(s)	46, 90, 1267
Sau3AI	GATC	4 cut(s)	504, 527, 631, 1084
Sau96I	GGNCC	2 cut(s)	394, 548
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	424, 674
SduI	GDGCHC	2 cut(s)	699, 1197
SfaNI	GCATC	6 cut(s)	616, 748, 987, 1015, 1169, 1171
SfuI	TTCGAA	1 cut(s)	720
SinI	GGWCC	2 cut(s)	394, 548
SmiMI	CAYNNNNRTG	2 cut(s)	569, 1019
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	4 cut(s)	318, 440, 933, 1232
SseBI	AGGCCT	1 cut(s)	1058
SspI	AATATT	2 cut(s)	638, 1117
SspMI	CTAG	7 cut(s)	147, 263, 531, 899, 917, 1010, 1046
StuI	AGGCCT	1 cut(s)	1058
StyD4I	CCNGG	2 cut(s)	422, 672
StyI	CCWWGG	3 cut(s)	519, 841, 1014
TaaI	ACNGT	7 cut(s)	28, 40, 54, 884, 1074, 1130, 1262
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	269, 405, 699, 720
TaqII	GACCGA	1 cut(s)	1184
TasI	AATT	4 cut(s)	318, 440, 933, 1232
TatI	WGTACW	2 cut(s)	139, 1125
TfiI	GAWTC	5 cut(s)	266, 338, 346, 541, 1096
Tru1I	TTAA	6 cut(s)	252, 647, 654, 836, 1002, 1235
Tru9I	TTAA	6 cut(s)	252, 647, 654, 836, 1002, 1235
TscAI	CASTG	3 cut(s)	348, 376, 1267
TseFI	GTSAC	2 cut(s)	193, 571
TseI	GCWGC	3 cut(s)	45, 89, 1266
Tsp45I	GTSAC	2 cut(s)	193, 571
TspDTI	ATGAA	7 cut(s)	320, 584, 705, 969, 1083, 1149, 1260
TspRI	CASTG	3 cut(s)	348, 376, 1267
VpaK11BI	GGWCC	2 cut(s)	394, 548
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	7 cut(s)	147, 263, 531, 899, 917, 1010, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.