Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015314

Physical Location & Seq

Genomic Coordinates Forward (+)

3045523 .. 3046904

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAAGAGACAAACACCTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCATGTCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0009987 GO:0016043 GO:0021537 GO:0021549 GO:0022037 GO:0030029 GO:0030036 GO:0030900 GO:0030902 GO:0032501 GO:0032502 GO:0042113 GO:0044183 GO:0044424 GO:0044464 GO:0045321 GO:0046649 GO:0048513 GO:0048731 GO:0048856 GO:0060322 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

4.94

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	12 - 114	1.2e-17	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07340 AT2G07340
fragaria_vesca	FvH4_4g05950
malus_domestica	MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica	Prupe.1G063000_v2.0.a1
pyrus_communis	pycom13g20440 pycom16g19840
rosa_chinensis	RchiOBHm_Chr4g0397141
rosa_laevigata	RLG00000009443
rosa_multiflora	Rmu_sc0002312.1_g000044
rosa_roxburghii	Rroxscaffold_5G00342130
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077600 Rh4BG073100
rosa_wichuraiana	Rw4G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	41, 56
AluBI	AGCT	7 cut(s)	23, 44, 70, 122, 142, 257, 334
AluI	AGCT	7 cut(s)	23, 44, 70, 122, 142, 257, 334
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	23, 257, 340
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	10, 244, 352
BceAI	ACGGC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	45, 200
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	24, 258, 341
BlsI	GCNGC	3 cut(s)	25, 259, 342
Bme1390I	CCNGG	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	81
BmtI	GCTAGC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	227, 346
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	132, 282
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	2 cut(s)	149, 354
BseDI	CCNNGG	2 cut(s)	132, 282
BseGI	GGATG	1 cut(s)	278
BseMI	GCAATG	2 cut(s)	149, 354
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	10, 244, 352
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	48
BsrDI	GCAATG	2 cut(s)	149, 354
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	132, 282
BssT1I	CCWWGG	2 cut(s)	132, 282
Bst4CI	ACNGT	2 cut(s)	214, 251
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	46, 120
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 263, 340
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	10, 244, 352
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	60, 219, 256
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	46, 120
CfoI	GCGC	1 cut(s)	96
CviAII	CATG	2 cut(s)	49, 376
CviJI	RGCY	9 cut(s)	23, 44, 70, 122, 142, 148, 205, 257, 334
CviKI_1	RGCY	9 cut(s)	23, 44, 70, 122, 142, 148, 205, 257, 334
DdeI	CTNAG	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	132, 282
Eco24I	GRGCYC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	132, 282
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	132, 282
FaeI	CATG	2 cut(s)	52, 379
FaiI	YATR	5 cut(s)	32, 50, 371, 377, 383
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	2 cut(s)	48, 375
Fnu4HI	GCNGC	3 cut(s)	24, 258, 341
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	24, 258, 341
FspBI	CTAG	2 cut(s)	45, 200
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	24, 258, 341
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	52, 379
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	37, 85
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	214, 251
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	82, 340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 263, 340
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	52, 379
HspAI	GCGC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	139, 331
LpnPI	CCDG	7 cut(s)	31, 48, 62, 168, 203, 287, 363
Lsp1109I	GCAGC	3 cut(s)	10, 244, 352
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	45, 200
MaeII	ACGT	1 cut(s)	191
MboII	GAAGA	2 cut(s)	170, 198
MhlI	GDGCHC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	97, 130, 138, 214, 304, 321
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 263, 340
NciI	CCSGG	1 cut(s)	351
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	52, 379
NsbI	TGCGCA	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	37, 85
PkrI	GCNGC	3 cut(s)	25, 259, 342
Psp1406I	AACGTT	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	3 cut(s)	24, 258, 341
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	242, 325
SmoI	CTYRAG	2 cut(s)	242, 325
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	45, 200
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	132, 282
TaaI	ACNGT	2 cut(s)	214, 251
TaiI	ACGT	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	37, 85
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	3 cut(s)	67, 219, 256
TseI	GCWGC	3 cut(s)	23, 257, 340
TspRI	CASTG	3 cut(s)	67, 219, 256
XbaI	TCTAGA	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 289
XspI	CTAG	2 cut(s)	45, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.