pycom04g00430

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
415689 .. 417221
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00430.1

Sequence Viewer

Length: 1533 bp
ATGTTTATGGTTCATCAGACTGTTGGCAGCGTACTATGTTGCAAATGCGGTATCCCCATGGCACCAAACGCTGCCAATATGTGTGTCAAGTGTCTGCGCTCTGAAGTTGATATTACAGAAGGTCTGCAGAAGCATGTCACCATTGTTCATTGCCCCGAGTGTGAGTGCTACTTGCAGCCTCCAAGAACTTGGATCAAAGCCCAATTGGAGTCGAAGGAGCTGCTGACCTTCTGCGTTAAGAGACTCAAGAACTTGAATAAAGTTCGGTTGGTGCATGCCGAATTTATTTGGACTGAACCTCACTCCAAGAGGATCAAGGTTAAGTTGAAAGTTCAGAAGGAGGTTCTTAATGGAGCAATACTTGAACAATCATATATTGTTGAGTATGTTCAACAAGAGCATATGTGCGAATCCTGTTCAAGGGTTCAGGCAAACCCCGACCAGTGGGTTGCATCTGTGCAACTCCGCCAGCATGTTTCTCACAGGCGCACTTTTTTCTATCTGGAACAGCTGATCCTGAAGCACGGTGCTGCTGCTAGTGCTATAAAGATAAAGCAGATGGAACAAGGTATCGACTTCTTTTTCTCAAACCGAAGTCATGGTGTGAAATTTGTGGAATTTGTGGGCAAAGTTGCTCCAGTAAGGAGTCGCAGTGACAAACAGCTTGTTTCCCATGATTCTAAAAGTAACAATTATAATTATAAGCATACATTCTCTGTTGAAATAAGCCCCATTTGCCGTGAAGATTTGATTTGTCTGCCTCCCAAGGTCAGGTCTAGTTTGGGAAATCTCGGTCCTCTCGTGATTTGCACCAAAGTGACCAATAGTATTGCTTTGCTTGATCCGTTCACCCTGAGGCATTGTTTCTTGGATACTGATCAGTATTGGAGGTATTCCTTCAAGTCTCTGCATACAAGCAGGGAGCTGGTGGAGTATATAGTGCTTGATATGGAGATTATTGCCCCTGAAGTTAATGTTGGTGGCTCAAGATATGCTCTAGCTGATGCACAAGTTGCTCGCGTGTCTGATTTTGGGAAGAATGACACTATTTTCAACATAAAAACACATCTTGGCCATATTTTAAGCCCCGGTGATTATGCTCTTGGTTATGACATGTACGGGGCTAACAGCAATGATGATGAACTAGAGAAGTACAGGAGTCTGGTCATTCCAGATGCAATCTTAATAAAGAAGAGCTACGAAGAAAAGCGGCAGAAGAAGCGTGGGAAGCCTCGTCCCTGGAAGCTTAAATCCCTTGGTATGGAGATTGATGATAAAAATAAAACAGATCAAGAAAAGGTGGAGTCGGAATATGAACAGTTCTTGAAGGATCTGGAGGAGAACCCTGAGATGAGGTTTAACATGTCACTGTACAAGAATGAAGAATACCAACCGTCAGAGATGGCATCTATGACTGATGGGGAAGATGCACCTTCTGTCCCACTTGAAGAGTTGCTTGATGACCTCAGACTTCGTGACTCCGACAATGACGATGTTGAAGATGGGGAAGACGATAGTAGCATGCGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

58.62

Weight (kDa)

6.02

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NMD3 PF04981 13 - 242 1.3e-76 NMD3 family
NMD_SH3 PF21193 245 - 288 5.3e-18 NMD3 SH3 domain
OB_NMD3 PF21192 309 - 398 9e-30 NMD3 OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 696, 702
AccB1I GGYRCC 1 cut(s) 61
AccII CGCG 1 cut(s) 1020
AciI CCGC 4 cut(s) 48, 466, 1210, 1525
AclWI GGATC 5 cut(s) 200, 320, 508, 836, 1338
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 3 cut(s) 281, 608, 617
AcuI CTGAAG 3 cut(s) 123, 539, 987
AfaI GTAC 4 cut(s) 33, 1118, 1154, 1373
AfiI CCNNNNNNNGG 4 cut(s) 420, 444, 771, 1261
AflIII ACRYGT 2 cut(s) 1113, 1362
AjnI CCWGG 1 cut(s) 1238
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AleI CACNNNNGTG 1 cut(s) 815
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 7 cut(s) 220, 511, 664, 925, 1001, 1197, 1246
AluI AGCT 7 cut(s) 220, 511, 664, 925, 1001, 1197, 1246
Alw26I GTCTC 2 cut(s) 235, 909
AlwI GGATC 5 cut(s) 200, 320, 508, 836, 1338
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 1072
ApeKI GCWGC 6 cut(s) 27, 71, 175, 220, 530, 533
ApoI RAATTY 3 cut(s) 281, 608, 617
AspLEI GCGC 2 cut(s) 99, 489
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 1 cut(s) 1089
AsuHPI GGTGA 3 cut(s) 130, 841, 1103
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 854
BalI TGGCCA 1 cut(s) 1074
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 1515
BbvI GCAGC 6 cut(s) 39, 58, 187, 207, 517, 520
BccI CCATC 4 cut(s) 553, 1396, 1412, 1496
BceAI ACGGC 1 cut(s) 723
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 1240
BciVI GTATCC 2 cut(s) 62, 865
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 1089
BcoDI GTCTC 2 cut(s) 235, 909
BfaI CTAG 4 cut(s) 537, 777, 998, 1145
BfmI CTRYAG 1 cut(s) 125
BfuI GTATCC 2 cut(s) 62, 865
BisI GCNGC 7 cut(s) 28, 72, 176, 221, 531, 534, 1211
BlsI GCNGC 7 cut(s) 29, 73, 177, 222, 532, 535, 1212
Bme1390I CCNGG 2 cut(s) 1089, 1240
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 1089, 1240
BmsI GCATC 5 cut(s) 461, 994, 1165, 1415, 1417
BpiI GAAGAC 1 cut(s) 1515
BpmI CTGGAG 2 cut(s) 621, 1355
BpuEI CTTGAG 2 cut(s) 230, 970
BpuMI CCSGG 1 cut(s) 1089
BsaBI GATNNNNATC 1 cut(s) 876
BsaJI CCNNGG 5 cut(s) 57, 765, 1087, 1238, 1255
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 4 cut(s) 420, 444, 771, 1261
Bse1I ACTGG 2 cut(s) 442, 638
Bse21I CCTNAGG 1 cut(s) 854
Bse3DI GCAATG 2 cut(s) 148, 1138
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 1240
BseDI CCNNGG 5 cut(s) 57, 765, 1087, 1238, 1255
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 4 cut(s) 420, 444, 771, 1261
BseMI GCAATG 2 cut(s) 148, 1138
BseMII CTCAG 3 cut(s) 845, 1338, 1480
BseNI ACTGG 2 cut(s) 442, 638
BseRI GAGGAG 1 cut(s) 1352
BseXI GCAGC 6 cut(s) 39, 58, 187, 207, 517, 520
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 1 cut(s) 1074
BshNI GGYRCC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 1089
BslFI GGGAC 2 cut(s) 1221, 1424
BslI CCNNNNNNNGG 4 cut(s) 420, 444, 771, 1261
BsmAI GTCTC 2 cut(s) 235, 909
BsmFI GGGAC 2 cut(s) 1221, 1424
BsnI GGCC 1 cut(s) 1074
BsoBI CYCGRG 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 1371
Bsp143I GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 48, 466, 1210, 1525
BspANI GGCC 1 cut(s) 1074
BspCNI CTCAG 3 cut(s) 846, 1339, 1479
BspFNI CGCG 1 cut(s) 1020
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 5 cut(s) 200, 320, 508, 836, 1338
BspQI GCTCTTC 1 cut(s) 1187
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 148, 1138
BsrGI TGTACA 1 cut(s) 1371
BsrI ACTGG 2 cut(s) 442, 638
BssECI CCNNGG 5 cut(s) 57, 765, 1087, 1238, 1255
BssMI GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 3 cut(s) 57, 765, 1255
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 1240
Bst4CI ACNGT 5 cut(s) 22, 527, 1320, 1371, 1395
Bst6I CTCTTC 2 cut(s) 1187, 1443
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstAUI TGTACA 1 cut(s) 1371
BstC8I GCNNGC 4 cut(s) 276, 470, 1018, 1523
BstDEI CTNAG 3 cut(s) 854, 1347, 1466
BstDSI CCRYGG 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 1020
BstHHI GCGC 2 cut(s) 99, 489
BstKTI GATC 7 cut(s) 195, 315, 516, 844, 880, 1291, 1333
BstMAI GTCTC 2 cut(s) 235, 909
BstMBI GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
BstMWI GCNNNNNNNGC 6 cut(s) 68, 539, 735, 1013, 1219, 1228
BstNI CCWGG 1 cut(s) 1240
BstNSI RCATGY 6 cut(s) 137, 278, 476, 1117, 1366, 1525
BstSCI CCNGG 2 cut(s) 1087, 1238
BstSFI CTRYAG 1 cut(s) 125
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 6 cut(s) 39, 58, 187, 207, 517, 520
BstV2I GAAGAC 1 cut(s) 1515
BstX2I RGATCY 1 cut(s) 1330
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 1330
Bsu36I CCTNAGG 1 cut(s) 854
BsuI GTATCC 2 cut(s) 62, 865
BsuRI GGCC 1 cut(s) 1074
BtgI CCRYGG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 3 cut(s) 449, 658, 1367
Cac8I GCNNGC 4 cut(s) 276, 470, 1018, 1523
CfoI GCGC 2 cut(s) 99, 489
Cfr13I GGNCC 1 cut(s) 794
Csp6I GTAC 4 cut(s) 32, 1117, 1153, 1372
CviAII CATG 9 cut(s) 58, 134, 275, 473, 599, 674, 1114, 1363, 1522
CviQI GTAC 4 cut(s) 32, 1117, 1153, 1372
DdeI CTNAG 3 cut(s) 854, 1347, 1466
DpnI GATC 7 cut(s) 194, 314, 515, 843, 879, 1290, 1332
DpnII GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 2 cut(s) 1187, 1443
EarI CTCTTC 2 cut(s) 1187, 1443
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 3 cut(s) 57, 765, 1255
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 3 cut(s) 123, 539, 987
Eco81I CCTNAGG 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 1238
EcoT14I CCWWGG 3 cut(s) 57, 765, 1255
ErhI CCWWGG 3 cut(s) 57, 765, 1255
FaeI CATG 9 cut(s) 61, 137, 278, 476, 602, 677, 1117, 1366, 1525
FalI AAGNNNNNCTT 2 cut(s) 1440, 1472
FaqI GGGAC 2 cut(s) 1221, 1424
FatI CATG 9 cut(s) 57, 133, 274, 472, 598, 673, 1113, 1362, 1521
FauI CCCGC 1 cut(s) 1518
FauNDI CATATG 1 cut(s) 402
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 7 cut(s) 28, 72, 176, 221, 531, 534, 1211
Fsp4HI GCNGC 7 cut(s) 28, 72, 176, 221, 531, 534, 1211
FspBI CTAG 4 cut(s) 537, 777, 998, 1145
GlaI GCGC 2 cut(s) 98, 488
GluI GCNGC 7 cut(s) 28, 72, 176, 221, 531, 534, 1211
GsuI CTGGAG 2 cut(s) 621, 1355
HaeIII GGCC 1 cut(s) 1074
HapII CCGG 1 cut(s) 1089
HhaI GCGC 2 cut(s) 99, 489
Hin1II CATG 9 cut(s) 61, 137, 278, 476, 602, 677, 1117, 1366, 1525
Hin6I GCGC 2 cut(s) 97, 487
HinP1I GCGC 2 cut(s) 97, 487
HindIII AAGCTT 1 cut(s) 1244
HinfI GANTC 8 cut(s) 209, 243, 410, 646, 677, 1159, 1304, 1478
HpaII CCGG 1 cut(s) 1089
HphI GGTGA 3 cut(s) 130, 841, 1103
Hpy166II GTNNAC 1 cut(s) 849
Hpy188I TCNGA 8 cut(s) 18, 103, 336, 1027, 1309, 1399, 1469, 1483
Hpy8I GTNNAC 1 cut(s) 849
HpyAV CCTTC 7 cut(s) 113, 208, 238, 331, 907, 1321, 1443
HpyCH4III ACNGT 5 cut(s) 22, 527, 1320, 1371, 1395
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 539, 735, 1013, 1219, 1228
HpyF3I CTNAG 3 cut(s) 854, 1347, 1466
Hsp92II CATG 9 cut(s) 61, 137, 278, 476, 602, 677, 1117, 1366, 1525
HspAI GCGC 2 cut(s) 97, 487
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
LguI GCTCTTC 1 cut(s) 1187
LmnI GCTCC 4 cut(s) 217, 353, 640, 922
Lsp1109I GCAGC 6 cut(s) 39, 58, 187, 207, 517, 520
LweI GCATC 5 cut(s) 461, 994, 1165, 1415, 1417
MaeI CTAG 4 cut(s) 537, 777, 998, 1145
MaeIII GTNAC 6 cut(s) 136, 653, 686, 817, 1365, 1475
MalI GATC 7 cut(s) 194, 314, 515, 843, 879, 1290, 1332
MboI GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 1 cut(s) 1330
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 6 cut(s) 203, 281, 608, 617, 691, 697
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 6 cut(s) 218, 237, 655, 1168, 1313, 1472
MmeI TCCRAC 2 cut(s) 1287, 1506
Mox20I TGGCCA 1 cut(s) 1074
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 8 cut(s) 237, 321, 348, 972, 1082, 1184, 1248, 1359
MslI CAYNNNNRTG 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 1 cut(s) 1089
MspR9I CCNGG 2 cut(s) 1089, 1240
MunI CAATTG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 1240
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 6 cut(s) 68, 539, 735, 1013, 1219, 1228
NciI CCSGG 1 cut(s) 1089
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 402
NdeII GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
NlaIII CATG 9 cut(s) 61, 137, 278, 476, 602, 677, 1117, 1366, 1525
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 5 cut(s) 136, 653, 817, 1365, 1475
NspI RCATGY 6 cut(s) 137, 278, 476, 1117, 1366, 1525
OliI CACNNNNGTG 1 cut(s) 815
PaeI GCATGC 2 cut(s) 278, 1525
PciI ACATGT 2 cut(s) 1113, 1362
PciSI GCTCTTC 1 cut(s) 1187
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PfeI GAWTC 2 cut(s) 410, 677
PkrI GCNGC 7 cut(s) 29, 73, 177, 222, 532, 535, 1212
PleI GAGTC 6 cut(s) 217, 237, 654, 1167, 1312, 1472
PpsI GAGTC 6 cut(s) 217, 237, 654, 1167, 1312, 1472
PscI ACATGT 2 cut(s) 1113, 1362
PsiI TTATAA 2 cut(s) 696, 702
Psp6I CCWGG 1 cut(s) 1238
PspGI CCWGG 1 cut(s) 1238
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 794
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 1330
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 4 cut(s) 33, 1118, 1154, 1373
RsaNI GTAC 4 cut(s) 32, 1117, 1153, 1372
RseI CAYNNNNRTG 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 1187
SaqAI TTAA 8 cut(s) 237, 321, 348, 972, 1082, 1184, 1248, 1359
SatI GCNGC 7 cut(s) 28, 72, 176, 221, 531, 534, 1211
Sau3AI GATC 7 cut(s) 192, 312, 513, 841, 877, 1288, 1330
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 6 cut(s) 218, 237, 655, 1168, 1313, 1472
ScrFI CCNGG 2 cut(s) 1089, 1240
SfaNI GCATC 5 cut(s) 461, 994, 1165, 1415, 1417
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 245, 985
SmoI CTYRAG 2 cut(s) 245, 985
SphI GCATGC 2 cut(s) 278, 1525
Sse9I AATT 6 cut(s) 203, 281, 608, 617, 691, 697
SsiI CCGC 4 cut(s) 48, 466, 1210, 1525
SspMI CTAG 4 cut(s) 537, 777, 998, 1145
StyD4I CCNGG 2 cut(s) 1087, 1238
StyI CCWWGG 3 cut(s) 57, 765, 1255
TaaI ACNGT 5 cut(s) 22, 527, 1320, 1371, 1395
TaqI TCGA 2 cut(s) 212, 573
TaqII GACCGA 1 cut(s) 782
TasI AATT 6 cut(s) 203, 281, 608, 617, 691, 697
TatI WGTACW 2 cut(s) 1152, 1371
TauI GCSGC 1 cut(s) 1213
TfiI GAWTC 2 cut(s) 410, 677
Tru1I TTAA 8 cut(s) 237, 321, 348, 972, 1082, 1184, 1248, 1359
Tru9I TTAA 8 cut(s) 237, 321, 348, 972, 1082, 1184, 1248, 1359
TscAI CASTG 3 cut(s) 449, 658, 1374
TseFI GTSAC 5 cut(s) 136, 653, 817, 1365, 1475
TseI GCWGC 6 cut(s) 27, 71, 175, 220, 530, 533
Tsp45I GTSAC 5 cut(s) 136, 653, 817, 1365, 1475
TspDTI ATGAA 4 cut(s) 137, 1155, 1329, 1395
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 3 cut(s) 449, 658, 1374
VpaK11BI GGWCC 1 cut(s) 794
XagI CCTNNNNNAGG 1 cut(s) 418
XapI RAATTY 3 cut(s) 281, 608, 617
XceI RCATGY 6 cut(s) 137, 278, 476, 1117, 1366, 1525
XspI CTAG 4 cut(s) 537, 777, 998, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.