FvH4_4g05950

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015314
Physical Location & Seq
Reverse (-)
5363851 .. 5366522
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05950.t1

Sequence Viewer

Length: 390 bp
ATGGCCGACGAAGCCAACAGAGCTGCCTTCATGGAGATTCAAGGTCGCATGATCGAGCTCACGGCCAAACTCAAGCAGGTGCAGAACCAGATGCGAAACAAAGAAGGAGAAAAGAAGCGTGCTTTTCTAACCCTAGAGGAGATTCGCCCTTTGCCTGAAGACGCTAATACTTACAAATCTATAGGAAGAACGTTTGTTTTAGAGCCAAAGTCAGTGTTGGTGAGTGAACAGGAACAGAAGCTCCAGGATAGTGAGAGTGCAATTGCCTTGCTACAGACCTCAAAGGAATACATTGAGAAACAGATTGGAGAGGTGGAGACCAACTTGAGGGAGCTATTGAACCAGGATCCAGGTCTTGCTCGTCAGATAATGTCCATGACTGTTATGTAA

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

5.17

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 12 - 115 1.6e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07340 AT2G07340
fragaria_vesca FvH4_4g05950
malus_domestica MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica Prupe.1G063000_v2.0.a1
pyrus_communis pycom13g20440 pycom16g19840
rosa_chinensis RchiOBHm_Chr4g0397141
rosa_laevigata RLG00000009443
rosa_multiflora Rmu_sc0002312.1_g000044
rosa_roxburghii Rroxscaffold_5G00342130
rosa_rugosa Rorug03G0344600
rosa_samantha Rh4AG077600 Rh4BG073100
rosa_wichuraiana Rw4G006270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AclI AACGTT 1 cut(s) 191
AclWI GGATC 2 cut(s) 341, 354
AcoI YGGCCR 2 cut(s) 3, 63
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 2 cut(s) 41, 340
AjnI CCWGG 3 cut(s) 243, 342, 349
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 4 cut(s) 23, 58, 241, 334
AluI AGCT 4 cut(s) 23, 58, 241, 334
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 341, 354
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 3 cut(s) 245, 344, 351
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 180, 272
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 3 cut(s) 245, 344, 351
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 3 cut(s) 245, 344, 351
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 56, 346
BsaI GGTCTC 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 327
BseBI CCWGG 3 cut(s) 245, 344, 351
BseLI CCNNNNNNNGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 2 cut(s) 5, 65
BsiHKAI GWGCWC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 5, 65
Bso31I GGTCTC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 51, 346
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 2 cut(s) 341, 354
BspTNI GGTCTC 1 cut(s) 311
BssMI GATC 2 cut(s) 51, 346
Bst2UI CCWGG 3 cut(s) 245, 344, 351
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 54, 349
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 51, 346
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 3 cut(s) 245, 344, 351
BstSCI CCNGG 3 cut(s) 243, 342, 349
BstSFI CTRYAG 2 cut(s) 180, 272
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 5, 65
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 120
CseI GACGC 1 cut(s) 170
CviAII CATG 3 cut(s) 31, 49, 376
CviJI RGCY 8 cut(s) 5, 14, 23, 58, 65, 205, 241, 334
CviKI_1 RGCY 8 cut(s) 5, 14, 23, 58, 65, 205, 241, 334
DpnI GATC 2 cut(s) 53, 348
DpnII GATC 2 cut(s) 51, 346
EaeI YGGCCR 2 cut(s) 3, 63
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 58
EcoRII CCWGG 3 cut(s) 243, 342, 349
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 3 cut(s) 34, 52, 379
FaiI YATR 5 cut(s) 32, 50, 182, 377, 386
FatI CATG 3 cut(s) 30, 48, 375
Fnu4HI GCNGC 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 134
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 5, 65
HgaI GACGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 34, 52, 379
HinfI GANTC 2 cut(s) 37, 142
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 366
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 37, 98
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 82, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 3 cut(s) 34, 52, 379
Kzo9I GATC 2 cut(s) 51, 346
LmnI GCTCC 2 cut(s) 246, 331
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 191
MalI GATC 2 cut(s) 53, 348
MboI GATC 2 cut(s) 51, 346
MboII GAAGA 2 cut(s) 170, 198
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 261
MnlI CCTC 4 cut(s) 130, 289, 304, 321
MspR9I CCNGG 3 cut(s) 245, 344, 351
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 3 cut(s) 245, 344, 351
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 51, 346
NlaIII CATG 3 cut(s) 34, 52, 379
NlaIV GGNNCC 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 37, 142
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 243, 342, 349
PspGI CCWGG 3 cut(s) 243, 342, 349
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 346
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 51, 346
ScrFI CCNGG 3 cut(s) 245, 344, 351
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 180, 272
SmlI CTYRAG 2 cut(s) 71, 325
SmoI CTYRAG 2 cut(s) 71, 325
Sse9I AATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 243, 342, 349
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 261
TfiI GAWTC 2 cut(s) 37, 142
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 219
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.