AT2G04780

FASCICLIN-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007968
Physical Location & Seq
Forward (+)
1676717 .. 1678455
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04780.2

Sequence Viewer

Length: 765 bp
ATGGCAAAGATGCAATTATCAATCTTTATCGCTGTCGTTGCGCTTATCGTCTGCTCTGCATCTGCTAAAACCGCAAGCCCTCCAGCTCCAGTGCTGCCACCGACACCAGCTCCAGCACCAGCCCCGGAAAATGTGAATCTCACCGAGCTTTTAAGTGTAGCTGGTCCGTTCCACACATTCCTCGACTACCTTCTCTCGACTGGAGTCATTGAGACTTTCCAAAACCAAGCTAACAACACTGAGGAAGGCATCACAATCTTTGTCCCTAAAGATGATGCTTTCAAAGCTCAGAAGAATCCTCCTTTGTCAAATCTCACAAAGGATCAGCTTAAGCAGCTTGTTCTCTTCCATGCTCTGCCTCATTACTATTCGCTTTCGGAATTCAAGAACTTGAGCCAATCTGGTCCAGTGAGCACCTTTGCTGGTGGTCAATACTCCTTGAAATTCACTGATGTTTCTGGCACGGTTAGGATTGATTCTTTATGGACCAGGACTAAAGTCAGCAGCAGTGTTTTCTCCACTGACCCTGTTGCGGTTTACCAAGTGAACCGCGTGCTTCTACCCGAAGCAATCTTTGGTACTGATGTCCCTCCAATGCCTGCTCCAGCTCCTGCTCCTATCGTTAGTGCTCCTTCGGATTCTCCTTCAGTTGCTGATTCTGAAGGAGCTTCTTCACCAAAGTCCTCACACAAGAACTCCGGACAAAAGCTGCTACTTGCACCAATCTCCATGGTTATTTCCGGTTTGGTGGCATTGTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

254

Amino Acids

26.85

Weight (kDa)

6.06

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 56 - 188 1.4e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 552
AccIII TCCGGA 1 cut(s) 698
AciI CCGC 3 cut(s) 72, 533, 550
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 380, 443
AcuI CTGAAG 2 cut(s) 630, 681
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 532
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 283, 385, 442
AjnI CCWGG 1 cut(s) 488
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
Alw21I GWGCWC 2 cut(s) 416, 631
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 330
AlwNI CAGNNNCTG 2 cut(s) 611, 653
Aor13HI TCCGGA 1 cut(s) 698
ApeKI GCWGC 4 cut(s) 94, 334, 504, 709
ApoI RAATTY 2 cut(s) 380, 443
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 3 cut(s) 164, 404, 486
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 133, 666
AvaII GGWCC 3 cut(s) 164, 404, 486
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
Bbv12I GWGCWC 2 cut(s) 416, 631
BbvI GCAGC 4 cut(s) 81, 346, 516, 696
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 4 cut(s) 95, 335, 505, 710
BlsI GCNGC 4 cut(s) 96, 336, 506, 711
Bme1390I CCNGG 2 cut(s) 125, 490
Bme18I GGWCC 3 cut(s) 164, 404, 486
BmgT120I GGNCC 3 cut(s) 164, 404, 486
BmrFI CCNGG 2 cut(s) 125, 490
BmsI GCATC 3 cut(s) 68, 258, 265
BoxI GACNNNNGTC 2 cut(s) 203, 497
BpmI CTGGAG 5 cut(s) 66, 72, 96, 222, 588
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 123, 729
BsaWI WCCGGW 2 cut(s) 698, 740
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 680, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 3 cut(s) 89, 205, 407
BseAI TCCGGA 1 cut(s) 698
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 123, 729
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMII CTCAG 2 cut(s) 231, 302
BseNI ACTGG 3 cut(s) 89, 205, 407
BseXI GCAGC 4 cut(s) 81, 346, 516, 696
Bsh1236I CGCG 1 cut(s) 552
BsiHKAI GWGCWC 2 cut(s) 416, 631
BsiSI CCGG 3 cut(s) 125, 699, 741
BslFI GGGAC 2 cut(s) 248, 572
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 248, 572
Bsp1286I GDGCHC 2 cut(s) 416, 631
Bsp13I TCCGGA 1 cut(s) 698
Bsp143I GATC 1 cut(s) 322
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 3 cut(s) 72, 533, 550
BspCNI CTCAG 2 cut(s) 232, 301
BspEI TCCGGA 1 cut(s) 698
BspFNI CGCG 1 cut(s) 552
BspPI GGATC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 329
BsrI ACTGG 3 cut(s) 89, 205, 407
BssECI CCNNGG 2 cut(s) 123, 729
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 76, 554, 600
BstDEI CTNAG 2 cut(s) 240, 288
BstDSI CCRYGG 1 cut(s) 729
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 4 cut(s) 38, 71, 284, 334
BstNI CCWGG 1 cut(s) 490
BstPAI GACNNNNGTC 2 cut(s) 203, 497
BstSCI CCNGG 2 cut(s) 123, 488
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 81, 346, 516, 696
BtgI CCRYGG 1 cut(s) 729
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 6 cut(s) 96, 237, 414, 447, 514, 519
Cac8I GCNNGC 3 cut(s) 76, 554, 600
CaiI CAGNNNCTG 2 cut(s) 611, 653
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 164, 404, 486
Csp6I GTAC 1 cut(s) 579
CviAII CATG 2 cut(s) 350, 730
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 240, 288
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 729
Eco47I GGWCC 3 cut(s) 164, 404, 486
Eco57I CTGAAG 2 cut(s) 630, 681
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 2 cut(s) 353, 733
FaiI YATR 3 cut(s) 351, 484, 731
FaqI GGGAC 2 cut(s) 248, 572
FatI CATG 2 cut(s) 349, 729
Fnu4HI GCNGC 4 cut(s) 95, 335, 505, 710
Fsp4HI GCNGC 4 cut(s) 95, 335, 505, 710
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 95, 335, 505, 710
GsuI CTGGAG 5 cut(s) 66, 72, 96, 222, 588
HapII CCGG 3 cut(s) 125, 699, 741
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 353, 733
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 6 cut(s) 136, 204, 295, 476, 638, 656
HpaII CCGG 3 cut(s) 125, 699, 741
HphI GGTGA 2 cut(s) 133, 666
Hpy166II GTNNAC 2 cut(s) 538, 547
Hpy188I TCNGA 4 cut(s) 291, 379, 637, 661
Hpy188III TCNNGA 3 cut(s) 196, 385, 699
Hpy8I GTNNAC 2 cut(s) 538, 547
HpyAV CCTTC 5 cut(s) 200, 239, 642, 654, 656
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 13, 59, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 71, 284, 334
HpyF3I CTNAG 2 cut(s) 240, 288
Hsp92II CATG 2 cut(s) 353, 733
HspAI GCGC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 698
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 7 cut(s) 91, 115, 607, 613, 619, 634, 665
Lsp1109I GCAGC 4 cut(s) 81, 346, 516, 696
LweI GCATC 3 cut(s) 68, 258, 265
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 3 cut(s) 304, 337, 663
MhlI GDGCHC 2 cut(s) 416, 631
MluCI AATT 3 cut(s) 14, 380, 443
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 7 cut(s) 90, 191, 235, 309, 369, 600, 694
MroI TCCGGA 1 cut(s) 698
MseI TTAA 2 cut(s) 152, 330
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 3 cut(s) 125, 699, 741
MspR9I CCNGG 2 cut(s) 125, 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 4 cut(s) 38, 71, 284, 334
NciI CCSGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 729
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 353, 733
PfeI GAWTC 5 cut(s) 136, 295, 476, 638, 656
PkrI GCNGC 4 cut(s) 96, 336, 506, 711
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 2 cut(s) 203, 497
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspPI GGNCC 3 cut(s) 164, 404, 486
PstNI CAGNNNCTG 2 cut(s) 611, 653
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 152, 330
SatI GCNGC 4 cut(s) 95, 335, 505, 710
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 3 cut(s) 164, 404, 486
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 125, 490
SduI GDGCHC 2 cut(s) 416, 631
SfaNI GCATC 3 cut(s) 68, 258, 265
SinI GGWCC 3 cut(s) 164, 404, 486
SmlI CTYRAG 2 cut(s) 329, 391
SmoI CTYRAG 2 cut(s) 329, 391
Sse9I AATT 3 cut(s) 14, 380, 443
SsiI CCGC 3 cut(s) 72, 533, 550
StyD4I CCNGG 2 cut(s) 123, 488
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 183, 197
TasI AATT 3 cut(s) 14, 380, 443
TfiI GAWTC 5 cut(s) 136, 295, 476, 638, 656
Tru1I TTAA 2 cut(s) 152, 330
Tru9I TTAA 2 cut(s) 152, 330
TscAI CASTG 6 cut(s) 96, 244, 414, 454, 514, 526
TseI GCWGC 4 cut(s) 94, 334, 504, 709
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 6 cut(s) 96, 244, 414, 454, 514, 526
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 3 cut(s) 164, 404, 486
XapI RAATTY 2 cut(s) 380, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.