MD09G1119100.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0007968
Physical Location & Seq
Reverse (-)
9184731 .. 9187650
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1119100.v1.1.491

Sequence Viewer

Length: 771 bp
ATGGTACTTCCTGTGGTTTGCATGCTATTGCTTCTGAGTTCTTCAGCAGCATATGCTCAAAAAACCAAACCTCCCTCTCCCTCATTCAGCCCTACTCCAGCCCCCGCCCCAGCGCAAGATTTCGTGAACCTCACGGATTTACTCACTGTGGCCGGCCCATTCCACACCTTCCTTAACTACCTTCAATCCACTAAAGTGCTTGAGACCTTCCAAGACCAAGCCAACAAGACTGAGGAAGGCATAACTATCTTTGTCCCGAAAGACAGTGCCTTCACAGCTCTTAAGAAGCCCTCTTTGTCCAATCTGACCGCCAACCAGCTCAAGTCAGTCATCCTATTCCATGCCTTGCCGCATTACTACACTCTAGCCGACTTCAAAAACCTCAGTGAATCAGGCCCAATTCCTACATTTGCCGGCGGAAGTTACACTTTGAACTTCACTGATGCTTCAGGCTCTGTGCACCTTACCTCAGGATGGTCAGACACAAAAGTAAGCAGCAGCGTGCACTCAACCGATCCTGTTGCAGTTTACCAAGTTGACAAGGTTCTTCTACCTGAGGCAATCTTCGGTACTGACATTCCTCCAACCCCAGCTCCAGCACCAGCTCCAGTTCCTGACACTGCACCAGCTGCGGATGCTCCAACCGCTGACGGAGGCTCATCATCTCCAGGATCTGCACCGGGAAAATCTTCGTCTTACAGGATTATCAGCTGGGGCATTTGGGGTCACTTGGTTTTGGCAGTCTCTGGTGGTCTGGCCTTGATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

257

Amino Acids

26.74

Weight (kDa)

5.58

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 53 - 185 8.2e-23 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 105, 309, 350, 417, 632, 645
AclWI GGATC 2 cut(s) 509, 679
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 2 cut(s) 27, 432
AfaI GTAC 2 cut(s) 6, 571
AfiI CCNNNNNNNGG 1 cut(s) 474
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 185, 376, 433
AjnI CCWGG 1 cut(s) 667
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 6 cut(s) 278, 319, 593, 605, 629, 711
AluI AGCT 6 cut(s) 278, 319, 593, 605, 629, 711
Alw21I GWGCWC 2 cut(s) 462, 507
Alw26I GTCTC 2 cut(s) 197, 748
Alw44I GTGCAC 2 cut(s) 458, 503
AlwI GGATC 2 cut(s) 509, 679
AlwNI CAGNNNCTG 4 cut(s) 455, 614, 674, 746
AoxI GGCC 4 cut(s) 150, 154, 394, 756
ApaLI GTGCAC 2 cut(s) 458, 503
ApeKI GCWGC 4 cut(s) 47, 495, 498, 629
Asp700I GAANNNNTTC 1 cut(s) 688
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 155, 395
AsuC2I CCSGG 1 cut(s) 681
AxyI CCTNAGG 2 cut(s) 469, 555
BaeGI GKGCMC 2 cut(s) 462, 507
Bbv12I GWGCWC 2 cut(s) 462, 507
BbvI GCAGC 4 cut(s) 59, 507, 510, 616
BccI CCATC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 669
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 197, 748
BfaI CTAG 1 cut(s) 365
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 5 cut(s) 48, 350, 496, 499, 630
BlsI GCNGC 5 cut(s) 49, 351, 497, 500, 631
Bme1390I CCNGG 2 cut(s) 669, 681
BmgT120I GGNCC 2 cut(s) 155, 395
BmrFI CCNGG 2 cut(s) 669, 681
BmsI GCATC 2 cut(s) 433, 625
BpmI CTGGAG 4 cut(s) 81, 579, 591, 651
BpuEI CTTGAG 2 cut(s) 221, 305
BpuMI CCSGG 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 197
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 2 cut(s) 152, 413
Bse1I ACTGG 1 cut(s) 608
Bse21I CCTNAGG 2 cut(s) 469, 555
BseBI CCWGG 1 cut(s) 669
BseGI GGATG 3 cut(s) 330, 479, 640
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 5 cut(s) 26, 222, 397, 483, 546
BseNI ACTGG 1 cut(s) 608
BseSI GKGCMC 2 cut(s) 462, 507
BseXI GCAGC 4 cut(s) 59, 507, 510, 616
BseYI CCCAGC 3 cut(s) 109, 589, 711
BsgI GTGCAG 2 cut(s) 606, 660
BshFI GGCC 4 cut(s) 152, 156, 396, 758
BsiHKAI GWGCWC 2 cut(s) 462, 507
BsiSI CCGG 3 cut(s) 153, 414, 680
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 197, 748
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 4 cut(s) 152, 156, 396, 758
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 462, 507
Bsp143I GATC 3 cut(s) 514, 671, 762
BspACI CCGC 6 cut(s) 105, 309, 350, 417, 632, 645
BspANI GGCC 4 cut(s) 152, 156, 396, 758
BspCNI CTCAG 5 cut(s) 27, 223, 396, 482, 547
BspPI GGATC 2 cut(s) 509, 679
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 152, 413
BsrI ACTGG 1 cut(s) 608
BssAI RCCGGY 2 cut(s) 152, 413
BssMI GATC 3 cut(s) 514, 671, 762
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 148, 266
BstAFI CTTAAG 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 53, 629
BstC8I GCNNGC 4 cut(s) 23, 154, 415, 503
BstDEI CTNAG 5 cut(s) 35, 231, 383, 469, 555
BstF5I GGATG 3 cut(s) 330, 479, 640
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 517, 674, 765
BstMAI GTCTC 2 cut(s) 197, 748
BstMBI GATC 3 cut(s) 514, 671, 762
BstMWI GCNNNNNNNGC 5 cut(s) 53, 275, 629, 635, 644
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 667, 679
BstSLI GKGCMC 2 cut(s) 462, 507
BstV1I GCAGC 4 cut(s) 59, 507, 510, 616
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
Bsu36I CCTNAGG 2 cut(s) 469, 555
BsuRI GGCC 4 cut(s) 152, 156, 396, 758
BtsCI GGATG 3 cut(s) 330, 479, 640
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 5 cut(s) 144, 271, 391, 438, 618
Cac8I GCNNGC 4 cut(s) 23, 154, 415, 503
CaiI CAGNNNCTG 4 cut(s) 455, 614, 674, 746
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 152, 413
Cfr13I GGNCC 2 cut(s) 155, 395
Csp6I GTAC 2 cut(s) 5, 570
CviAII CATG 2 cut(s) 22, 341
CviQI GTAC 2 cut(s) 5, 570
DdeI CTNAG 5 cut(s) 35, 231, 383, 469, 555
DpnI GATC 3 cut(s) 516, 673, 764
DpnII GATC 3 cut(s) 514, 671, 762
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 27, 432
Eco81I CCTNAGG 2 cut(s) 469, 555
EcoRII CCWGG 1 cut(s) 667
FaeI CATG 2 cut(s) 25, 344
FaiI YATR 5 cut(s) 23, 52, 54, 242, 342
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 21, 340
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 5 cut(s) 48, 350, 496, 499, 630
FokI GGATG 3 cut(s) 317, 486, 647
FseI GGCCGGCC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 48, 350, 496, 499, 630
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 114
GluI GCNGC 5 cut(s) 48, 350, 496, 499, 630
GsaI CCCAGC 3 cut(s) 113, 593, 715
GsuI CTGGAG 4 cut(s) 81, 579, 591, 651
HaeIII GGCC 4 cut(s) 152, 156, 396, 758
HapII CCGG 3 cut(s) 153, 414, 680
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 25, 344
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 1 cut(s) 389
HpaII CCGG 3 cut(s) 153, 414, 680
Hpy166II GTNNAC 5 cut(s) 127, 460, 505, 529, 538
Hpy188I TCNGA 3 cut(s) 36, 306, 481
Hpy188III TCNNGA 4 cut(s) 124, 256, 471, 614
Hpy8I GTNNAC 5 cut(s) 127, 460, 505, 529, 538
HpyAV CCTTC 5 cut(s) 178, 191, 217, 230, 280
HpyCH4III ACNGT 2 cut(s) 148, 266
HpyCH4V TGCA 6 cut(s) 21, 460, 505, 524, 623, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 275, 629, 635, 644
HpyF3I CTNAG 5 cut(s) 35, 231, 383, 469, 555
Hsp92II CATG 2 cut(s) 25, 344
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 2 cut(s) 152, 413
KroNI GCCGGC 2 cut(s) 154, 415
Kzo9I GATC 3 cut(s) 514, 671, 762
LmnI GCTCC 3 cut(s) 598, 610, 643
Lsp1109I GCAGC 4 cut(s) 59, 507, 510, 616
LweI GCATC 2 cut(s) 433, 625
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 422, 725
MalI GATC 3 cut(s) 516, 673, 764
MboI GATC 3 cut(s) 514, 671, 762
MboII GAAGA 4 cut(s) 33, 539, 556, 681
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 2 cut(s) 462, 507
MluCI AATT 1 cut(s) 399
MmeI TCCRAC 2 cut(s) 608, 665
MroNI GCCGGC 2 cut(s) 152, 413
MroXI GAANNNNTTC 1 cut(s) 688
MseI TTAA 2 cut(s) 174, 282
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 629, 647, 711
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 3 cut(s) 153, 414, 680
MspR9I CCNGG 2 cut(s) 669, 681
MvaI CCWGG 1 cut(s) 669
MwoI GCNNNNNNNGC 5 cut(s) 53, 275, 629, 635, 644
NaeI GCCGGC 2 cut(s) 154, 415
NciI CCSGG 1 cut(s) 681
NdeI CATATG 1 cut(s) 52
NdeII GATC 3 cut(s) 514, 671, 762
NgoMIV GCCGGC 2 cut(s) 152, 413
NlaIII CATG 2 cut(s) 25, 344
NmuCI GTSAC 1 cut(s) 725
NspI RCATGY 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 194
PaeI GCATGC 1 cut(s) 25
PdiI GCCGGC 2 cut(s) 154, 415
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 5 cut(s) 49, 351, 497, 500, 631
Psp6I CCWGG 1 cut(s) 667
PspFI CCCAGC 3 cut(s) 109, 589, 711
PspGI CCWGG 1 cut(s) 667
PspPI GGNCC 2 cut(s) 155, 395
PstNI CAGNNNCTG 4 cut(s) 455, 614, 674, 746
PsuI RGATCY 1 cut(s) 671
PvuII CAGCTG 2 cut(s) 629, 711
RigI GGCCGGCC 1 cut(s) 156
RsaI GTAC 2 cut(s) 6, 571
RsaNI GTAC 2 cut(s) 5, 570
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 174, 282
SatI GCNGC 5 cut(s) 48, 350, 496, 499, 630
Sau3AI GATC 3 cut(s) 514, 671, 762
Sau96I GGNCC 2 cut(s) 155, 395
ScrFI CCNGG 2 cut(s) 669, 681
SduI GDGCHC 2 cut(s) 462, 507
SfaNI GCATC 2 cut(s) 433, 625
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 200, 281, 320
SmoI CTYRAG 3 cut(s) 200, 281, 320
SphI GCATGC 1 cut(s) 25
Sse9I AATT 1 cut(s) 399
SsiI CCGC 6 cut(s) 105, 309, 350, 417, 632, 645
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 667, 679
TaaI ACNGT 2 cut(s) 148, 266
TasI AATT 1 cut(s) 399
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 174, 282
Tru9I TTAA 2 cut(s) 174, 282
TscAI CASTG 5 cut(s) 151, 271, 391, 445, 625
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 4 cut(s) 47, 495, 498, 629
Tsp45I GTSAC 1 cut(s) 725
TspGWI ACGGA 2 cut(s) 149, 666
TspRI CASTG 5 cut(s) 151, 271, 391, 445, 625
Vha464I CTTAAG 1 cut(s) 281
VneI GTGCAC 2 cut(s) 458, 503
XceI RCATGY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.