MD17G1110000.v1.1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0007968
Physical Location & Seq
Reverse (-)
9480182 .. 9482288
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1110000.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGAACTTCCTGTGGTTTGCATGCTACTGCTTCTGTGTTCTTCAGCAGCATATGCTCAAAAAGCCAAACCTCCCTCTCCCTCTTTCAGCCCTACTCCAGCCCCAGCCCCAGCGCCAGATTTTGTGAACCTCACGGCTTTACTCACCGTGGCCGGCCCCTTCCACACCTTCCTTGGCTACCTTCAGTCCAACAAAGTGCTTGAGACCTTCCAAGACCAAGCCAACAAAACCGAGGAAGGCATCACTATCTTTGTCCCAAGTGACAGTGCCTTCACAGCTCTTAAGAAGCCCTCTTTGTCCAATCTCACCGCTGACCAGCTCAAGTCCGTCATGTTATTCCATGCCTTGCCGCATTACTACACTCTAGCTGACTTCAAAAACCTCAGCGAATCAAGCCCGATTCCTACATTTGCCGGCGGAGATTACACTTTGAACTTCACTGATGCTTCAGGCTCTGCGCACCTTACCTCAGGATGGTCAAACACAAAAGTGAGCAGCAGCGTGTACTCGACAGATCCTGTTGCAGTTTACCAAGTTGACAAGGTTCTTCTACCCGAGGCAATCTTTGGTACTGACATTCCTCCAACCCCAGCTCCAGCACCAGCTCCTGACATTGCACCAGCTGCAGATGCTCCAACCGCTGACGGAGGCTCATCTCGAGCATCTTCACCGGGAAAATCTTCGTCTTACAGGATTATCAGCTGGGGCATTTGGGGTCACTTGCTTTTGGCAGTCTCAGGTGGCCTGGCCTTGATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

254

Amino Acids

26.5

Weight (kDa)

5.21

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 53 - 185 2.5e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
AciI CCGC 4 cut(s) 309, 350, 417, 639
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 3 cut(s) 27, 167, 432
AfaI GTAC 2 cut(s) 506, 571
AfiI CCNNNNNNNGG 1 cut(s) 474
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 376, 433
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 7 cut(s) 278, 319, 368, 593, 605, 623, 702
AluI AGCT 7 cut(s) 278, 319, 368, 593, 605, 623, 702
Alw26I GTCTC 2 cut(s) 197, 739
AlwI GGATC 1 cut(s) 509
AlwNI CAGNNNCTG 3 cut(s) 455, 518, 608
Ama87I CYCGRG 2 cut(s) 554, 657
AoxI GGCC 4 cut(s) 150, 154, 742, 747
ApeKI GCWGC 4 cut(s) 47, 495, 498, 623
Asp700I GAANNNNTTC 1 cut(s) 679
AspLEI GCGC 2 cut(s) 115, 460
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 3 cut(s) 136, 298, 660
AvaI CYCGRG 2 cut(s) 554, 657
AxyI CCTNAGG 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 4 cut(s) 59, 507, 510, 610
BccI CCATC 1 cut(s) 468
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 746
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 197, 739
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 5 cut(s) 48, 350, 496, 499, 624
BlsI GCNGC 5 cut(s) 49, 351, 497, 500, 625
Bme1390I CCNGG 2 cut(s) 672, 746
BmeT110I CYCGRG 2 cut(s) 554, 657
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 672, 746
BmsI GCATC 4 cut(s) 249, 433, 619, 671
BpmI CTGGAG 2 cut(s) 81, 579
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 2 cut(s) 221, 305
BpuMI CCSGG 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 147, 172, 231, 555
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 2 cut(s) 152, 413
Bse21I CCTNAGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 4 cut(s) 147, 172, 231, 555
BseGI GGATG 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 397, 483, 750
BseXI GCAGC 4 cut(s) 59, 507, 510, 610
BseYI CCCAGC 4 cut(s) 103, 109, 589, 702
BshFI GGCC 4 cut(s) 152, 156, 744, 749
BsiHKCI CYCGRG 2 cut(s) 554, 657
BsiSI CCGG 3 cut(s) 153, 414, 671
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 197, 739
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 4 cut(s) 152, 156, 744, 749
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 2 cut(s) 554, 657
Bsp143I GATC 2 cut(s) 514, 753
BspACI CCGC 4 cut(s) 309, 350, 417, 639
BspANI GGCC 4 cut(s) 152, 156, 744, 749
BspCNI CTCAG 3 cut(s) 396, 482, 749
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 1 cut(s) 509
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 152, 413
BssAI RCCGGY 2 cut(s) 152, 413
BssECI CCNNGG 4 cut(s) 147, 172, 231, 555
BssMI GATC 2 cut(s) 514, 753
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 2 cut(s) 148, 266
BstAFI CTTAAG 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 53, 623
BstC8I GCNNGC 3 cut(s) 23, 154, 415
BstDEI CTNAG 3 cut(s) 383, 469, 736
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 460
BstKTI GATC 2 cut(s) 517, 756
BstMAI GTCTC 2 cut(s) 197, 739
BstMBI GATC 2 cut(s) 514, 753
BstMWI GCNNNNNNNGC 7 cut(s) 53, 62, 275, 393, 623, 629, 638
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 670, 744
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 4 cut(s) 59, 507, 510, 610
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
Bsu36I CCTNAGG 1 cut(s) 469
BsuRI GGCC 4 cut(s) 152, 156, 744, 749
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 271, 438
Cac8I GCNNGC 3 cut(s) 23, 154, 415
CaiI CAGNNNCTG 3 cut(s) 455, 518, 608
CfoI GCGC 2 cut(s) 115, 460
Cfr10I RCCGGY 2 cut(s) 152, 413
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 505, 570
CviAII CATG 3 cut(s) 22, 331, 341
CviQI GTAC 2 cut(s) 505, 570
DdeI CTNAG 3 cut(s) 383, 469, 736
DpnI GATC 2 cut(s) 516, 755
DpnII GATC 2 cut(s) 514, 753
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 3 cut(s) 27, 167, 432
Eco81I CCTNAGG 1 cut(s) 469
Eco88I CYCGRG 2 cut(s) 554, 657
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 25, 334, 344
FaiI YATR 5 cut(s) 23, 52, 54, 332, 342
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 21, 330, 340
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 5 cut(s) 48, 350, 496, 499, 624
FokI GGATG 1 cut(s) 486
FseI GGCCGGCC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 48, 350, 496, 499, 624
FspBI CTAG 1 cut(s) 365
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 2 cut(s) 114, 459
GluI GCNGC 5 cut(s) 48, 350, 496, 499, 624
GsaI CCCAGC 4 cut(s) 107, 113, 593, 706
GsuI CTGGAG 2 cut(s) 81, 579
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 4 cut(s) 152, 156, 744, 749
HapII CCGG 3 cut(s) 153, 414, 671
HhaI GCGC 2 cut(s) 115, 460
Hin1II CATG 3 cut(s) 25, 334, 344
Hin6I GCGC 2 cut(s) 113, 458
HinP1I GCGC 2 cut(s) 113, 458
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 2 cut(s) 389, 400
HpaII CCGG 3 cut(s) 153, 414, 671
HphI GGTGA 3 cut(s) 136, 298, 660
Hpy166II GTNNAC 4 cut(s) 127, 505, 529, 538
Hpy188III TCNNGA 3 cut(s) 471, 608, 657
Hpy8I GTNNAC 4 cut(s) 127, 505, 529, 538
HpyAV CCTTC 6 cut(s) 169, 178, 191, 217, 230, 280
HpyCH4III ACNGT 2 cut(s) 148, 266
HpyCH4V TGCA 4 cut(s) 21, 524, 617, 626
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 62, 275, 393, 623, 629, 638
HpyF3I CTNAG 3 cut(s) 383, 469, 736
Hsp92II CATG 3 cut(s) 25, 334, 344
HspAI GCGC 2 cut(s) 113, 458
KroI GCCGGC 2 cut(s) 152, 413
KroNI GCCGGC 2 cut(s) 154, 415
Kzo9I GATC 2 cut(s) 514, 753
LmnI GCTCC 3 cut(s) 598, 610, 637
Lsp1109I GCAGC 4 cut(s) 59, 507, 510, 610
LweI GCATC 4 cut(s) 249, 433, 619, 671
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 260, 716
MalI GATC 2 cut(s) 516, 755
MboI GATC 2 cut(s) 514, 753
MboII GAAGA 4 cut(s) 33, 539, 657, 672
MflI RGATCY 1 cut(s) 514
MmeI TCCRAC 3 cut(s) 213, 608, 659
MroNI GCCGGC 2 cut(s) 152, 413
MroXI GAANNNNTTC 1 cut(s) 679
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 4 cut(s) 311, 623, 641, 702
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 3 cut(s) 153, 414, 671
MspR9I CCNGG 2 cut(s) 672, 746
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 7 cut(s) 53, 62, 275, 393, 623, 629, 638
NaeI GCCGGC 2 cut(s) 154, 415
NciI CCSGG 1 cut(s) 672
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 514, 753
NgoMIV GCCGGC 2 cut(s) 152, 413
NlaIII CATG 3 cut(s) 25, 334, 344
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 260, 716
NsbI TGCGCA 1 cut(s) 459
NspI RCATGY 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 488
PaeI GCATGC 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 657
PdiI GCCGGC 2 cut(s) 154, 415
PdmI GAANNNNTTC 1 cut(s) 679
PfeI GAWTC 2 cut(s) 389, 400
PkrI GCNGC 5 cut(s) 49, 351, 497, 500, 625
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 4 cut(s) 103, 109, 589, 702
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 3 cut(s) 455, 518, 608
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 2 cut(s) 623, 702
RigI GGCCGGCC 1 cut(s) 156
RsaI GTAC 2 cut(s) 506, 571
RsaNI GTAC 2 cut(s) 505, 570
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 48, 350, 496, 499, 624
Sau3AI GATC 2 cut(s) 514, 753
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 672, 746
SfaNI GCATC 4 cut(s) 249, 433, 619, 671
SfcI CTRYAG 1 cut(s) 624
Sfr274I CTCGAG 1 cut(s) 657
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 4 cut(s) 200, 281, 320, 657
SmoI CTYRAG 4 cut(s) 200, 281, 320, 657
SphI GCATGC 1 cut(s) 25
SsiI CCGC 4 cut(s) 309, 350, 417, 639
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 670, 744
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 148, 266
TaqI TCGA 2 cut(s) 509, 658
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 2 cut(s) 389, 400
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 271, 445
TseFI GTSAC 2 cut(s) 260, 716
TseI GCWGC 4 cut(s) 47, 495, 498, 623
Tsp45I GTSAC 2 cut(s) 260, 716
TspGWI ACGGA 2 cut(s) 316, 660
TspRI CASTG 2 cut(s) 271, 445
Vha464I CTTAAG 1 cut(s) 281
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 679
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.