Rroxscaffold_2G00092420

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007968
Physical Location & Seq
Reverse (-)
13950824 .. 13953707
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092420.1

Sequence Viewer

Length: 951 bp
ATGGTGATGGCCGGTGCGGTGCCATCTCTCGAGTGTTCGTTGGATCTTGCCAACGATGAAGGTGCTTTGGGTTGGCGTGATGGTTGCGGCGTGGACAACAAAATCTTCGCCGACAACCGGGAAACGTTGGTGGAGACTGCTAGGAATTTGGAGAATCTGGTCAGATACAGAAAGTATCATTCAATTTTTGGAACAATGGAACTTCCTGTGGTTTTCATGGCTGTACTGGTTCTGTGTTCATCAGCAGCATATGCTCAAACTGCCCCCTCTCCCTCGCTAACCCCCACTCCAGCGCCAGCCCCAGCCCCCGAATTCGTGAACCTCACAGATTTGTTCTCTGTGGCTGGCCCATTCCACACCTTCCTTGGCTACCTTGAGTCAACCAAAGTGATTGAGACATTCCAAGACCAAGCCAACAAGACTGAGGAAGGCATAACCATCTTTGTCCCCAAAGATAGTGCTTTCGCATCTCTTAAAAAACCGTCTCTGTCCAATCTCACCGCTGACCAGCTCAAATCTCTGTTTCTATTCCATGCTTTGCCAAATTACTACTCTTTGGCCGATTTCAGAAACCTCAGCAATATGAGCCCCGTGGCTACAATGGCCGGGGCACAATACAGTTTGAACTTCACTGATGTTTCAGGCACTGCGCATCTTACCTCGGGATGGTCAGTCACAAAAGTGAGCAGCAGTGTGCATTCCACAGACCCTGTTGCTGTTTACCAAGTTGACAAGGTTCTTCTTCCGGAGGCAATCTTCGGTACTGACATTCCCCCAACCGCAGCCCCAGCACCAGCTCCGGAAATTGCTCCAGCTGCAGATGCTCCAAAAGCCGCAGACAGTGATGACTTGTCTCCAGGATCCTCACCAGATAAATCTTCTTCTTACAGAATTATGAGTTGGGGTCAATTGGTTTTGGCAATCTCAGGTGGACTGGTCCTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

316

Amino Acids

33.62

Weight (kDa)

4.7

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 117 - 249 5.1e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 19
AccIII TCCGGA 2 cut(s) 745, 799
AciI CCGC 5 cut(s) 17, 87, 501, 780, 834
AclI AACGTT 1 cut(s) 125
AclWI GGATC 3 cut(s) 51, 855, 868
AcoI YGGCCR 3 cut(s) 9, 558, 603
AcsI RAATTY 2 cut(s) 145, 311
AfaI GTAC 2 cut(s) 225, 763
AfiI CCNNNNNNNGG 2 cut(s) 117, 666
AgsI TTSAA 2 cut(s) 183, 625
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 883, 915
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 3 cut(s) 511, 797, 815
AluI AGCT 3 cut(s) 511, 797, 815
Alw26I GTCTC 4 cut(s) 128, 389, 489, 858
AlwI GGATC 3 cut(s) 51, 855, 868
AlwNI CAGNNNCTG 2 cut(s) 647, 710
Ama87I CYCGRG 2 cut(s) 29, 661
Aor13HI TCCGGA 2 cut(s) 745, 799
AoxI GGCC 4 cut(s) 9, 346, 558, 603
ApeKI GCWGC 4 cut(s) 245, 687, 782, 815
ApoI RAATTY 2 cut(s) 145, 311
AspLEI GCGC 2 cut(s) 295, 652
AspS9I GGNCC 2 cut(s) 347, 937
AsuC2I CCSGG 2 cut(s) 119, 607
AsuHPI GGTGA 3 cut(s) 16, 490, 858
AvaI CYCGRG 2 cut(s) 29, 661
AvaII GGWCC 1 cut(s) 937
BaeGI GKGCMC 1 cut(s) 613
BamHI GGATCC 1 cut(s) 860
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 590
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 4 cut(s) 257, 699, 794, 802
BccI CCATC 4 cut(s) 31, 74, 446, 660
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 858
BcnI CCSGG 2 cut(s) 119, 607
BcoDI GTCTC 4 cut(s) 128, 389, 489, 858
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 6 cut(s) 88, 246, 688, 783, 816, 834
BlsI GCNGC 6 cut(s) 89, 247, 689, 784, 817, 835
Bme1390I CCNGG 3 cut(s) 119, 607, 858
Bme18I GGWCC 1 cut(s) 937
BmeT110I CYCGRG 2 cut(s) 29, 661
BmgT120I GGNCC 2 cut(s) 347, 937
BmiI GGNNCC 2 cut(s) 21, 862
BmrFI CCNGG 3 cut(s) 119, 607, 858
BmsI GCATC 3 cut(s) 476, 661, 811
BpmI CTGGAG 3 cut(s) 273, 795, 840
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 119, 607
BsaJI CCNNGG 4 cut(s) 364, 591, 606, 660
BsaWI WCCGGW 2 cut(s) 745, 799
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 666
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 231, 939
BseAI TCCGGA 2 cut(s) 745, 799
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 4 cut(s) 364, 591, 606, 660
BseGI GGATG 1 cut(s) 671
BseLI CCNNNNNNNGG 2 cut(s) 117, 666
BseMII CTCAG 3 cut(s) 414, 589, 939
BseNI ACTGG 2 cut(s) 231, 939
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 4 cut(s) 257, 699, 794, 802
BseYI CCCAGC 2 cut(s) 301, 787
BshFI GGCC 4 cut(s) 11, 348, 560, 605
BshNI GGYRCC 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 29, 661
BsiSI CCGG 5 cut(s) 12, 118, 606, 746, 800
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 117, 666
BsmAI GTCTC 4 cut(s) 128, 389, 489, 858
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 4 cut(s) 11, 348, 560, 605
BsoBI CYCGRG 2 cut(s) 29, 661
Bsp1286I GDGCHC 2 cut(s) 590, 613
Bsp13I TCCGGA 2 cut(s) 745, 799
Bsp143I GATC 2 cut(s) 43, 860
BspACI CCGC 5 cut(s) 17, 87, 501, 780, 834
BspANI GGCC 4 cut(s) 11, 348, 560, 605
BspCNI CTCAG 3 cut(s) 415, 588, 938
BspEI TCCGGA 2 cut(s) 745, 799
BspLI GGNNCC 2 cut(s) 21, 862
BspMAI CTGCAG 1 cut(s) 820
BspPI GGATC 3 cut(s) 51, 855, 868
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 231, 939
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 364, 591, 606, 660
BssMI GATC 2 cut(s) 43, 860
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 483, 620, 842
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 297, 346
BstDEI CTNAG 3 cut(s) 423, 575, 925
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 671
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 295, 652
BstKTI GATC 2 cut(s) 46, 863
BstMAI GTCTC 4 cut(s) 128, 389, 489, 858
BstMBI GATC 2 cut(s) 43, 860
BstMWI GCNNNNNNNGC 8 cut(s) 251, 260, 585, 602, 788, 815, 821, 830
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 3 cut(s) 117, 605, 856
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 4 cut(s) 257, 699, 794, 802
BstX2I RGATCY 2 cut(s) 43, 860
BstYI RGATCY 2 cut(s) 43, 860
BsuRI GGCC 4 cut(s) 11, 348, 560, 605
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 671
BtsI GCAGTG 2 cut(s) 645, 697
BtsIMutI CAGTG 4 cut(s) 630, 645, 697, 847
Cac8I GCNNGC 2 cut(s) 297, 346
CaiI CAGNNNCTG 2 cut(s) 647, 710
CfoI GCGC 2 cut(s) 295, 652
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 347, 937
Csp6I GTAC 2 cut(s) 224, 762
CviAII CATG 2 cut(s) 217, 533
CviQI GTAC 2 cut(s) 224, 762
DdeI CTNAG 3 cut(s) 423, 575, 925
DpnI GATC 2 cut(s) 45, 862
DpnII GATC 2 cut(s) 43, 860
EaeI YGGCCR 3 cut(s) 9, 558, 603
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 937
Eco88I CYCGRG 2 cut(s) 29, 661
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 220, 536
FaiI YATR 7 cut(s) 218, 250, 252, 434, 534, 584, 896
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 216, 532
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 88, 246, 688, 783, 816, 834
FokI GGATG 1 cut(s) 678
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 6 cut(s) 88, 246, 688, 783, 816, 834
FspBI CTAG 1 cut(s) 141
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 2 cut(s) 294, 651
GluI GCNGC 6 cut(s) 88, 246, 688, 783, 816, 834
GsaI CCCAGC 2 cut(s) 305, 791
GsuI CTGGAG 3 cut(s) 273, 795, 840
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 4 cut(s) 11, 348, 560, 605
HapII CCGG 5 cut(s) 12, 118, 606, 746, 800
HhaI GCGC 2 cut(s) 295, 652
Hin1II CATG 2 cut(s) 220, 536
Hin6I GCGC 2 cut(s) 293, 650
HinP1I GCGC 2 cut(s) 293, 650
HincII GTYRAC 2 cut(s) 381, 730
HindII GTYRAC 2 cut(s) 381, 730
HinfI GANTC 2 cut(s) 154, 377
HpaII CCGG 5 cut(s) 12, 118, 606, 746, 800
HphI GGTGA 3 cut(s) 16, 490, 858
Hpy166II GTNNAC 6 cut(s) 94, 319, 381, 721, 730, 932
Hpy188I TCNGA 2 cut(s) 164, 569
Hpy188III TCNNGA 5 cut(s) 29, 316, 663, 746, 800
Hpy8I GTNNAC 6 cut(s) 94, 319, 381, 721, 730, 932
HpyAV CCTTC 3 cut(s) 53, 370, 422
HpyCH4III ACNGT 3 cut(s) 483, 620, 842
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 697, 818
HpyF10VI GCNNNNNNNGC 8 cut(s) 251, 260, 585, 602, 788, 815, 821, 830
HpyF3I CTNAG 3 cut(s) 423, 575, 925
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 2 cut(s) 220, 536
HspAI GCGC 2 cut(s) 293, 650
Kpn2I TCCGGA 2 cut(s) 745, 799
Kzo9I GATC 2 cut(s) 43, 860
LmnI GCTCC 3 cut(s) 802, 814, 829
Lsp1109I GCAGC 4 cut(s) 257, 699, 794, 802
LweI GCATC 3 cut(s) 476, 661, 811
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 673
MalI GATC 2 cut(s) 45, 862
MboI GATC 2 cut(s) 43, 860
MboII GAAGA 6 cut(s) 97, 731, 734, 748, 870, 873
MfeI CAATTG 1 cut(s) 908
MflI RGATCY 2 cut(s) 43, 860
MhlI GDGCHC 2 cut(s) 590, 613
MluCI AATT 7 cut(s) 145, 183, 311, 544, 804, 891, 908
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 8 cut(s) 277, 283, 332, 418, 584, 670, 742, 874
MroI TCCGGA 2 cut(s) 745, 799
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 680
MspA1I CMGCKG 2 cut(s) 503, 815
MspI CCGG 5 cut(s) 12, 118, 606, 746, 800
MspR9I CCNGG 3 cut(s) 119, 607, 858
MunI CAATTG 1 cut(s) 908
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 8 cut(s) 251, 260, 585, 602, 788, 815, 821, 830
NciI CCSGG 2 cut(s) 119, 607
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 43, 860
NlaIII CATG 2 cut(s) 220, 536
NlaIV GGNNCC 2 cut(s) 21, 862
NmuCI GTSAC 1 cut(s) 673
NsbI TGCGCA 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 29
PctI GAATGC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 6 cut(s) 89, 247, 689, 784, 817, 835
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 2 cut(s) 301, 787
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 2 cut(s) 21, 862
PspPI GGNCC 2 cut(s) 347, 937
PstI CTGCAG 1 cut(s) 820
PstNI CAGNNNCTG 2 cut(s) 647, 710
PsuI RGATCY 2 cut(s) 43, 860
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 225, 763
RsaNI GTAC 2 cut(s) 224, 762
RseI CAYNNNNRTG 1 cut(s) 680
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 6 cut(s) 88, 246, 688, 783, 816, 834
Sau3AI GATC 2 cut(s) 43, 860
Sau96I GGNCC 2 cut(s) 347, 937
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 3 cut(s) 119, 607, 858
SduI GDGCHC 2 cut(s) 590, 613
SfaNI GCATC 3 cut(s) 476, 661, 811
SfcI CTRYAG 1 cut(s) 816
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 937
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 29, 374
SmoI CTYRAG 2 cut(s) 29, 374
Sse9I AATT 7 cut(s) 145, 183, 311, 544, 804, 891, 908
SsiI CCGC 5 cut(s) 17, 87, 501, 780, 834
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 117, 605, 856
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 483, 620, 842
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 30
TasI AATT 7 cut(s) 145, 183, 311, 544, 804, 891, 908
TatI WGTACW 1 cut(s) 223
TauI GCSGC 2 cut(s) 90, 836
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 4 cut(s) 637, 652, 697, 847
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 4 cut(s) 245, 687, 782, 815
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 72, 205, 228
TspRI CASTG 4 cut(s) 637, 652, 697, 847
VpaK11BI GGWCC 1 cut(s) 937
XapI RAATTY 2 cut(s) 145, 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 29
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.