Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006282.1

Orthogroup ID

OG0007968

Physical Location & Seq

Genomic Coordinates Reverse (-)

41994 .. 43763

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006282.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgagaagaagaggaaaagatggtaatgatgggaccatttcagcctttattgcattagcaaactcttcaagaacccattttctctctgagttcctctgcttgaggaatttggagaatctggccagatacagaaagtatcattcaatttttggaacaatggaacttcctgtggttttcatggctgtactggttctgtgttcatcagcagcatatgctcaaactgccccatctccctcgctaacccctactccagcgccagccccagcccccgaattcgtgaacctcacagagttgttctctgtggctggcccattcaacaccttccttggctaccttgagtcaaccaaagtgattgagacattccaagaccaagccaacaagactgaggaaggcataaccatctttgtcccaaaagatagtgcttttgcatctcttaaaaaaccttctctgtccaatctcaccgctgaccagctcaaatctctgtttctattccatgctttgtcacattactactctttggccgatttcagaaacctcagcaatatgagccccgtggctacaatggccgggggacaatacagtttgaacttcactgatgtttcaggcactgcgcatcttacctcgggatggtcagtcacaaaagtgagcagcagtgtgcattccacagaccctgttgctgtttaccaagttgacaaggttcttcttccggaggcaattttcggtactgacattcccccaaccgcagccccagcaccagctccggaaattgctccagctgcagatgctccaaaagctgcagacagtgatgacttgtctccaggatcctcaccagataaatcttcttcttacagaattatgagttggggtcgattgattttggcaatctcaggtggactggtccttttcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

303

Amino Acids

32.45

Weight (kDa)

5.86

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04780 AT2G04780
fragaria_vesca	FvH4_6g41530 FvH4_6g41530 FvH4_6g41530
malus_domestica	MD09G1119100.v1.1 MD17G1110000.v1.1
prunus_persica	Prupe.3G205100_v2.0.a1 Prupe.3G205100_v2.0.a1 Prupe.3G205100_v2.0.a1
pyrus_communis	pycom09g04400 pycom17g10230
rosa_chinensis	RchiOBHm_Chr2g0157201
rosa_laevigata	RLG00000020971
rosa_multiflora	Rmu_sc0006282.1_g000008
rosa_roxburghii	Rroxscaffold_2G00092420
rosa_rugosa	Rorug02G0458200 Rorug02G0458300
rosa_samantha	Rh2AG523800 Rh2BG538200 Rh2CG508600 Rh2DG547100
rosa_wichuraiana	Rw2G043320 Rw2G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
AccIII	TCCGGA	2 cut(s)	706, 760
AciI	CCGC	2 cut(s)	462, 741
AclWI	GGATC	2 cut(s)	816, 829
AcoI	YGGCCR	3 cut(s)	120, 519, 564
AcsI	RAATTY	2 cut(s)	106, 272
AfaI	GTAC	2 cut(s)	186, 724
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	4 cut(s)	69, 144, 316, 586
AjnI	CCWGG	1 cut(s)	817
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	4 cut(s)	472, 758, 776, 794
AluI	AGCT	4 cut(s)	472, 758, 776, 794
Alw26I	GTCTC	2 cut(s)	350, 819
AlwI	GGATC	2 cut(s)	816, 829
AlwNI	CAGNNNCTG	2 cut(s)	608, 671
Ama87I	CYCGRG	1 cut(s)	622
Aor13HI	TCCGGA	2 cut(s)	706, 760
AoxI	GGCC	4 cut(s)	120, 307, 519, 564
ApeKI	GCWGC	5 cut(s)	206, 648, 743, 776, 794
ApoI	RAATTY	2 cut(s)	106, 272
AspLEI	GCGC	2 cut(s)	256, 613
AspS9I	GGNCC	3 cut(s)	33, 308, 898
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	451, 819
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	33, 898
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	536
BbvI	GCAGC	5 cut(s)	218, 660, 755, 763, 781
BccI	CCATC	5 cut(s)	14, 23, 235, 407, 621
BciT130I	CCWGG	1 cut(s)	819
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	350, 819
BfmI	CTRYAG	2 cut(s)	777, 795
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	5 cut(s)	207, 649, 744, 777, 795
BlsI	GCNGC	5 cut(s)	208, 650, 745, 778, 796
Bme1390I	CCNGG	2 cut(s)	568, 819
Bme18I	GGWCC	2 cut(s)	33, 898
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	33, 308, 898
BmiI	GGNNCC	2 cut(s)	34, 823
BmrFI	CCNGG	2 cut(s)	568, 819
BmsI	GCATC	3 cut(s)	437, 622, 772
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	3 cut(s)	234, 756, 801
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	121, 356
BpuMI	CCSGG	1 cut(s)	568
BsaJI	CCNNGG	4 cut(s)	325, 552, 567, 621
BsaWI	WCCGGW	2 cut(s)	706, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	192, 900
BseAI	TCCGGA	2 cut(s)	706, 760
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	325, 552, 567, 621
BseGI	GGATG	1 cut(s)	632
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	78, 375, 550, 900
BseNI	ACTGG	2 cut(s)	192, 900
BseXI	GCAGC	5 cut(s)	218, 660, 755, 763, 781
BseYI	CCCAGC	2 cut(s)	262, 748
BshFI	GGCC	4 cut(s)	122, 309, 521, 566
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	567, 707, 761
BslFI	GGGAC	3 cut(s)	46, 392, 585
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	350, 819
BsmFI	GGGAC	3 cut(s)	46, 392, 585
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	4 cut(s)	122, 309, 521, 566
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp13I	TCCGGA	2 cut(s)	706, 760
Bsp143I	GATC	1 cut(s)	821
BspACI	CCGC	2 cut(s)	462, 741
BspANI	GGCC	4 cut(s)	122, 309, 521, 566
BspCNI	CTCAG	4 cut(s)	79, 376, 549, 899
BspEI	TCCGGA	2 cut(s)	706, 760
BspLI	GGNNCC	2 cut(s)	34, 823
BspMAI	CTGCAG	2 cut(s)	781, 799
BspPI	GGATC	2 cut(s)	816, 829
BsrI	ACTGG	2 cut(s)	192, 900
BssECI	CCNNGG	4 cut(s)	325, 552, 567, 621
BssMI	GATC	1 cut(s)	821
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	581, 803
Bst6I	CTCTTC	2 cut(s)	4, 70
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	258, 307
BstDEI	CTNAG	4 cut(s)	87, 384, 536, 886
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	1 cut(s)	632
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 613
BstKTI	GATC	1 cut(s)	824
BstMAI	GTCTC	2 cut(s)	350, 819
BstMBI	GATC	1 cut(s)	821
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 212, 221, 546, 563, 749, 776, 782, 791
BstNI	CCWGG	1 cut(s)	819
BstSCI	CCNGG	2 cut(s)	566, 817
BstSFI	CTRYAG	2 cut(s)	777, 795
BstV1I	GCAGC	5 cut(s)	218, 660, 755, 763, 781
BstX2I	RGATCY	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	821
BsuRI	GGCC	4 cut(s)	122, 309, 521, 566
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	632
BtsI	GCAGTG	2 cut(s)	606, 658
BtsIMutI	CAGTG	4 cut(s)	591, 606, 658, 808
Cac8I	GCNNGC	2 cut(s)	258, 307
CaiI	CAGNNNCTG	2 cut(s)	608, 671
CfoI	GCGC	2 cut(s)	256, 613
Cfr13I	GGNCC	3 cut(s)	33, 308, 898
Csp6I	GTAC	2 cut(s)	185, 723
CviAII	CATG	2 cut(s)	178, 494
CviQI	GTAC	2 cut(s)	185, 723
DdeI	CTNAG	4 cut(s)	87, 384, 536, 886
DpnI	GATC	1 cut(s)	823
DpnII	GATC	1 cut(s)	821
EaeI	YGGCCR	3 cut(s)	120, 519, 564
Eam1104I	CTCTTC	2 cut(s)	4, 70
EarI	CTCTTC	2 cut(s)	4, 70
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	551
Eco47I	GGWCC	2 cut(s)	33, 898
Eco88I	CYCGRG	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	181, 497
FaiI	YATR	7 cut(s)	179, 211, 213, 395, 495, 545, 857
FaqI	GGGAC	3 cut(s)	46, 392, 585
FatI	CATG	2 cut(s)	177, 493
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	5 cut(s)	207, 649, 744, 777, 795
FokI	GGATG	1 cut(s)	639
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	5 cut(s)	207, 649, 744, 777, 795
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	2 cut(s)	255, 612
GluI	GCNGC	5 cut(s)	207, 649, 744, 777, 795
GsaI	CCCAGC	2 cut(s)	266, 752
GsuI	CTGGAG	3 cut(s)	234, 756, 801
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	122, 309, 521, 566
HapII	CCGG	3 cut(s)	567, 707, 761
HhaI	GCGC	2 cut(s)	256, 613
Hin1II	CATG	2 cut(s)	181, 497
Hin6I	GCGC	2 cut(s)	254, 611
HinP1I	GCGC	2 cut(s)	254, 611
HincII	GTYRAC	2 cut(s)	342, 691
HindII	GTYRAC	2 cut(s)	342, 691
HinfI	GANTC	2 cut(s)	115, 338
HpaII	CCGG	3 cut(s)	567, 707, 761
HphI	GGTGA	2 cut(s)	451, 819
Hpy166II	GTNNAC	5 cut(s)	280, 342, 682, 691, 893
Hpy188I	TCNGA	2 cut(s)	88, 530
Hpy188III	TCNNGA	5 cut(s)	69, 277, 624, 707, 761
Hpy8I	GTNNAC	5 cut(s)	280, 342, 682, 691, 893
HpyAV	CCTTC	3 cut(s)	331, 383, 453
HpyCH4III	ACNGT	2 cut(s)	581, 803
HpyCH4V	TGCA	5 cut(s)	53, 428, 658, 779, 797
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 212, 221, 546, 563, 749, 776, 782, 791
HpyF3I	CTNAG	4 cut(s)	87, 384, 536, 886
Hsp92II	CATG	2 cut(s)	181, 497
HspAI	GCGC	2 cut(s)	254, 611
Kpn2I	TCCGGA	2 cut(s)	706, 760
Kzo9I	GATC	1 cut(s)	821
LmnI	GCTCC	3 cut(s)	763, 775, 790
Lsp1109I	GCAGC	5 cut(s)	218, 660, 755, 763, 781
LweI	GCATC	3 cut(s)	437, 622, 772
MaeIII	GTNAC	2 cut(s)	501, 634
MalI	GATC	1 cut(s)	823
MboI	GATC	1 cut(s)	821
MboII	GAAGA	7 cut(s)	18, 21, 57, 692, 695, 831, 834
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	6 cut(s)	106, 144, 272, 714, 765, 852
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	347
Mox20I	TGGCCA	1 cut(s)	122
MroI	TCCGGA	2 cut(s)	706, 760
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	641
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	464, 776
MspI	CCGG	3 cut(s)	567, 707, 761
MspR9I	CCNGG	2 cut(s)	568, 819
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	9 cut(s)	50, 212, 221, 546, 563, 749, 776, 782, 791
NciI	CCSGG	1 cut(s)	568
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	821
NlaIII	CATG	2 cut(s)	181, 497
NlaIV	GGNNCC	2 cut(s)	34, 823
NmuCI	GTSAC	2 cut(s)	501, 634
NsbI	TGCGCA	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	641
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	5 cut(s)	208, 650, 745, 778, 796
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	817
PspFI	CCCAGC	2 cut(s)	262, 748
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	2 cut(s)	34, 823
PspPI	GGNCC	3 cut(s)	33, 308, 898
PstI	CTGCAG	2 cut(s)	781, 799
PstNI	CAGNNNCTG	2 cut(s)	608, 671
PsuI	RGATCY	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	186, 724
RsaNI	GTAC	2 cut(s)	185, 723
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	5 cut(s)	207, 649, 744, 777, 795
Sau3AI	GATC	1 cut(s)	821
Sau96I	GGNCC	3 cut(s)	33, 308, 898
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	568, 819
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	3 cut(s)	437, 622, 772
SfcI	CTRYAG	2 cut(s)	777, 795
SinI	GGWCC	2 cut(s)	33, 898
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	100, 335
SmoI	CTYRAG	2 cut(s)	100, 335
Sse9I	AATT	6 cut(s)	106, 144, 272, 714, 765, 852
SsiI	CCGC	2 cut(s)	462, 741
StyD4I	CCNGG	2 cut(s)	566, 817
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	581, 803
TaqI	TCGA	1 cut(s)	868
TasI	AATT	6 cut(s)	106, 144, 272, 714, 765, 852
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	4 cut(s)	598, 613, 658, 808
TseFI	GTSAC	2 cut(s)	501, 634
TseI	GCWGC	5 cut(s)	206, 648, 743, 776, 794
Tsp45I	GTSAC	2 cut(s)	501, 634
TspDTI	ATGAA	2 cut(s)	166, 189
TspRI	CASTG	4 cut(s)	598, 613, 658, 808
VpaK11BI	GGWCC	2 cut(s)	33, 898
XapI	RAATTY	2 cut(s)	106, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.