Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015314

Physical Location & Seq

Genomic Coordinates Reverse (-)

10882755 .. 10887535

Gene Structure 4781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTGGCCGGAATTGATAGTTTCGACGAGATGGCAGATTGCGGCGCGCAACCACTTCCGGCGAGTTGTGGGGCCGTCCACGGCCCTACCCGTGTGATGAAACTTCACAAAGTTAGACAAGGGAGTGAGGTGAAGAGAAACAGAAAAGCGGCGTGGCCAACGGTGGTTGGAAGAGGGAGAAATCGCCGCCGAAAGTCACTGGGCAAAATTGGGACTAGAACTTCTTCCCACACAGCACAGTTTGCAACTACTCGATTGAAAATGGCCGAGGAAGCCAACAGAGCTGCGTTCATGGAGATTCAAGGGCGCATGATCGAGCTCACCGCCAAACTCAAGCAGGTGCAGAACCAGATGCGAAACAAAGAAGGAGAAAAGAAGCGTGCTTTTCTAACCCTAGAGGAAATTCGCCCTTTGCCTGATGACGCAAATACTTACAAATCTATAGGAAGAACGTTTGTTTTAGAGCCCAAGTCAGTGTTGGTGAATGAACAGGAGCAGAAGCTCAAGGATAGTGAGACCGCAATTTCCTCACTACAGACCTCAAAGGAATACATTGAGAAACAGATTGGAGAGGTGGAGAGCAACTTGAGGGAGCTATTGAACCAGGATCCAAGTCTTGCTCGTCAGATAATGTCCATGACTGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0009987 GO:0016043 GO:0021537 GO:0021549 GO:0022037 GO:0030029 GO:0030036 GO:0030900 GO:0030902 GO:0032501 GO:0032502 GO:0042113 GO:0044183 GO:0044424 GO:0044464 GO:0045321 GO:0046649 GO:0048513 GO:0048731 GO:0048856 GO:0060322 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

216

Amino Acids

24.29

Weight (kDa)

9.84

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	99 - 202	5.4e-21	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07340 AT2G07340
fragaria_vesca	FvH4_4g05950
malus_domestica	MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica	Prupe.1G063000_v2.0.a1
pyrus_communis	pycom13g20440 pycom16g19840
rosa_chinensis	RchiOBHm_Chr4g0397141
rosa_laevigata	RLG00000009443
rosa_multiflora	Rmu_sc0002312.1_g000044
rosa_roxburghii	Rroxscaffold_5G00342130
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077600 Rh4BG073100
rosa_wichuraiana	Rw4G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
AccII	CGCG	1 cut(s)	47
AciI	CCGC	5 cut(s)	42, 149, 187, 324, 519
AclI	AACGTT	1 cut(s)	452
AclWI	GGATC	2 cut(s)	602, 615
AcoI	YGGCCR	3 cut(s)	6, 155, 264
AcsI	RAATTY	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	259, 302, 601
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	4 cut(s)	284, 319, 502, 595
AluI	AGCT	4 cut(s)	284, 319, 502, 595
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	602, 615
AoxI	GGCC	5 cut(s)	6, 72, 82, 155, 264
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	223
AspLEI	GCGC	3 cut(s)	47, 49, 309
AspS9I	GGNCC	2 cut(s)	72, 83
AsuHPI	GGTGA	3 cut(s)	142, 313, 493
BalI	TGGCCA	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	321, 468
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	59, 97
BciT130I	CCWGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	216, 395
BfmI	CTRYAG	2 cut(s)	441, 533
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	4 cut(s)	43, 150, 187, 285
BlsI	GCNGC	4 cut(s)	44, 151, 188, 286
Bme1390I	CCNGG	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	72, 83
BmiI	GGNNCC	2 cut(s)	73, 609
BmrFI	CCNGG	1 cut(s)	605
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	317, 488, 607
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	79, 267
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	79, 267
BseNI	ACTGG	1 cut(s)	204
BsePI	GCGCGC	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	5 cut(s)	8, 74, 84, 157, 266
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	9, 59
BslFI	GGGAC	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	5 cut(s)	8, 74, 84, 157, 266
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	321, 468
Bsp143I	GATC	2 cut(s)	312, 607
BspACI	CCGC	5 cut(s)	42, 149, 187, 324, 519
BspANI	GGCC	5 cut(s)	8, 74, 84, 157, 266
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	73, 609
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	602, 615
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	79, 267
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	2 cut(s)	312, 607
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	163, 240, 643
Bst6I	CTCTTC	2 cut(s)	128, 166
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	47, 381
BstDSI	CCRYGG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	3 cut(s)	47, 49, 309
BstKTI	GATC	2 cut(s)	315, 610
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	2 cut(s)	312, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 272, 281
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	2 cut(s)	441, 533
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	5 cut(s)	8, 74, 84, 157, 266
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	197, 480
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	47, 381
CfoI	GCGC	3 cut(s)	47, 49, 309
Cfr13I	GGNCC	2 cut(s)	72, 83
CseI	GACGC	1 cut(s)	431
CviAII	CATG	3 cut(s)	292, 310, 637
DpnI	GATC	2 cut(s)	314, 609
DpnII	GATC	2 cut(s)	312, 607
EaeI	YGGCCR	3 cut(s)	6, 155, 264
Eam1104I	CTCTTC	2 cut(s)	128, 166
EarI	CTCTTC	2 cut(s)	128, 166
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	321, 468
Eco31I	GGTCTC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	603
EcoT38I	GRGCYC	2 cut(s)	321, 468
FaeI	CATG	3 cut(s)	295, 313, 640
FaiI	YATR	4 cut(s)	293, 311, 443, 638
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	291, 309, 636
Fnu4HI	GCNGC	4 cut(s)	43, 150, 187, 285
FriOI	GRGCYC	2 cut(s)	321, 468
Fsp4HI	GCNGC	4 cut(s)	43, 150, 187, 285
FspBI	CTAG	2 cut(s)	216, 395
GlaI	GCGC	3 cut(s)	46, 48, 308
GluI	GCNGC	4 cut(s)	43, 150, 187, 285
HaeIII	GGCC	5 cut(s)	8, 74, 84, 157, 266
HapII	CCGG	2 cut(s)	9, 59
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	47, 49, 309
Hin1II	CATG	3 cut(s)	295, 313, 640
Hin6I	GCGC	3 cut(s)	45, 47, 307
HinP1I	GCGC	3 cut(s)	45, 47, 307
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	2 cut(s)	9, 59
HphI	GGTGA	3 cut(s)	142, 313, 493
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	627
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	3 cut(s)	163, 240, 643
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	2 cut(s)	245, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 272, 281
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	295, 313, 640
HspAI	GCGC	3 cut(s)	45, 47, 307
Kzo9I	GATC	2 cut(s)	312, 607
LmnI	GCTCC	2 cut(s)	493, 592
LpnPI	CCDG	9 cut(s)	22, 72, 185, 323, 362, 429, 476, 590, 617
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	216, 395
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	314, 609
MboI	GATC	2 cut(s)	312, 607
MboII	GAAGA	4 cut(s)	145, 183, 216, 459
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	321, 468
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	4 cut(s)	12, 207, 402, 522
MluNI	TGGCCA	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	8 cut(s)	121, 167, 262, 391, 538, 550, 565, 582
Mox20I	TGGCCA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	157
Msp20I	TGGCCA	1 cut(s)	157
MspI	CCGG	2 cut(s)	9, 59
MspR9I	CCNGG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	242, 272, 281
NdeII	GATC	2 cut(s)	312, 607
NlaIII	CATG	3 cut(s)	295, 313, 640
NlaIV	GGNNCC	2 cut(s)	73, 609
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	328
PauI	GCGCGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	44, 151, 188, 286
Psp124BI	GAGCTC	1 cut(s)	321
Psp1406I	AACGTT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	73, 609
PspPI	GGNCC	2 cut(s)	72, 83
PsuI	RGATCY	1 cut(s)	607
PteI	GCGCGC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	321
SatI	GCNGC	4 cut(s)	43, 150, 187, 285
Sau3AI	GATC	2 cut(s)	312, 607
Sau96I	GGNCC	2 cut(s)	72, 83
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	2 cut(s)	321, 468
SetI	ASST	9 cut(s)	132, 286, 321, 342, 455, 504, 542, 576, 597
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	441, 533
SmlI	CTYRAG	3 cut(s)	332, 503, 586
SmoI	CTYRAG	3 cut(s)	332, 503, 586
Sse9I	AATT	4 cut(s)	12, 207, 402, 522
SsiI	CCGC	5 cut(s)	42, 149, 187, 324, 519
SspMI	CTAG	2 cut(s)	216, 395
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	3 cut(s)	163, 240, 643
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	3 cut(s)	24, 253, 315
TasI	AATT	4 cut(s)	12, 207, 402, 522
TauI	GCSGC	3 cut(s)	45, 152, 189
TfiI	GAWTC	1 cut(s)	298
TscAI	CASTG	2 cut(s)	204, 480
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	3 cut(s)	113, 280, 501
TspRI	CASTG	2 cut(s)	204, 480
XapI	RAATTY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	2 cut(s)	216, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.