Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004059

Physical Location & Seq

Genomic Coordinates Forward (+)

1679307 .. 1680543

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04790.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCTCTCTCTTCACACCATCACCAACCACCACTAGTAGTAGTGGAGACACCATCTATGTAGCGGCGGTGCCGCTTAAAGCCGCGGCCGGTCCGCCGCAACTTATTATGTCAATGGCTTACTCACTTAATATCTCAAATTTACAACATTTCATGGTCCTCATCAAACCTTCTTCTCCAATCCGTCAAGAGGTTCTTGTGTTTGATTTTCAGCCACGTAACCCTGAAAGCATAGAAGCAGCAATCTCACTTTTGTCAGGAAATTTGATTCCAGGTGTAGTTTTGCAAAGAAGGTTGAAGAATGTTCCAAGACAAAGATGTTGGATGGTTGGACCATCTAAAGGGAATGATGCTATGGAAATGGCAATGGAGTTTAATAAGTCATGGGAGACTGATTTGAGAGTTGGATTTCATGATTGCCGACATTATACCAATGGTTTAGTGTTATACAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.87

Weight (kDa)

9.03

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790
fragaria_vesca	FvH4_6g41490
malus_domestica	MD09G1119400.v1.1 MD17G1110300.v1.1
prunus_persica	Prupe.3G204800_v2.0.a1 Prupe.3G204800_v2.0.a1
pyrus_communis	pycom09g04430 pycom17g10260
rosa_chinensis	RchiOBHm_Chr2g0157151
rosa_laevigata	RLG00000020965
rosa_multiflora	Rmu_sc0006282.1_g000023
rosa_roxburghii	Rroxscaffold_2G00092480
rosa_rugosa	Rorug02G0457800
rosa_samantha	Rh2AG523500 Rh2CG508200 Rh2DG546600
rosa_wichuraiana	Rw2G031090 Rw2G043290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	86
AciI	CCGC	7 cut(s)	65, 68, 74, 84, 86, 95, 98
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	139, 262
AfiI	CCNNNNNNNGG	2 cut(s)	190, 341
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	2 cut(s)	42, 383
AoxI	GGCC	2 cut(s)	3, 87
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	139, 262
AspS9I	GGNCC	3 cut(s)	92, 157, 332
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	3 cut(s)	92, 157, 332
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	4 cut(s)	28, 62, 319, 343
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	42, 383
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	6 cut(s)	66, 74, 84, 87, 98, 240
BlsI	GCNGC	6 cut(s)	67, 75, 85, 88, 99, 241
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	3 cut(s)	92, 157, 332
BmgT120I	GGNCC	3 cut(s)	92, 157, 332
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 341
Bse118I	RCCGGY	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	190, 341
BseMI	GCAATG	1 cut(s)	372
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	5, 89
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	190, 341
BsmAI	GTCTC	2 cut(s)	42, 383
BsnI	GGCC	2 cut(s)	5, 89
BspACI	CCGC	7 cut(s)	65, 68, 74, 84, 86, 95, 98
BspANI	GGCC	2 cut(s)	5, 89
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	86
BstMAI	GTCTC	2 cut(s)	42, 383
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	251
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	5, 89
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	330
CciI	TCATGA	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	92, 157, 332
Cfr42I	CCGCGG	1 cut(s)	87
CpoI	CGGWCCG	1 cut(s)	92
CspI	CGGWCCG	1 cut(s)	92
CviAII	CATG	3 cut(s)	154, 384, 413
CviJI	RGCY	6 cut(s)	5, 83, 89, 119, 214, 454
CviKI_1	RGCY	6 cut(s)	5, 83, 89, 119, 214, 454
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	92, 157, 332
Eco52I	CGGCCG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	157, 387, 416
FaiI	YATR	9 cut(s)	60, 110, 155, 233, 356, 385, 414, 429, 448
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	3 cut(s)	153, 383, 412
Fnu4HI	GCNGC	6 cut(s)	66, 74, 84, 87, 98, 240
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	6 cut(s)	66, 74, 84, 87, 98, 240
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	6 cut(s)	66, 74, 84, 87, 98, 240
HaeIII	GGCC	2 cut(s)	5, 89
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	3 cut(s)	157, 387, 416
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	188, 258, 413
HpyAV	CCTTC	2 cut(s)	180, 285
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	157, 387, 416
KspI	CCGCGG	1 cut(s)	87
LpnPI	CCDG	5 cut(s)	103, 237, 243, 258, 285
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	4, 165, 310
MluCI	AATT	2 cut(s)	139, 262
MmeI	TCCRAC	3 cut(s)	302, 310, 385
MnlI	CCTC	3 cut(s)	16, 170, 184
MseI	TTAA	4 cut(s)	78, 129, 375, 457
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	86
NlaIII	CATG	3 cut(s)	157, 387, 416
NlaIV	GGNNCC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	67, 75, 85, 88, 99, 241
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	3 cut(s)	92, 157, 332
Rsr2I	CGGWCCG	1 cut(s)	92
RsrII	CGGWCCG	1 cut(s)	92
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	78, 129, 375, 457
SatI	GCNGC	6 cut(s)	66, 74, 84, 87, 98, 240
Sau96I	GGNCC	3 cut(s)	92, 157, 332
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	6 cut(s)	172, 195, 220, 277, 296, 456
SfaNI	GCATC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	3 cut(s)	92, 157, 332
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	2 cut(s)	139, 262
SsiI	CCGC	7 cut(s)	65, 68, 74, 84, 86, 95, 98
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	271
TaiI	ACGT	1 cut(s)	220
TasI	AATT	2 cut(s)	139, 262
TauI	GCSGC	5 cut(s)	68, 76, 86, 89, 100
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	78, 129, 375, 457
Tru9I	TTAA	4 cut(s)	78, 129, 375, 457
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	142, 401
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	3 cut(s)	92, 157, 332
XapI	RAATTY	2 cut(s)	139, 262
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.