RLG00000020971

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007968
Physical Location & Seq
Forward (+)
70607441 .. 70609247
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020971

Sequence Viewer

Length: 957 bp
ATGAGAAGCAGAGAAAAAGACGTCCCAAACCATTTCAGCCTTTATTGCATTAGCAAACTCTTCAAGAACCCATTTTCTCTCTCTGAGTTCCTCTGCTTGAGGTCAGTGTCCTTTGGTCTCAGGCTGCAGCTTTTTCAGGTTTTTTTTGGGAATTTGGAGAATCTGGTCAGATACAGAAAGTATCATTCAAGTTTTGGAACAATGGAACTTCCTGTGGTTTTCATGGCTGTACTGGTTCTGTGTTCATCAGCAGCATATGCTCAAACTGCCCCATCTCCCTCGCTAACCCCTACTCCAGCGCCAGCCCCAGCCCCCGAATTCGTGAACCTCACAGATTTGTTCTCTGTGGCTGGCCCATTCCACACCTTCCTTGGCTACCTTGAGTCAACCAAAGTGATTGAGACATTCCAAGACCAAGCCAACAAGACTGAGGAAGGCATAACCATCTTTGTCCCCAAAGATAGTGCTTTCACATCTCTTAAAAAACCTTCTCTGTCCAATCTCACCTCTGTCCAGCTCAAATCTCTGTTTCTATTCCATGCTTTGCCACATTACTACTCTTTGGCCGATTTCAGAAACCTCAGCAATATGAGCCCCGTGGCTACAATGGCTGGGGGACAATACACTTTGAACTTCACTGATGTATCAGGCACTGCGCATCTTACCTCAGGATGGTCAGTCACAAAAGTGAGCAGCAGTGTGCATTCCACAGACCCTGTTGCTGTTTACCAAGTTGACAAGGTTCTTCTTCCGGAGGCAATCTTCGGTACTGACATTCCACCAACCGCAGCCCCAGCACCAGCTCCGGAAATTGCTCCAGCTGCAGATGCTCCAAAAGCCGCAGACAGTAATGACTTGTCTCCAGGATCCTCACCAGATAAATCTTCTTCTTACAGAATTATGAGTTGGGGTCAATTGGTTTTGGCAATCTCAGGTGGACTGGTCCTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

319

Amino Acids

34.47

Weight (kDa)

6.37

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 119 - 251 4.2e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 657
AccIII TCCGGA 2 cut(s) 751, 805
AciI CCGC 2 cut(s) 786, 840
AclWI GGATC 2 cut(s) 861, 874
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 2 cut(s) 151, 317
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 231, 769
AfiI CCNNNNNNNGG 1 cut(s) 672
AgsI TTSAA 3 cut(s) 64, 189, 631
AjnI CCWGG 1 cut(s) 862
AjuI GAANNNNNNNTTGG 2 cut(s) 889, 921
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 4 cut(s) 130, 517, 803, 821
AluI AGCT 4 cut(s) 130, 517, 803, 821
Alw26I GTCTC 3 cut(s) 122, 395, 864
AlwI GGATC 2 cut(s) 861, 874
AlwNI CAGNNNCTG 2 cut(s) 653, 716
Aor13HI TCCGGA 2 cut(s) 751, 805
AoxI GGCC 2 cut(s) 352, 564
ApeKI GCWGC 6 cut(s) 124, 127, 251, 693, 788, 821
ApoI RAATTY 2 cut(s) 151, 317
AspLEI GCGC 2 cut(s) 301, 658
AspS9I GGNCC 2 cut(s) 353, 943
AsuHPI GGTGA 2 cut(s) 496, 864
AvaII GGWCC 1 cut(s) 943
AxyI CCTNAGG 1 cut(s) 667
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BamHI GGATCC 1 cut(s) 866
BanII GRGCYC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 581
BbvI GCAGC 6 cut(s) 111, 139, 263, 705, 800, 808
BccI CCATC 3 cut(s) 280, 452, 666
BciT130I CCWGG 1 cut(s) 864
BcoDI GTCTC 3 cut(s) 122, 395, 864
BfmI CTRYAG 2 cut(s) 125, 822
BfoI RGCGCY 1 cut(s) 302
BisI GCNGC 7 cut(s) 125, 128, 252, 694, 789, 822, 840
BlsI GCNGC 7 cut(s) 126, 129, 253, 695, 790, 823, 841
Bme1390I CCNGG 1 cut(s) 864
Bme18I GGWCC 1 cut(s) 943
BmgT120I GGNCC 2 cut(s) 353, 943
BmiI GGNNCC 1 cut(s) 868
BmrFI CCNGG 1 cut(s) 864
BmsI GCATC 2 cut(s) 667, 817
BpmI CTGGAG 3 cut(s) 279, 801, 846
Bpu10I CCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 118, 401
BsaHI GRCGYC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 370, 597
BsaWI WCCGGW 2 cut(s) 751, 805
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 672
Bse1I ACTGG 2 cut(s) 237, 945
Bse21I CCTNAGG 1 cut(s) 667
BseAI TCCGGA 2 cut(s) 751, 805
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 2 cut(s) 370, 597
BseGI GGATG 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 672
BseMII CTCAG 6 cut(s) 75, 133, 420, 595, 681, 945
BseNI ACTGG 2 cut(s) 237, 945
BseXI GCAGC 6 cut(s) 111, 139, 263, 705, 800, 808
BseYI CCCAGC 3 cut(s) 307, 611, 793
BshFI GGCC 2 cut(s) 354, 566
BsiSI CCGG 2 cut(s) 752, 806
BslFI GGGAC 3 cut(s) 8, 437, 630
BslI CCNNNNNNNGG 1 cut(s) 672
BsmAI GTCTC 3 cut(s) 122, 395, 864
BsmFI GGGAC 3 cut(s) 8, 437, 630
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 354, 566
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 596
Bsp13I TCCGGA 2 cut(s) 751, 805
Bsp143I GATC 1 cut(s) 866
BspACI CCGC 2 cut(s) 786, 840
BspANI GGCC 2 cut(s) 354, 566
BspCNI CTCAG 6 cut(s) 76, 132, 421, 594, 680, 944
BspEI TCCGGA 2 cut(s) 751, 805
BspLI GGNNCC 1 cut(s) 868
BspMAI CTGCAG 2 cut(s) 129, 826
BspPI GGATC 2 cut(s) 861, 874
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 237, 945
BssECI CCNNGG 2 cut(s) 370, 597
BssMI GATC 1 cut(s) 866
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 1 cut(s) 848
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 303, 352
BstDEI CTNAG 6 cut(s) 84, 119, 429, 581, 667, 931
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 677
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 301, 658
BstKTI GATC 1 cut(s) 869
BstMAI GTCTC 3 cut(s) 122, 395, 864
BstMBI GATC 1 cut(s) 866
BstMWI GCNNNNNNNGC 9 cut(s) 45, 257, 266, 591, 608, 794, 821, 827, 836
BstNI CCWGG 1 cut(s) 864
BstSCI CCNGG 1 cut(s) 862
BstSFI CTRYAG 2 cut(s) 125, 822
BstV1I GCAGC 6 cut(s) 111, 139, 263, 705, 800, 808
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
Bsu36I CCTNAGG 1 cut(s) 667
BsuRI GGCC 2 cut(s) 354, 566
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 677
BtsI GCAGTG 2 cut(s) 651, 703
BtsIMutI CAGTG 4 cut(s) 111, 636, 651, 703
Cac8I GCNNGC 2 cut(s) 303, 352
CaiI CAGNNNCTG 2 cut(s) 653, 716
CfoI GCGC 2 cut(s) 301, 658
Cfr13I GGNCC 2 cut(s) 353, 943
Csp6I GTAC 2 cut(s) 230, 768
CviAII CATG 2 cut(s) 223, 539
CviQI GTAC 2 cut(s) 230, 768
DdeI CTNAG 6 cut(s) 84, 119, 429, 581, 667, 931
DpnI GATC 1 cut(s) 868
DpnII GATC 1 cut(s) 866
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 596
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 943
Eco81I CCTNAGG 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 226, 542
FaiI YATR 7 cut(s) 224, 256, 258, 440, 540, 590, 902
FaqI GGGAC 3 cut(s) 8, 437, 630
FatI CATG 2 cut(s) 222, 538
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 7 cut(s) 125, 128, 252, 694, 789, 822, 840
FokI GGATG 1 cut(s) 684
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 7 cut(s) 125, 128, 252, 694, 789, 822, 840
FspI TGCGCA 1 cut(s) 657
GlaI GCGC 2 cut(s) 300, 657
GluI GCNGC 7 cut(s) 125, 128, 252, 694, 789, 822, 840
GsaI CCCAGC 3 cut(s) 311, 615, 797
GsuI CTGGAG 3 cut(s) 279, 801, 846
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 354, 566
HapII CCGG 2 cut(s) 752, 806
HhaI GCGC 2 cut(s) 301, 658
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 226, 542
Hin6I GCGC 2 cut(s) 299, 656
HinP1I GCGC 2 cut(s) 299, 656
HincII GTYRAC 2 cut(s) 387, 736
HindII GTYRAC 2 cut(s) 387, 736
HinfI GANTC 2 cut(s) 160, 383
HpaII CCGG 2 cut(s) 752, 806
HphI GGTGA 2 cut(s) 496, 864
Hpy166II GTNNAC 5 cut(s) 325, 387, 727, 736, 938
Hpy188I TCNGA 3 cut(s) 85, 170, 575
Hpy188III TCNNGA 5 cut(s) 64, 322, 669, 752, 806
Hpy8I GTNNAC 5 cut(s) 325, 387, 727, 736, 938
HpyAV CCTTC 3 cut(s) 376, 428, 498
HpyCH4III ACNGT 1 cut(s) 848
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 48, 127, 703, 824
HpyF10VI GCNNNNNNNGC 9 cut(s) 45, 257, 266, 591, 608, 794, 821, 827, 836
HpyF3I CTNAG 6 cut(s) 84, 119, 429, 581, 667, 931
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 226, 542
HspAI GCGC 2 cut(s) 299, 656
Kpn2I TCCGGA 2 cut(s) 751, 805
Kzo9I GATC 1 cut(s) 866
LmnI GCTCC 3 cut(s) 808, 820, 835
Lsp1109I GCAGC 6 cut(s) 111, 139, 263, 705, 800, 808
LweI GCATC 2 cut(s) 667, 817
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 679
MalI GATC 1 cut(s) 868
MboI GATC 1 cut(s) 866
MboII GAAGA 6 cut(s) 52, 737, 740, 754, 876, 879
MfeI CAATTG 1 cut(s) 914
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 1 cut(s) 596
MluCI AATT 5 cut(s) 151, 317, 810, 897, 914
MlyI GAGTC 1 cut(s) 392
MroI TCCGGA 2 cut(s) 751, 805
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 752, 806
MspR9I CCNGG 1 cut(s) 864
MunI CAATTG 1 cut(s) 914
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 9 cut(s) 45, 257, 266, 591, 608, 794, 821, 827, 836
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 866
NlaIII CATG 2 cut(s) 226, 542
NlaIV GGNNCC 1 cut(s) 868
NmuCI GTSAC 1 cut(s) 679
NsbI TGCGCA 1 cut(s) 657
OliI CACNNNNGTG 1 cut(s) 686
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 7 cut(s) 126, 129, 253, 695, 790, 823, 841
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 3 cut(s) 307, 611, 793
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 1 cut(s) 868
PspPI GGNCC 2 cut(s) 353, 943
PstI CTGCAG 2 cut(s) 129, 826
PstNI CAGNNNCTG 2 cut(s) 653, 716
PsuI RGATCY 1 cut(s) 866
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 231, 769
RsaNI GTAC 2 cut(s) 230, 768
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 7 cut(s) 125, 128, 252, 694, 789, 822, 840
Sau3AI GATC 1 cut(s) 866
Sau96I GGNCC 2 cut(s) 353, 943
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 864
SduI GDGCHC 1 cut(s) 596
SfaNI GCATC 2 cut(s) 667, 817
SfcI CTRYAG 2 cut(s) 125, 822
SinI GGWCC 1 cut(s) 943
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 2 cut(s) 97, 380
SmoI CTYRAG 2 cut(s) 97, 380
Sse9I AATT 5 cut(s) 151, 317, 810, 897, 914
SsiI CCGC 2 cut(s) 786, 840
StyD4I CCNGG 1 cut(s) 862
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 848
TaiI ACGT 1 cut(s) 24
TasI AATT 5 cut(s) 151, 317, 810, 897, 914
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 842
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 4 cut(s) 111, 643, 658, 703
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 6 cut(s) 124, 127, 251, 693, 788, 821
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 2 cut(s) 211, 234
TspRI CASTG 4 cut(s) 111, 643, 658, 703
VpaK11BI GGWCC 1 cut(s) 943
XapI RAATTY 2 cut(s) 151, 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.