Rw2G043320

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007968
Physical Location & Seq
Forward (+)
69711018 .. 69711773
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043320.1

Sequence Viewer

Length: 756 bp
ATGGAACTTCCTGTGGTTTTCATGGCTGTACTGGTTCTGTGTTCATCAGCAGCATATGCTCAAACTGCCCCATCTCCCTCGCTAACCCCTACTCCAGCGCCAGCCCCAGCCCCCGAATTCGTGAACCTCACAGATTTGTTCTCTGTGGCTGGCCCATTCCACACCTTCCTTGGCTACCTTGAGTCAACCAAAGTGATTGAGACATTCCAAGACCAAGCCAACAAGACTGAGGAAGGCATAACCATCTTTGTCCCCAAAGATAGTGCTTTTGCATCTCTTAAAAAACCTTCTCTGTCCAATCTCACCGCTGACCAGCTCAAATCTCTGTTTCTATTCCATGCTTTGTCACATTACTACTCTTTGGCCGATTTCAGAAACCTCAGCAATATGAGCCCCGTGGCTACAATGGCCGGGGGACAATACAGTTTGAACTTCACTGATGTTTCAGGCACTGCACATCTTACCTCGGGATGGTCAGTCACAAAAGTGAGCAGCAGTGTGCATTCCACAGACCCTGTTGCTGTTTACCAAGTTGACAAGGTTCTTCTTCCGGAGGCAATCTTCGGTACTGACATTCCCCCAACCGCAGCCCCAGCACCAGCTCCGGAAATTGCTCCAGCTGCAGATGCTCCAAAAGCCGCAGACAGTGATGACTTGTCTCCAGGATCCTCACCAGATAAATCTTCTTCTTACAGAATTATGAGTTGGGGTCGATTGATTTTGGCAATCTCAGGTGGACTGGTCCTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

251

Amino Acids

26.47

Weight (kDa)

4.84

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 52 - 184 1.2e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 550, 604
AciI CCGC 3 cut(s) 306, 585, 639
AclWI GGATC 2 cut(s) 660, 673
AcoI YGGCCR 2 cut(s) 363, 408
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 2 cut(s) 30, 568
AfiI CCNNNNNNNGG 1 cut(s) 471
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 3 cut(s) 316, 602, 620
AluI AGCT 3 cut(s) 316, 602, 620
Alw26I GTCTC 2 cut(s) 194, 663
AlwI GGATC 2 cut(s) 660, 673
AlwNI CAGNNNCTG 2 cut(s) 452, 515
Ama87I CYCGRG 1 cut(s) 466
Aor13HI TCCGGA 2 cut(s) 550, 604
AoxI GGCC 3 cut(s) 151, 363, 408
ApeKI GCWGC 4 cut(s) 50, 492, 587, 620
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 152, 742
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 295, 663
AvaI CYCGRG 1 cut(s) 466
AvaII GGWCC 1 cut(s) 742
BamHI GGATCC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 395
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 4 cut(s) 62, 504, 599, 607
BccI CCATC 3 cut(s) 79, 251, 465
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 194, 663
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 5 cut(s) 51, 493, 588, 621, 639
BlsI GCNGC 5 cut(s) 52, 494, 589, 622, 640
Bme1390I CCNGG 2 cut(s) 412, 663
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 466
BmgT120I GGNCC 2 cut(s) 152, 742
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 2 cut(s) 412, 663
BmsI GCATC 2 cut(s) 281, 616
BpmI CTGGAG 3 cut(s) 78, 600, 645
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 412
BsaJI CCNNGG 4 cut(s) 169, 396, 411, 465
BsaWI WCCGGW 2 cut(s) 550, 604
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse1I ACTGG 2 cut(s) 36, 744
BseAI TCCGGA 2 cut(s) 550, 604
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 4 cut(s) 169, 396, 411, 465
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 219, 394, 744
BseNI ACTGG 2 cut(s) 36, 744
BseXI GCAGC 4 cut(s) 62, 504, 599, 607
BseYI CCCAGC 2 cut(s) 106, 592
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 3 cut(s) 153, 365, 410
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 3 cut(s) 411, 551, 605
BslFI GGGAC 2 cut(s) 236, 429
BslI CCNNNNNNNGG 1 cut(s) 471
BsmAI GTCTC 2 cut(s) 194, 663
BsmFI GGGAC 2 cut(s) 236, 429
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 3 cut(s) 153, 365, 410
BsoBI CYCGRG 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 395
Bsp13I TCCGGA 2 cut(s) 550, 604
Bsp143I GATC 1 cut(s) 665
BspACI CCGC 3 cut(s) 306, 585, 639
BspANI GGCC 3 cut(s) 153, 365, 410
BspCNI CTCAG 3 cut(s) 220, 393, 743
BspEI TCCGGA 2 cut(s) 550, 604
BspLI GGNNCC 1 cut(s) 667
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 660, 673
BsrI ACTGG 2 cut(s) 36, 744
BssECI CCNNGG 4 cut(s) 169, 396, 411, 465
BssMI GATC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 2 cut(s) 425, 647
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 102, 151
BstDEI CTNAG 3 cut(s) 228, 380, 730
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 476
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 668
BstMAI GTCTC 2 cut(s) 194, 663
BstMBI GATC 1 cut(s) 665
BstMWI GCNNNNNNNGC 8 cut(s) 56, 65, 390, 407, 593, 620, 626, 635
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 410, 661
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 4 cut(s) 62, 504, 599, 607
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 3 cut(s) 153, 365, 410
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 476
BtsI GCAGTG 2 cut(s) 450, 502
BtsIMutI CAGTG 4 cut(s) 435, 450, 502, 652
Cac8I GCNNGC 2 cut(s) 102, 151
CaiI CAGNNNCTG 2 cut(s) 452, 515
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 152, 742
Csp6I GTAC 2 cut(s) 29, 567
CviAII CATG 2 cut(s) 22, 338
CviQI GTAC 2 cut(s) 29, 567
DdeI CTNAG 3 cut(s) 228, 380, 730
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 363, 408
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 25, 341
FaiI YATR 7 cut(s) 23, 55, 57, 239, 339, 389, 701
FaqI GGGAC 2 cut(s) 236, 429
FatI CATG 2 cut(s) 21, 337
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 5 cut(s) 51, 493, 588, 621, 639
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 5 cut(s) 51, 493, 588, 621, 639
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 51, 493, 588, 621, 639
GsaI CCCAGC 2 cut(s) 110, 596
GsuI CTGGAG 3 cut(s) 78, 600, 645
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 153, 365, 410
HapII CCGG 3 cut(s) 411, 551, 605
HhaI GCGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 25, 341
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 2 cut(s) 186, 535
HindII GTYRAC 2 cut(s) 186, 535
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 411, 551, 605
HphI GGTGA 2 cut(s) 295, 663
Hpy166II GTNNAC 5 cut(s) 124, 186, 526, 535, 737
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 4 cut(s) 121, 468, 551, 605
Hpy8I GTNNAC 5 cut(s) 124, 186, 526, 535, 737
HpyAV CCTTC 3 cut(s) 175, 227, 297
HpyCH4III ACNGT 2 cut(s) 425, 647
HpyCH4V TGCA 4 cut(s) 272, 455, 502, 623
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 65, 390, 407, 593, 620, 626, 635
HpyF3I CTNAG 3 cut(s) 228, 380, 730
Hsp92II CATG 2 cut(s) 25, 341
HspAI GCGC 1 cut(s) 98
Kpn2I TCCGGA 2 cut(s) 550, 604
Kzo9I GATC 1 cut(s) 665
LmnI GCTCC 3 cut(s) 607, 619, 634
Lsp1109I GCAGC 4 cut(s) 62, 504, 599, 607
LweI GCATC 2 cut(s) 281, 616
MaeIII GTNAC 2 cut(s) 345, 478
MalI GATC 1 cut(s) 667
MboI GATC 1 cut(s) 665
MboII GAAGA 5 cut(s) 536, 539, 553, 675, 678
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 3 cut(s) 116, 609, 696
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 7 cut(s) 88, 137, 223, 389, 475, 547, 679
MroI TCCGGA 2 cut(s) 550, 604
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 308, 620
MspI CCGG 3 cut(s) 411, 551, 605
MspR9I CCNGG 2 cut(s) 412, 663
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 8 cut(s) 56, 65, 390, 407, 593, 620, 626, 635
NciI CCSGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 55
NdeII GATC 1 cut(s) 665
NlaIII CATG 2 cut(s) 25, 341
NlaIV GGNNCC 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 345, 478
OliI CACNNNNGTG 1 cut(s) 485
PctI GAATGC 1 cut(s) 502
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 5 cut(s) 52, 494, 589, 622, 640
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 661
PspFI CCCAGC 2 cut(s) 106, 592
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 667
PspPI GGNCC 2 cut(s) 152, 742
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 452, 515
PsuI RGATCY 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 2 cut(s) 30, 568
RsaNI GTAC 2 cut(s) 29, 567
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 5 cut(s) 51, 493, 588, 621, 639
Sau3AI GATC 1 cut(s) 665
Sau96I GGNCC 2 cut(s) 152, 742
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 412, 663
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 2 cut(s) 281, 616
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 116, 609, 696
SsiI CCGC 3 cut(s) 306, 585, 639
StyD4I CCNGG 2 cut(s) 410, 661
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 425, 647
TaqI TCGA 1 cut(s) 712
TasI AATT 3 cut(s) 116, 609, 696
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 641
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 4 cut(s) 442, 457, 502, 652
TseFI GTSAC 2 cut(s) 345, 478
TseI GCWGC 4 cut(s) 50, 492, 587, 620
Tsp45I GTSAC 2 cut(s) 345, 478
TspDTI ATGAA 2 cut(s) 10, 33
TspRI CASTG 4 cut(s) 442, 457, 502, 652
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.