Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004059

Physical Location & Seq

Genomic Coordinates Forward (+)

3262784 .. 3265179

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04430.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAAGTTCAATATTTTTTTTTCTTTTTTTTGGAAAACCAAATGGCCTCACTGCTCACGAAACCAACAGTGACAAGAGGAAGGGATGAAGTTTATGTTGCAGCAGTGCCTCTAAGAGCAACAAAGGGACCCGCCCAGCTGCTTACATCTGCTGCTTACTCTCTCAATCTCTGGAATTTGCAGCATTTCATGGTTATCATTAGACCCTCCCCACCACCACCTGATTGTCAGGCCTTAGTTTTCGATTTTCAACCTAAAGATCCTGAAAACATATATGCAGCCCTTGCAGTTCTATCCGGAAAAGCAATACCGGGAGTTGTTCTTATGAGGAAGTCATCGAAACTGCCGAGAAGAAAATGCTGGTACGTTGGTTCTCCCAAAGGATCAGGTGCCATAGATATGGCACTTGAATTCAACAAACTGTGGGAAACTAAGCTGAGAGTTGGCCATCATGATTGTCGGAATTATACCAATGGCTTGGTCGAGTATCTGACCGATGAAGAACATATCTTGGAGCGTTTAGAAGGAAAACGGAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.54

Weight (kDa)

9.4

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790 AT2G04790
fragaria_vesca	FvH4_6g41490
malus_domestica	MD09G1119400.v1.1 MD17G1110300.v1.1
prunus_persica	Prupe.3G204800_v2.0.a1 Prupe.3G204800_v2.0.a1
pyrus_communis	pycom09g04430 pycom17g10260
rosa_chinensis	RchiOBHm_Chr2g0157151
rosa_laevigata	RLG00000020965
rosa_multiflora	Rmu_sc0006282.1_g000023
rosa_roxburghii	Rroxscaffold_2G00092480
rosa_rugosa	Rorug02G0457800
rosa_samantha	Rh2AG523500 Rh2CG508200 Rh2DG546600
rosa_wichuraiana	Rw2G031090 Rw2G043290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	254, 391
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	175, 410
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	11, 251, 410, 415
AluBI	AGCT	2 cut(s)	139, 436
AluI	AGCT	2 cut(s)	139, 436
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	254, 391
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	3 cut(s)	45, 231, 445
ApeKI	GCWGC	5 cut(s)	101, 139, 152, 181, 278
ApoI	RAATTY	2 cut(s)	175, 410
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BalI	TGGCCA	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	389
BbvI	GCAGC	5 cut(s)	113, 126, 139, 193, 290
BccI	CCATC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	529
BisI	GCNGC	5 cut(s)	102, 140, 153, 182, 279
BlsI	GCNGC	5 cut(s)	103, 141, 154, 183, 280
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	129, 130, 391
BmrFI	CCNGG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	296
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	428
BseXI	GCAGC	5 cut(s)	113, 126, 139, 193, 290
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	3 cut(s)	47, 233, 447
BshNI	GGYRCC	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	297, 311
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	47, 233, 447
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	259, 383
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	3 cut(s)	47, 233, 447
BspCNI	CTCAG	1 cut(s)	429
BspEI	TCCGGA	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	129, 130, 391
BspPI	GGATC	2 cut(s)	254, 391
BspT107I	GGYRCC	1 cut(s)	389
BssMI	GATC	2 cut(s)	259, 383
Bst4CI	ACNGT	2 cut(s)	70, 423
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	4 cut(s)	113, 235, 432, 437
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	262, 386
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	2 cut(s)	259, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	5 cut(s)	113, 126, 139, 193, 290
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	2 cut(s)	400, 478
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	47, 233, 447
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	2 cut(s)	50, 111
BtsIMutI	CAGTG	3 cut(s)	50, 75, 111
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	190, 452
CviJI	RGCY	7 cut(s)	47, 139, 233, 281, 436, 447, 477
CviKI_1	RGCY	7 cut(s)	47, 139, 233, 281, 436, 447, 477
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	4 cut(s)	113, 235, 432, 437
DpnI	GATC	2 cut(s)	261, 385
DpnII	GATC	2 cut(s)	259, 383
EaeI	YGGCCR	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	193, 455
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	189, 451
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	102, 140, 153, 182, 279
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	5 cut(s)	102, 140, 153, 182, 279
GluI	GCNGC	5 cut(s)	102, 140, 153, 182, 279
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	47, 233, 447
HapII	CCGG	2 cut(s)	297, 311
Hin1II	CATG	2 cut(s)	193, 455
HpaII	CCGG	2 cut(s)	297, 311
Hpy188I	TCNGA	2 cut(s)	462, 492
Hpy188III	TCNNGA	5 cut(s)	58, 172, 263, 297, 452
HpyAV	CCTTC	2 cut(s)	75, 518
HpyCH4III	ACNGT	2 cut(s)	70, 423
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	101, 181, 278, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	113, 235, 432, 437
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	193, 455
KflI	GGGWCCC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	259, 383
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	9 cut(s)	149, 157, 215, 234, 276, 310, 324, 346, 372
Lsp1109I	GCAGC	5 cut(s)	113, 126, 139, 193, 290
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	261, 385
MboI	GATC	2 cut(s)	259, 383
MboII	GAAGA	2 cut(s)	363, 512
MflI	RGATCY	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	3 cut(s)	175, 410, 463
MluNI	TGGCCA	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	5 cut(s)	58, 71, 120, 217, 321
Mox20I	TGGCCA	1 cut(s)	447
MroI	TCCGGA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	297, 311
MspR9I	CCNGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	259, 383
NlaIII	CATG	2 cut(s)	193, 455
NlaIV	GGNNCC	3 cut(s)	129, 130, 391
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	103, 141, 154, 183, 280
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	129, 130, 391
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	398
SatI	GCNGC	5 cut(s)	102, 140, 153, 182, 279
Sau3AI	GATC	2 cut(s)	259, 383
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	6 cut(s)	141, 223, 256, 369, 391, 438
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	175, 410, 463
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	70, 423
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	243, 338, 483
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	3 cut(s)	175, 410, 463
TscAI	CASTG	3 cut(s)	57, 75, 111
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	5 cut(s)	101, 139, 152, 181, 278
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	17, 102, 178, 513
TspRI	CASTG	3 cut(s)	57, 75, 111
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	2 cut(s)	175, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.