Prupe.3G205100_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007968
Physical Location & Seq
Forward (+)
21287808 .. 21290065
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G205100.1

Sequence Viewer

Length: 822 bp
ATGGGAATTTGGAGAGTCTGTCACCATACAAAAAGTACTATTAAGTTTTTGGACAAAATGGAACTTCCTGTGGTTTTCATGCTACTGCTTCTGTGTTCTTCAGCAGCTTATGCTCAAACTTCTAAATCTCCCATCTTAAGCCCTACTCCAGCCCCAGCACCTGCACCGGAACACGTGAACCTCACAGATTTACTCACTGTGGCTGGCCCATTCCACACCTTCCTTAACTACCTTGAGTCTACCAAAGTGCTTGAGACCTTTCAAGACCAAGCCAACAAGACTGAGGAAGGCATAACTATCTTTGTACCAACAGATAGTGCCTTCTCATCTCTTAAGAAGCCTTCTCTTTCCAATCTCACAGCTGACCAGCTCAAGTCACTCATCCTATTCCATGCCTTGCCGCATTACTATTCTTTATCTGACTTCAAAAACCTCAGCCAATCAAGCCCCATACCTACATTTGCTGGTGGACAGTACACTTTGAACTTCACTGATGTTTCAGGCACCGTGCACCTTAGCTCAGGATGGACAGACACAAAAGTGAGCAGCAGTGTGCTTTCCACTGATCCGGTTGCAATTTACCAAGTTAACAAGGTTCTTCTTCCTGAGGCAATCTTTGGCACTGACATACCTCCAACCCCAGCTCCTGCACCGGCTCCCGAAACTGCACCAGCTGCAGATGCTCCAACAGCTGATGGAACTAATGGCTCATCATCTCCAGGATCTTCACCAGGAAAATCCTCTTCTTACAGGATTATCAGCTGGGGTATTTGGGGTCACTTTGTTTTGGCAGTCTCAGCTGGGTTGGTCTTGTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

274

Amino Acids

29.09

Weight (kDa)

5.85

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 239
AciI CCGC 1 cut(s) 401
AclWI GGATC 2 cut(s) 560, 730
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 175
AfaI GTAC 3 cut(s) 37, 306, 476
AflII CTTAAG 2 cut(s) 136, 332
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 3 cut(s) 263, 427, 484
AjnI CCWGG 2 cut(s) 718, 730
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 9 cut(s) 107, 362, 370, 519, 644, 674, 692, 762, 800
AluI AGCT 9 cut(s) 107, 362, 370, 519, 644, 674, 692, 762, 800
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 248, 799
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 2 cut(s) 560, 730
AlwNI CAGNNNCTG 2 cut(s) 161, 647
AoxI GGCC 1 cut(s) 205
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 104, 546, 674
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 14, 720
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 1 cut(s) 513
BanI GGYRCC 1 cut(s) 503
BbrPI CACGTG 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 513
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 116, 558, 661
BccI CCATC 3 cut(s) 140, 519, 689
BciT130I CCWGG 2 cut(s) 720, 732
BcoDI GTCTC 2 cut(s) 248, 799
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 2 cut(s) 136, 332
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 4 cut(s) 105, 401, 547, 675
BlsI GCNGC 4 cut(s) 106, 402, 548, 676
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 720, 732
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 505, 657
BmrFI CCNGG 2 cut(s) 720, 732
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 2 cut(s) 132, 702
Bpu10I CCTNAGC 3 cut(s) 434, 515, 520
BpuEI CTTGAG 3 cut(s) 254, 272, 356
BsaAI YACGTR 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 166, 568
BsaXI ACNNNNNCTCC 3 cut(s) 34, 628, 658
Bse118I RCCGGY 1 cut(s) 652
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 720, 732
BseGI GGATG 2 cut(s) 381, 530
BseMII CTCAG 5 cut(s) 273, 448, 534, 597, 810
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 3 cut(s) 116, 558, 661
BseYI CCCAGC 4 cut(s) 154, 640, 762, 800
BsgI GTGCAG 3 cut(s) 147, 633, 651
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 3 cut(s) 167, 569, 653
BsmAI GTCTC 2 cut(s) 248, 799
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 565, 722
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 5 cut(s) 274, 447, 533, 598, 809
BspLI GGNNCC 2 cut(s) 505, 657
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 2 cut(s) 560, 730
BspT107I GGYRCC 1 cut(s) 503
BspTI CTTAAG 2 cut(s) 136, 332
BspTNI GGTCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 652
BssAI RCCGGY 1 cut(s) 652
BssMI GATC 2 cut(s) 565, 722
Bst2UI CCWGG 2 cut(s) 720, 732
Bst4CI ACNGT 3 cut(s) 199, 474, 508
Bst6I CTCTTC 1 cut(s) 748
BstAFI CTTAAG 2 cut(s) 136, 332
BstAPI GCANNNNNTGC 2 cut(s) 110, 674
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 6 cut(s) 282, 434, 515, 520, 606, 796
BstF5I GGATG 2 cut(s) 381, 530
BstKTI GATC 2 cut(s) 568, 725
BstMAI GTCTC 2 cut(s) 248, 799
BstMBI GATC 2 cut(s) 565, 722
BstMWI GCNNNNNNNGC 6 cut(s) 110, 444, 674, 680, 689, 797
BstNI CCWGG 2 cut(s) 720, 732
BstSCI CCNGG 2 cut(s) 718, 730
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 3 cut(s) 116, 558, 661
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 381, 530
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 5 cut(s) 195, 489, 556, 561, 621
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 2 cut(s) 161, 647
Cfr10I RCCGGY 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 36, 305, 475
CviAII CATG 2 cut(s) 79, 392
CviQI GTAC 3 cut(s) 36, 305, 475
DdeI CTNAG 6 cut(s) 282, 434, 515, 520, 606, 796
DpnI GATC 2 cut(s) 567, 724
DpnII GATC 2 cut(s) 565, 722
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 718, 730
FaeI CATG 2 cut(s) 82, 395
FaiI YATR 7 cut(s) 27, 80, 111, 293, 393, 452, 629
FatI CATG 2 cut(s) 78, 391
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 4 cut(s) 105, 401, 547, 675
FokI GGATG 2 cut(s) 368, 537
Fsp4HI GCNGC 4 cut(s) 105, 401, 547, 675
GluI GCNGC 4 cut(s) 105, 401, 547, 675
GsaI CCCAGC 4 cut(s) 158, 644, 766, 804
GsuI CTGGAG 2 cut(s) 132, 702
HaeIII GGCC 1 cut(s) 207
HapII CCGG 3 cut(s) 167, 569, 653
Hin1II CATG 2 cut(s) 82, 395
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 2 cut(s) 15, 236
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 167, 569, 653
HphI GGTGA 2 cut(s) 14, 720
Hpy166II GTNNAC 6 cut(s) 178, 240, 470, 477, 511, 589
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 4 cut(s) 263, 522, 605, 659
Hpy8I GTNNAC 6 cut(s) 178, 240, 470, 477, 511, 589
HpyAV CCTTC 4 cut(s) 229, 281, 331, 351
HpyCH4III ACNGT 3 cut(s) 199, 474, 508
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 6 cut(s) 164, 511, 575, 650, 668, 677
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 444, 674, 680, 689, 797
HpyF3I CTNAG 6 cut(s) 282, 434, 515, 520, 606, 796
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 82, 395
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 2 cut(s) 565, 722
LmnI GCTCC 3 cut(s) 649, 661, 688
Lsp1109I GCAGC 3 cut(s) 116, 558, 661
LweI GCATC 1 cut(s) 670
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 20, 375, 776
MalI GATC 2 cut(s) 567, 724
MboI GATC 2 cut(s) 565, 722
MboII GAAGA 5 cut(s) 90, 590, 593, 717, 735
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 2 cut(s) 6, 576
MlyI GAGTC 2 cut(s) 24, 245
MmeI TCCRAC 2 cut(s) 659, 710
MnlI CCTC 6 cut(s) 191, 277, 443, 601, 642, 751
MseI TTAA 5 cut(s) 42, 137, 225, 333, 588
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 5 cut(s) 362, 674, 692, 762, 800
MspCI CTTAAG 2 cut(s) 136, 332
MspI CCGG 3 cut(s) 167, 569, 653
MspR9I CCNGG 2 cut(s) 720, 732
MvaI CCWGG 2 cut(s) 720, 732
MwoI GCNNNNNNNGC 6 cut(s) 110, 444, 674, 680, 689, 797
NdeII GATC 2 cut(s) 565, 722
NlaIII CATG 2 cut(s) 82, 395
NlaIV GGNNCC 2 cut(s) 505, 657
NmuCI GTSAC 3 cut(s) 20, 375, 776
OliI CACNNNNGTG 1 cut(s) 539
PaqCI CACCTGC 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 106, 402, 548, 676
PleI GAGTC 2 cut(s) 23, 244
PmaCI CACGTG 1 cut(s) 175
PmlI CACGTG 1 cut(s) 175
PpsI GAGTC 2 cut(s) 23, 244
Ppu21I YACGTR 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 718, 730
PspCI CACGTG 1 cut(s) 175
PspFI CCCAGC 4 cut(s) 154, 640, 762, 800
PspGI CCWGG 2 cut(s) 718, 730
PspN4I GGNNCC 2 cut(s) 505, 657
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 2 cut(s) 161, 647
PsuI RGATCY 1 cut(s) 722
PvuII CAGCTG 5 cut(s) 362, 674, 692, 762, 800
RsaI GTAC 3 cut(s) 37, 306, 476
RsaNI GTAC 3 cut(s) 36, 305, 475
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 5 cut(s) 42, 137, 225, 333, 588
SatI GCNGC 4 cut(s) 105, 401, 547, 675
Sau3AI GATC 2 cut(s) 565, 722
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 2 cut(s) 24, 245
ScrFI CCNGG 2 cut(s) 720, 732
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 5 cut(s) 136, 233, 251, 332, 371
SmoI CTYRAG 5 cut(s) 136, 233, 251, 332, 371
Sse9I AATT 2 cut(s) 6, 576
SsiI CCGC 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 718, 730
TaaI ACNGT 3 cut(s) 199, 474, 508
TaiI ACGT 1 cut(s) 177
TasI AATT 2 cut(s) 6, 576
TatI WGTACW 2 cut(s) 35, 474
TauI GCSGC 1 cut(s) 403
Tru1I TTAA 5 cut(s) 42, 137, 225, 333, 588
Tru9I TTAA 5 cut(s) 42, 137, 225, 333, 588
TscAI CASTG 5 cut(s) 202, 496, 556, 568, 628
TseFI GTSAC 3 cut(s) 20, 375, 776
TseI GCWGC 3 cut(s) 104, 546, 674
Tsp45I GTSAC 3 cut(s) 20, 375, 776
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 5 cut(s) 202, 496, 556, 568, 628
Vha464I CTTAAG 2 cut(s) 136, 332
VneI GTGCAC 1 cut(s) 509
XapI RAATTY 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 239
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.