Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004059

Physical Location & Seq

Genomic Coordinates Reverse (-)

77533433 .. 77536481

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG546600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGTCATCTCTTCTTATGAAACCAACAGTCAGCAGTAATAGAGATGAGGTGTTTGTTGCAGCAGTGCCTCTAAGAGCCGCAAAAGGACCTGCCCAGCTCCTCACCTCTACTGCTTACTCTCTCAATCTCTGGGATTTGCAGCACTTCATGGTCATCATTAAGCCCTCCTCACCACCACCACATTCTCAGGCTTTGGTTTTTGATTTTCAACCTAAAGATCCTGAAAACATATATGCAGCACTTGCAGTTCTATCTGGTAAAGCAATACCAGGAGTTATTCTAACAAGGAAGTTATCAAAGCTTCCAAGAACCAAATGCTGGTTTGTTGGATCTTCCAAAGCAGGTGCCATCGATAAAGCTAGTGAATTTAACAAAGTCTGGAAAACTCATCTAAGGGTTGGCCATCATGATTGTCGAAACTATACCAATGGTACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.1

Weight (kDa)

9.85

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790
fragaria_vesca	FvH4_6g41490
malus_domestica	MD09G1119400.v1.1 MD17G1110300.v1.1
prunus_persica	Prupe.3G204800_v2.0.a1 Prupe.3G204800_v2.0.a1
pyrus_communis	pycom09g04430 pycom17g10260
rosa_chinensis	RchiOBHm_Chr2g0157151
rosa_laevigata	RLG00000020965
rosa_multiflora	Rmu_sc0006282.1_g000023
rosa_roxburghii	Rroxscaffold_2G00092480
rosa_rugosa	Rorug02G0457800
rosa_samantha	Rh2AG523500 Rh2CG508200 Rh2DG546600
rosa_wichuraiana	Rw2G031090 Rw2G043290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	2 cut(s)	100, 335
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	215, 340
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	100, 304, 362
AluI	AGCT	3 cut(s)	100, 304, 362
AlwI	GGATC	2 cut(s)	215, 340
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	62, 142, 239
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	97, 165
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	74, 154, 251
BccI	CCATC	2 cut(s)	359, 414
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	100, 335
BisI	GCNGC	4 cut(s)	63, 81, 143, 240
BlsI	GCNGC	4 cut(s)	64, 82, 144, 241
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	92, 160
BseXI	GCAGC	3 cut(s)	74, 154, 251
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	321
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	220, 332
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	2 cut(s)	100, 335
BspPI	GGATC	2 cut(s)	215, 340
BspT107I	GGYRCC	1 cut(s)	347
BssMI	GATC	2 cut(s)	220, 332
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	74, 189, 395
BstKTI	GATC	2 cut(s)	223, 335
BstMBI	GATC	2 cut(s)	220, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	74, 154, 251
BstX2I	RGATCY	2 cut(s)	220, 332
BstYI	RGATCY	2 cut(s)	220, 332
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	2 cut(s)	100, 335
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	2 cut(s)	151, 410
CviJI	RGCY	7 cut(s)	80, 100, 166, 194, 304, 362, 405
CviKI_1	RGCY	7 cut(s)	80, 100, 166, 194, 304, 362, 405
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	74, 189, 395
DpnI	GATC	2 cut(s)	222, 334
DpnII	GATC	2 cut(s)	220, 332
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	154, 413
FaiI	YATR	8 cut(s)	20, 152, 233, 235, 237, 411, 426, 442
FatI	CATG	2 cut(s)	150, 409
Fnu4HI	GCNGC	4 cut(s)	63, 81, 143, 240
Fsp4HI	GCNGC	4 cut(s)	63, 81, 143, 240
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	4 cut(s)	63, 81, 143, 240
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	154, 413
HindIII	AAGCTT	1 cut(s)	302
HphI	GGTGA	2 cut(s)	97, 165
Hpy188III	TCNNGA	3 cut(s)	224, 382, 410
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	62, 142, 239, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	3 cut(s)	74, 189, 395
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	154, 413
Kzo9I	GATC	2 cut(s)	220, 332
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	74, 154, 251
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	437
MalI	GATC	2 cut(s)	222, 334
MboI	GATC	2 cut(s)	220, 332
MboII	GAAGA	2 cut(s)	5, 327
MflI	RGATCY	2 cut(s)	220, 332
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	43, 81, 113, 118, 178, 181
Mox20I	TGGCCA	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	2 cut(s)	162, 372
Msp20I	TGGCCA	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	220, 332
NlaIII	CATG	2 cut(s)	154, 413
NlaIV	GGNNCC	1 cut(s)	349
PagI	TCATGA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	64, 82, 144, 241
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	220, 332
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	162, 372
SatI	GCNGC	4 cut(s)	63, 81, 143, 240
Sau3AI	GATC	2 cut(s)	220, 332
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	9 cut(s)	54, 94, 102, 110, 217, 306, 349, 364, 440
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	354, 418
TasI	AATT	1 cut(s)	368
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	162, 372
Tru9I	TTAA	2 cut(s)	162, 372
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	3 cut(s)	62, 142, 239
TspDTI	ATGAA	2 cut(s)	35, 139
TspRI	CASTG	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	368
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.