FvH4_6g41530

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007968
Physical Location & Seq
Forward (+)
32625245 .. 32627384
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41530.t2

Sequence Viewer

Length: 756 bp
ATGGAACTTCCTGTGGTTTTCATGGCTCTACTAGTTATGTGTTCATCAGAAGCATATGCTCAAAGTGCCCCATCTCCCTCCTCTCTCACCCCTACTCCTGCCCCGGCACCAGCTCCAGAATTCGTGAATCTCACAGATTTGCTCTCTGTGGCTGGCCCTTTCCACACCTTCCTTGGCTACCTTGAGTCCACCAAAGTGATTGAGACATTTCAAGACCAAGCCAACACGACTGAGGAAGGCATTACCATCTTTGTCCCCAGAGATAGTGCTTTCAAAGCTCTTAAAAACCCTTCTCTGTCCAATCTCACTGCTGACCAGCTCAAATCAATGTTTCTATTCCATGCTCTGCCACATTACTACTCTTTGGCCGATTTCAAAAACCTCAGCGACATGAGCCCCGTGGCTACAATGGCCGGTGGACAATTCACTTTGAACTTCACTGATGTTTCAGGCACTGCACATCTTACCTCGGGATGGTCAGACACAAAAGTGAGCAGCAGTGTGCATTCCACAGACCCTGTAGCTGTTTACCAAGTTGACAAGGTTCTTCTTCCAGAGGCAATCTTTGGCACTGACATTCCCCCAACCGCTGCCCCAGCACCATCTCCGGACATTGCTCCAGCTGCAGACGCTCCAAAAGCTGCAGACAGTGACTCGTCTCCAGGATCTTCACCAGATAAATCTTCTTCTTACAGAATTATGAGTTGGGGTCAATTGGTTTTGGCAATCTCAGGTGGACTGGTCCTGTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

252

Amino Acids

26.46

Weight (kDa)

4.49

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 53 - 185 6.5e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 1 cut(s) 588
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 2 cut(s) 366, 411
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 4 cut(s) 212, 274, 376, 433
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AleI CACNNNNGTG 2 cut(s) 194, 488
AluBI AGCT 6 cut(s) 113, 278, 319, 524, 623, 641
AluI AGCT 6 cut(s) 113, 278, 319, 524, 623, 641
Alw26I GTCTC 2 cut(s) 197, 663
AlwI GGATC 1 cut(s) 673
AlwNI CAGNNNCTG 2 cut(s) 455, 518
Ama87I CYCGRG 1 cut(s) 469
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 3 cut(s) 154, 366, 411
ApeKI GCWGC 4 cut(s) 495, 590, 623, 641
ApoI RAATTY 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 155, 742
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 79, 663
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 4 cut(s) 507, 577, 610, 628
BccI CCATC 4 cut(s) 79, 254, 468, 610
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 197, 663
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 3 cut(s) 519, 624, 642
BisI GCNGC 4 cut(s) 496, 591, 624, 642
BlsI GCNGC 4 cut(s) 497, 592, 625, 643
Bme1390I CCNGG 2 cut(s) 104, 663
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 155, 742
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 104, 663
BpmI CTGGAG 3 cut(s) 99, 603, 645
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 4 cut(s) 102, 172, 399, 468
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 612
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 4 cut(s) 102, 172, 399, 468
BseGI GGATG 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 222, 397, 744
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 4 cut(s) 507, 577, 610, 628
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 156, 368, 413
BshNI GGYRCC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 3 cut(s) 104, 414, 608
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 197, 663
BsmBI CGTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 156, 368, 413
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 70, 398
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 1 cut(s) 665
BspACI CCGC 1 cut(s) 588
BspANI GGCC 3 cut(s) 156, 368, 413
BspCNI CTCAG 3 cut(s) 223, 396, 743
BspEI TCCGGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 2 cut(s) 628, 646
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 4 cut(s) 102, 172, 399, 468
BssMI GATC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 231, 383, 730
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 1 cut(s) 668
BstMAI GTCTC 2 cut(s) 197, 663
BstMBI GATC 1 cut(s) 665
BstMWI GCNNNNNNNGC 8 cut(s) 65, 275, 393, 410, 596, 623, 629, 638
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 102, 661
BstSFI CTRYAG 3 cut(s) 519, 624, 642
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 4 cut(s) 507, 577, 610, 628
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 3 cut(s) 156, 368, 413
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 479
BtsI GCAGTG 3 cut(s) 306, 453, 505
BtsIMutI CAGTG 6 cut(s) 306, 438, 453, 505, 570, 655
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 2 cut(s) 455, 518
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 155, 742
CseI GACGC 1 cut(s) 638
CviAII CATG 3 cut(s) 22, 341, 391
DdeI CTNAG 3 cut(s) 231, 383, 730
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 366, 411
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 663
FaeI CATG 3 cut(s) 25, 344, 394
FaiI YATR 7 cut(s) 23, 38, 55, 57, 342, 392, 701
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 21, 340, 390
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 496, 591, 624, 642
FokI GGATG 1 cut(s) 486
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 4 cut(s) 496, 591, 624, 642
FspBI CTAG 1 cut(s) 32
GluI GCNGC 4 cut(s) 496, 591, 624, 642
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 3 cut(s) 99, 603, 645
HaeIII GGCC 3 cut(s) 156, 368, 413
HapII CCGG 3 cut(s) 104, 414, 608
HgaI GACGC 1 cut(s) 638
Hin1II CATG 3 cut(s) 25, 344, 394
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 3 cut(s) 127, 185, 653
HpaII CCGG 3 cut(s) 104, 414, 608
HphI GGTGA 2 cut(s) 79, 663
Hpy166II GTNNAC 5 cut(s) 189, 419, 529, 538, 737
Hpy188I TCNGA 2 cut(s) 49, 481
Hpy188III TCNNGA 6 cut(s) 116, 124, 212, 471, 554, 608
Hpy8I GTNNAC 5 cut(s) 189, 419, 529, 538, 737
HpyAV CCTTC 3 cut(s) 178, 230, 300
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4V TGCA 4 cut(s) 458, 505, 626, 644
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 275, 393, 410, 596, 623, 629, 638
HpyF3I CTNAG 3 cut(s) 231, 383, 730
Hsp92II CATG 3 cut(s) 25, 344, 394
Kpn2I TCCGGA 1 cut(s) 607
Kzo9I GATC 1 cut(s) 665
LmnI GCTCC 3 cut(s) 118, 622, 637
Lsp1109I GCAGC 4 cut(s) 507, 577, 610, 628
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 650
MalI GATC 1 cut(s) 667
MboI GATC 1 cut(s) 665
MboII GAAGA 5 cut(s) 539, 542, 660, 675, 678
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 2 cut(s) 70, 398
MluCI AATT 4 cut(s) 119, 422, 696, 713
MlyI GAGTC 2 cut(s) 194, 647
MnlI CCTC 6 cut(s) 88, 91, 226, 392, 478, 550
MroI TCCGGA 1 cut(s) 607
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 194, 488
MspA1I CMGCKG 2 cut(s) 590, 623
MspI CCGG 3 cut(s) 104, 414, 608
MspR9I CCNGG 2 cut(s) 104, 663
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 8 cut(s) 65, 275, 393, 410, 596, 623, 629, 638
NciI CCSGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 55
NdeII GATC 1 cut(s) 665
NlaIII CATG 3 cut(s) 25, 344, 394
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 650
OliI CACNNNNGTG 2 cut(s) 194, 488
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 4 cut(s) 497, 592, 625, 643
PleI GAGTC 2 cut(s) 193, 647
PpsI GAGTC 2 cut(s) 193, 647
Psp6I CCWGG 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 2 cut(s) 155, 742
PstI CTGCAG 2 cut(s) 628, 646
PstNI CAGNNNCTG 2 cut(s) 455, 518
PsuI RGATCY 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 623
RseI CAYNNNNRTG 2 cut(s) 194, 488
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 4 cut(s) 496, 591, 624, 642
Sau3AI GATC 1 cut(s) 665
Sau96I GGNCC 2 cut(s) 155, 742
SchI GAGTC 2 cut(s) 194, 647
ScrFI CCNGG 2 cut(s) 104, 663
SduI GDGCHC 2 cut(s) 70, 398
SfcI CTRYAG 3 cut(s) 519, 624, 642
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 194, 488
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 4 cut(s) 119, 422, 696, 713
SsiI CCGC 1 cut(s) 588
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 102, 661
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 650
TasI AATT 4 cut(s) 119, 422, 696, 713
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 6 cut(s) 313, 445, 460, 505, 577, 655
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 4 cut(s) 495, 590, 623, 641
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 2 cut(s) 10, 33
TspRI CASTG 6 cut(s) 313, 445, 460, 505, 577, 655
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.