Rh2AG523500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
75066695 .. 75071855
5161 bp
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UTR
Exon/CDS
Intron
Rh2AG523500.1

Sequence Viewer

Length: 369 bp
ATGGCGTCATCTCTTCTTATGAAACCAACAGTCAGCAGTAATAGAGATGAGGTGTATGTTGCAGCAGTGCCTCTAAGAGCCGCAAAAGGACCTGCCCAGCTCCTCACCTCTACTGCTTACTCTCTCAATCTCTGGGATTTGCAGCACTTCATGGTCATCATTAAGCCCTCCTCACCACCACCACATTCTCAGTCGAGGGATCTTTGGCTGTATAGCAAAGTAAGCAAACTCAACCCCATCTCAAGTTCTCAACCTAGAAAAATGGATTCAGAGAAAATTGATGTAAACACGATGTTGAAGATGAGGTCCTTCCAATCTTTCCCTTTATTTTCTCATGTACCAGATGAGGTTGCAATGGATGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

9.0

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 62, 142
AspS9I GGNCC 2 cut(s) 89, 306
AsuHPI GGTGA 2 cut(s) 97, 165
AvaII GGWCC 2 cut(s) 89, 306
BbvI GCAGC 2 cut(s) 74, 154
BccI CCATC 1 cut(s) 245
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 3 cut(s) 63, 81, 143
BlsI GCNGC 3 cut(s) 64, 82, 144
Bme18I GGWCC 2 cut(s) 89, 306
BmgT120I GGNCC 2 cut(s) 89, 306
BpuEI CTTGAG 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 360
BseGI GGATG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 92, 160
BseXI GCAGC 2 cut(s) 74, 154
BseYI CCCAGC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 360
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 74, 189
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 74, 154
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 89, 306
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 151, 335
CviJI RGCY 4 cut(s) 80, 100, 166, 208
CviKI_1 RGCY 4 cut(s) 80, 100, 166, 208
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 74, 189
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 89, 306
EcoO109I RGGNCCY 2 cut(s) 89, 306
FaeI CATG 2 cut(s) 154, 338
FaiI YATR 5 cut(s) 20, 57, 152, 213, 336
FatI CATG 2 cut(s) 150, 334
Fnu4HI GCNGC 3 cut(s) 63, 81, 143
Fsp4HI GCNGC 3 cut(s) 63, 81, 143
FspBI CTAG 1 cut(s) 255
GluI GCNGC 3 cut(s) 63, 81, 143
GsaI CCCAGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 154, 338
HinfI GANTC 1 cut(s) 266
HphI GGTGA 2 cut(s) 97, 165
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 62, 142, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 74, 189
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 154, 338
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 105, 110, 118, 354
Lsp1109I GCAGC 2 cut(s) 74, 154
MaeI CTAG 1 cut(s) 255
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 5, 310
MflI RGATCY 1 cut(s) 199
MluCI AATT 1 cut(s) 276
MnlI CCTC 9 cut(s) 43, 81, 113, 118, 178, 181, 189, 297, 340
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 154, 338
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 64, 82, 144
PpuMI RGGWCCY 2 cut(s) 89, 306
Psp5II RGGWCCY 2 cut(s) 89, 306
PspFI CCCAGC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 89, 306
PspPPI RGGWCCY 2 cut(s) 89, 306
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 63, 81, 143
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 89, 306
SetI ASST 7 cut(s) 54, 94, 102, 110, 256, 308, 351
SinI GGWCC 2 cut(s) 89, 306
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 1 cut(s) 276
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 276
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 62, 142
TspDTI ATGAA 2 cut(s) 35, 139
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 89, 306
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.