Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004059

Physical Location & Seq

Genomic Coordinates Forward (+)

9217610 .. 9220493

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1119400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTCACTGCTCACGAAACCAACAGTGACAAGAGGACGGGATGAAGTTTATGTTGCAGCAGTGCCTCTAAGAGCAACAAAAGGACCCGCCCAGCTGCTTACATCTGCTGCTTACTCTCTCAATCTCTGGAATTTGCAGCATTTCATGGTTATCATTAATCCCTCCCCACCACCACCTGATTGTCAGGCCATAGTATTCGATTTTCAACCTAAAGATCCTGAAAACATATATGCAGCCCTTGCAGTTCTATCCGGAAAAGCAATACCGGGAGTTGTTCTTATGAGGAAGTTGTCGAAACTGCCGAGAAGAAAATGCTGGTACGTTGGTTCTCCCAAAGGATCAGGTGCCATAGATATGGCACTCGAATTCAACAAACAGTGGGAAACTAAGCTGAGAGTTGGTCATCATGATTGTCGGAATTATACCAATGGCTTGGTCGAGTACCTGACCGATGAAGAACATATCTTGGAGCGTTTGGAAGGAAAACGGAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.66

Weight (kDa)

9.32

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790
fragaria_vesca	FvH4_6g41490
malus_domestica	MD09G1119400.v1.1 MD17G1110300.v1.1
prunus_persica	Prupe.3G204800_v2.0.a1 Prupe.3G204800_v2.0.a1
pyrus_communis	pycom09g04430 pycom17g10260
rosa_chinensis	RchiOBHm_Chr2g0157151
rosa_laevigata	RLG00000020965
rosa_multiflora	Rmu_sc0006282.1_g000023
rosa_roxburghii	Rroxscaffold_2G00092480
rosa_rugosa	Rorug02G0457800
rosa_samantha	Rh2AG523500 Rh2CG508200 Rh2DG546600
rosa_wichuraiana	Rw2G031090 Rw2G043290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	212, 349
AcsI	RAATTY	2 cut(s)	133, 368
AfaI	GTAC	2 cut(s)	323, 446
AgsI	TTSAA	2 cut(s)	209, 373
AluBI	AGCT	2 cut(s)	97, 394
AluI	AGCT	2 cut(s)	97, 394
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	212, 349
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	2 cut(s)	3, 189
ApeKI	GCWGC	5 cut(s)	59, 97, 110, 139, 236
ApoI	RAATTY	2 cut(s)	133, 368
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BanI	GGYRCC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	71, 84, 97, 151, 248
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	487
BisI	GCNGC	5 cut(s)	60, 98, 111, 140, 237
BlsI	GCNGC	5 cut(s)	61, 99, 112, 141, 238
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	88, 349
BmrFI	CCNGG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	254
BseGI	GGATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	386
BseXI	GCAGC	5 cut(s)	71, 84, 97, 151, 248
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	5, 191
BshNI	GGYRCC	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	255, 269
BsmAI	GTCTC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	5, 191
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	217, 341
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	5, 191
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	88, 349
BspPI	GGATC	2 cut(s)	212, 349
BspT107I	GGYRCC	1 cut(s)	347
BssMI	GATC	2 cut(s)	217, 341
Bst4CI	ACNGT	2 cut(s)	28, 381
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	71, 390, 395
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	220, 344
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	217, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	5 cut(s)	71, 84, 97, 151, 248
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	2 cut(s)	358, 436
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	5, 191
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	2 cut(s)	8, 69
BtsIMutI	CAGTG	4 cut(s)	8, 33, 69, 386
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	322, 445
CviAII	CATG	2 cut(s)	148, 410
CviJI	RGCY	6 cut(s)	5, 97, 191, 239, 394, 435
CviKI_1	RGCY	6 cut(s)	5, 97, 191, 239, 394, 435
CviQI	GTAC	2 cut(s)	322, 445
DdeI	CTNAG	3 cut(s)	71, 390, 395
DpnI	GATC	2 cut(s)	219, 343
DpnII	GATC	2 cut(s)	217, 341
Eco47I	GGWCC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	368
FaeI	CATG	2 cut(s)	151, 413
FatI	CATG	2 cut(s)	147, 409
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	60, 98, 111, 140, 237
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	60, 98, 111, 140, 237
GluI	GCNGC	5 cut(s)	60, 98, 111, 140, 237
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	5, 191
HapII	CCGG	2 cut(s)	255, 269
Hin1II	CATG	2 cut(s)	151, 413
HpaII	CCGG	2 cut(s)	255, 269
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	5 cut(s)	16, 130, 221, 255, 410
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	28, 381
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	59, 139, 236, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	71, 390, 395
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	151, 413
Kpn2I	TCCGGA	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	217, 341
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	5 cut(s)	71, 84, 97, 151, 248
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	219, 343
MboI	GATC	2 cut(s)	217, 341
MboII	GAAGA	2 cut(s)	321, 470
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	3 cut(s)	133, 368, 421
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	5 cut(s)	16, 29, 78, 175, 279
MroI	TCCGGA	1 cut(s)	254
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	2 cut(s)	255, 269
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	217, 341
NlaIII	CATG	2 cut(s)	151, 413
NlaIV	GGNNCC	2 cut(s)	88, 349
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	61, 99, 112, 141, 238
PpuMI	RGGWCCY	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	88, 349
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	323, 446
RsaNI	GTAC	2 cut(s)	322, 445
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	60, 98, 111, 140, 237
Sau3AI	GATC	2 cut(s)	217, 341
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	7 cut(s)	99, 181, 214, 327, 349, 396, 450
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	133, 368, 421
SsiI	CCGC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	28, 381
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	201, 296, 366, 441
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	3 cut(s)	133, 368, 421
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	4 cut(s)	15, 33, 69, 386
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	5 cut(s)	59, 97, 110, 139, 236
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	60, 136, 471
TspRI	CASTG	4 cut(s)	15, 33, 69, 386
VpaK11BI	GGWCC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	133, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.