Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007968

Physical Location & Seq

Genomic Coordinates Reverse (-)

59003311 .. 59004122

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0458300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGAACATCATCGTCTTCATGTACGACAATATTGCATCAGACAGAGAAAATTCCAGGCCTGGTGTCATTATCGATCAACAATCGAAATGGTATTGATGTTTACAATGGGTTCCCAAAGGATTATGCATTAGGTGATGTTAATACAGTCAATCTTTTCGCTGTTATTCTCAGAAACAAAAGTGCCCTCATTGGAGAAAGTGGCAAAGTTCTCGACAGTGGGATGCTTGATAGTCATTCTATTTGTGCCAAAGATCTCAGACATGTGCTGAAGAAGAAGCATCATGCTAAAGGGTACAAAGGGATGGTATTCTACCTTGAAGCTGCATTTGGAGGGAGTCTATTTGAGGGTCTCCTGCCAGATAGAATGAGTATCTATGCTACTACAGTATCACGAGAAAGTTTTGCAGCATGTCAACATGATCCTGCTGTTCCTGCAGAATATACATGCACTATAAGAAAAAGTGAATCACACGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

8.34

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	26 - 77	6.9e-08	Peptidase C13 family
Peptidase_C13	PF01650	79 - 138	1.3e-12	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04780 AT2G04780
fragaria_vesca	FvH4_6g41530 FvH4_6g41530 FvH4_6g41530
malus_domestica	MD09G1119100.v1.1 MD17G1110000.v1.1
prunus_persica	Prupe.3G205100_v2.0.a1 Prupe.3G205100_v2.0.a1 Prupe.3G205100_v2.0.a1
pyrus_communis	pycom09g04400 pycom17g10230
rosa_chinensis	RchiOBHm_Chr2g0157201
rosa_laevigata	RLG00000020971
rosa_multiflora	Rmu_sc0006282.1_g000008
rosa_roxburghii	Rroxscaffold_2G00092420
rosa_rugosa	Rorug02G0458200 Rorug02G0458300
rosa_samantha	Rh2AG523800 Rh2BG538200 Rh2CG508600 Rh2DG547100
rosa_wichuraiana	Rw2G043320 Rw2G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	25, 296
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	55, 60
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	323, 407
ApoI	RAATTY	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	187
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	310, 419
BccI	CCATC	1 cut(s)	298
BcgI	CGANNNNNNTGC	4 cut(s)	16, 50, 193, 227
BciT130I	CCWGG	2 cut(s)	57, 62
BcoDI	GTCTC	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	384, 435
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	2 cut(s)	324, 408
BlsI	GCNGC	2 cut(s)	325, 409
Bme1390I	CCNGG	2 cut(s)	57, 62
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	57, 62
BmsI	GCATC	3 cut(s)	46, 213, 289
BpiI	GAAGAC	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	57, 62
BseCI	ATCGAT	1 cut(s)	74
BseGI	GGATG	2 cut(s)	228, 309
BseMII	CTCAG	2 cut(s)	184, 271
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	310, 419
BshFI	GGCC	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	75, 253, 421
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	183, 270
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	356
BssMI	GATC	3 cut(s)	75, 253, 421
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	57, 62
Bst4CI	ACNGT	3 cut(s)	148, 218, 388
BstDEI	CTNAG	2 cut(s)	170, 257
BstF5I	GGATG	2 cut(s)	228, 309
BstKTI	GATC	3 cut(s)	78, 256, 424
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	3 cut(s)	75, 253, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	2 cut(s)	57, 62
BstNSI	RCATGY	3 cut(s)	266, 414, 450
BstSCI	CCNGG	2 cut(s)	55, 60
BstSFI	CTRYAG	2 cut(s)	384, 435
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	310, 419
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	228, 309
BtsIMutI	CAGTG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	24, 295
CviAII	CATG	6 cut(s)	21, 263, 284, 411, 419, 447
CviJI	RGCY	2 cut(s)	60, 323
CviKI_1	RGCY	2 cut(s)	60, 323
CviQI	GTAC	2 cut(s)	24, 295
DdeI	CTNAG	2 cut(s)	170, 257
DpnI	GATC	3 cut(s)	77, 255, 423
DpnII	GATC	3 cut(s)	75, 253, 421
Eco147I	AGGCCT	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	55, 60
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	6 cut(s)	24, 266, 287, 414, 422, 450
FatI	CATG	6 cut(s)	20, 262, 283, 410, 418, 446
Fnu4HI	GCNGC	2 cut(s)	324, 408
FokI	GGATG	2 cut(s)	235, 316
Fsp4HI	GCNGC	2 cut(s)	324, 408
GluI	GCNGC	2 cut(s)	324, 408
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	24, 266, 287, 414, 422, 450
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	2 cut(s)	337, 467
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	103, 416
Hpy188I	TCNGA	3 cut(s)	42, 173, 260
Hpy188III	TCNNGA	2 cut(s)	212, 393
Hpy8I	GTNNAC	2 cut(s)	103, 416
HpyCH4III	ACNGT	3 cut(s)	148, 218, 388
HpyCH4V	TGCA	6 cut(s)	37, 128, 326, 407, 437, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	170, 257
Hsp92II	CATG	6 cut(s)	24, 266, 287, 414, 422, 450
Kzo9I	GATC	3 cut(s)	75, 253, 421
LpnPI	CCDG	8 cut(s)	42, 47, 69, 74, 368, 372, 438, 447
Lsp1109I	GCAGC	2 cut(s)	310, 419
LweI	GCATC	3 cut(s)	46, 213, 289
MalI	GATC	3 cut(s)	77, 255, 423
MboI	GATC	3 cut(s)	75, 253, 421
MboII	GAAGA	3 cut(s)	9, 283, 286
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	197, 326, 340
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	57, 62
MvaI	CCWGG	2 cut(s)	57, 62
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	3 cut(s)	75, 253, 421
NlaIII	CATG	6 cut(s)	24, 266, 287, 414, 422, 450
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	3 cut(s)	266, 414, 450
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	325, 409
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	55, 60
PspGI	CCWGG	2 cut(s)	55, 60
PspN4I	GGNNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	25, 296
RsaNI	GTAC	2 cut(s)	24, 295
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	324, 408
Sau3AI	GATC	3 cut(s)	75, 253, 421
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	57, 62
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	3 cut(s)	136, 318, 325
SfaNI	GCATC	3 cut(s)	46, 213, 289
SfcI	CTRYAG	2 cut(s)	384, 435
Sse9I	AATT	1 cut(s)	51
SseBI	AGGCCT	1 cut(s)	60
SspI	AATATT	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	55, 60
TaaI	ACNGT	3 cut(s)	148, 218, 388
TaqI	TCGA	3 cut(s)	74, 85, 213
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	323, 407
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	3 cut(s)	266, 414, 450
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.