Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004059

Physical Location & Seq

Genomic Coordinates Reverse (-)

21267236 .. 21269277

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTCACTGCTCATGAAACCTACAGTAACCAAAGGAAGAGATGAGGTGTATGTTGCAGCAGTGCCTCTAAGAGCCACAAAAGGGCCTGCTCAGCTTCTTGCCTCTTCTGCTCACTCTCTCAATCTCTGGGATTTGCAGCATTTCATGGTTATTGTTAAACCCTCCTCACCTCCATCTCATTCTCAGGCCTTGGTTTTTGATTTTCAACCAAAAGATCCTGAAAACATATTTGCAGCCCTTGCAGTTCTCTCTGGAAAAGCAATACCAGGAGTTGTTCTTATGAGGAAGTTGTCAAAACTCCCCAGAAGCAAATGCTGGTTTGTTGGGTCTCCCAAAGCAGGTGCCATAGATATGGCACTTGAATTCAACAAAGTCTGGGACACTAATTTGAGGGTTGGCCATCACGATTGTCGAGATTATACCAATGGCTTGGTCCAGTACCTAACAGGTGAAGGGTACATCCTGGAGCGTTTGAGAAGTAGTGTGCGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.21

Weight (kDa)

9.48

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790
fragaria_vesca	FvH4_6g41490
malus_domestica	MD09G1119400.v1.1 MD17G1110300.v1.1
prunus_persica	Prupe.3G204800_v2.0.a1 Prupe.3G204800_v2.0.a1
pyrus_communis	pycom09g04430 pycom17g10260
rosa_chinensis	RchiOBHm_Chr2g0157151
rosa_laevigata	RLG00000020965
rosa_multiflora	Rmu_sc0006282.1_g000023
rosa_roxburghii	Rroxscaffold_2G00092480
rosa_rugosa	Rorug02G0457800
rosa_samantha	Rh2AG523500 Rh2CG508200 Rh2DG546600
rosa_wichuraiana	Rw2G031090 Rw2G043290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	443, 461
AfiI	CCNNNNNNNGG	2 cut(s)	84, 341
AgsI	TTSAA	3 cut(s)	209, 365, 370
AjnI	CCWGG	2 cut(s)	268, 465
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	3 cut(s)	86, 189, 400
ApeKI	GCWGC	3 cut(s)	59, 139, 236
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	86, 436
AsuHPI	GGTGA	2 cut(s)	162, 464
AvaII	GGWCC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	71, 151, 248
BccI	CCATC	2 cut(s)	184, 411
BciT130I	CCWGG	2 cut(s)	270, 467
BcoDI	GTCTC	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	60, 140, 237
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	3 cut(s)	61, 141, 238
Bme1390I	CCNGG	2 cut(s)	270, 467
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	86, 436
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	270, 467
BpmI	CTGGAG	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 341
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	270, 467
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	84, 341
BseMII	CTCAG	2 cut(s)	107, 200
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	71, 151, 248
BshFI	GGCC	3 cut(s)	88, 191, 402
BshNI	GGYRCC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	84, 341
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	88, 191, 402
Bso31I	GGTCTC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	88, 191, 402
BspCNI	CTCAG	2 cut(s)	106, 199
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	270, 467
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	34, 112
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	71, 93, 186
BstF5I	GGATG	1 cut(s)	462
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 110, 242
BstNI	CCWGG	2 cut(s)	270, 467
BstSCI	CCNGG	2 cut(s)	268, 465
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	71, 151, 248
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	2 cut(s)	355, 433
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	88, 191, 402
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	2 cut(s)	8, 69
BtsIMutI	CAGTG	2 cut(s)	8, 69
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	90
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	86, 436
Csp6I	GTAC	2 cut(s)	442, 460
CviAII	CATG	2 cut(s)	16, 148
CviJI	RGCY	8 cut(s)	5, 77, 88, 97, 191, 239, 402, 432
CviKI_1	RGCY	8 cut(s)	5, 77, 88, 97, 191, 239, 402, 432
CviQI	GTAC	2 cut(s)	442, 460
DdeI	CTNAG	3 cut(s)	71, 93, 186
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	34, 112
EarI	CTCTTC	2 cut(s)	34, 112
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	268, 465
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	19, 151
FaiI	YATR	8 cut(s)	17, 54, 149, 230, 284, 350, 356, 423
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	15, 147
Fnu4HI	GCNGC	3 cut(s)	60, 140, 237
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	3 cut(s)	60, 140, 237
GluI	GCNGC	3 cut(s)	60, 140, 237
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	88, 191, 402
Hin1II	CATG	2 cut(s)	19, 151
HphI	GGTGA	2 cut(s)	162, 464
Hpy188III	TCNNGA	5 cut(s)	16, 221, 255, 407, 416
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	59, 139, 236, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 110, 242
HpyF3I	CTNAG	3 cut(s)	71, 93, 186
Hsp92II	CATG	2 cut(s)	19, 151
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	3 cut(s)	71, 151, 248
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	51, 99
MflI	RGATCY	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	365, 388
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	8 cut(s)	40, 78, 115, 175, 178, 183, 279, 387
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	270, 467
MvaI	CCWGG	2 cut(s)	270, 467
MwoI	GCNNNNNNNGC	3 cut(s)	94, 110, 242
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	19, 151
NlaIV	GGNNCC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	61, 141, 238
Psp6I	CCWGG	2 cut(s)	268, 465
PspGI	CCWGG	2 cut(s)	268, 465
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	86, 436
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	443, 461
RsaNI	GTAC	2 cut(s)	442, 460
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	60, 140, 237
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	86, 436
ScrFI	CCNGG	2 cut(s)	270, 467
SetI	ASST	7 cut(s)	25, 51, 99, 175, 346, 447, 454
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	365, 388
SseBI	AGGCCT	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	268, 465
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	365, 388
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	15, 69
TseI	GCWGC	3 cut(s)	59, 139, 236
TspDTI	ATGAA	2 cut(s)	32, 136
TspRI	CASTG	2 cut(s)	15, 69
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.