MD13G1231800.v1.1

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015314
Physical Location & Seq
Reverse (-)
23025945 .. 23027615
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1231800.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGCCGACGAAGCCAACCGAGCTGCGTTCATGGAGATTCAAGGCCGCATGATTGAGCTTACTGCGAAATTGAAGCAGGTGCAGACGCAGATGCGGAACAAAGAAGGAGAAAAGAAGCGTGCTTTTCTGACCCTGGAGGAGCTGCGGCCTTTATCTGATGATTCAAATACTTACAAATCTATAGGGAGAACGTTTGTTTTAGAGCCGAAGTCGGTGTTGATGAATGAACAGGAACAAAAGCTCAAGGATAGTGAGAGTGCAATAGCCTCGCTCCAGACTTCAAAGGAATATATCGAGAAACAGGTTGCAGAGGTGGAGAGCAACTTGAGGGAGCTATTGAACCAAGATCCCGGTCTTGCTCGCCAGATAATGTCCATGACTGTAATGTAA

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

5.35

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 12 - 115 1.1e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07340 AT2G07340
fragaria_vesca FvH4_4g05950
malus_domestica MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica Prupe.1G063000_v2.0.a1
pyrus_communis pycom13g20440 pycom16g19840
rosa_chinensis RchiOBHm_Chr4g0397141
rosa_laevigata RLG00000009443
rosa_multiflora Rmu_sc0002312.1_g000044
rosa_roxburghii Rroxscaffold_5G00342130
rosa_rugosa Rorug03G0344600
rosa_samantha Rh4AG077600 Rh4BG073100
rosa_wichuraiana Rw4G006270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 3 cut(s) 46, 94, 145
AclI AACGTT 1 cut(s) 191
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 5 cut(s) 41, 73, 165, 282, 340
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 5 cut(s) 23, 58, 142, 241, 334
AluI AGCT 5 cut(s) 23, 58, 142, 241, 334
AlwI GGATC 1 cut(s) 341
AoxI GGCC 3 cut(s) 3, 43, 146
ApeKI GCWGC 2 cut(s) 23, 142
AsuC2I CCSGG 1 cut(s) 351
BbvI GCAGC 2 cut(s) 10, 129
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 4 cut(s) 24, 46, 143, 146
BlsI GCNGC 4 cut(s) 25, 47, 144, 147
Bme1390I CCNGG 2 cut(s) 134, 351
BmrFI CCNGG 2 cut(s) 134, 351
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 2 cut(s) 155, 257
BpuEI CTTGAG 2 cut(s) 227, 346
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 10, 129
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 5, 45, 148
BsiSI CCGG 1 cut(s) 351
BsnI GGCC 3 cut(s) 5, 45, 148
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 3 cut(s) 46, 94, 145
BspANI GGCC 3 cut(s) 5, 45, 148
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 120, 361
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 132, 349
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 10, 129
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 3 cut(s) 5, 45, 148
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 120, 361
CseI GACGC 1 cut(s) 94
CviAII CATG 3 cut(s) 31, 49, 376
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 34, 52, 379
FaiI YATR 5 cut(s) 32, 50, 182, 291, 377
FatI CATG 3 cut(s) 30, 48, 375
Fnu4HI GCNGC 4 cut(s) 24, 46, 143, 146
Fsp4HI GCNGC 4 cut(s) 24, 46, 143, 146
GluI GCNGC 4 cut(s) 24, 46, 143, 146
GsuI CTGGAG 2 cut(s) 155, 257
HaeIII GGCC 3 cut(s) 5, 45, 148
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 34, 52, 379
HinfI GANTC 2 cut(s) 37, 161
HpaII CCGG 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 129, 157
Hpy188III TCNNGA 2 cut(s) 274, 295
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 82, 260, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 3 cut(s) 34, 52, 379
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 3 cut(s) 139, 276, 331
LpnPI CCDG 8 cut(s) 62, 119, 146, 215, 287, 287, 364, 377
Lsp1109I GCAGC 2 cut(s) 10, 129
LweI GCATC 1 cut(s) 81
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MflI RGATCY 1 cut(s) 346
MluCI AATT 1 cut(s) 68
MnlI CCTC 4 cut(s) 130, 277, 304, 321
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 134, 351
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 34, 52, 379
PaqCI CACCTGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 37, 161
PkrI GCNGC 4 cut(s) 25, 47, 144, 147
Psp1406I AACGTT 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 346
SatI GCNGC 4 cut(s) 24, 46, 143, 146
Sau3AI GATC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 134, 351
SetI ASST 9 cut(s) 25, 60, 81, 144, 194, 243, 306, 315, 336
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 242, 325
SmoI CTYRAG 2 cut(s) 242, 325
Sse9I AATT 1 cut(s) 68
SsiI CCGC 3 cut(s) 46, 94, 145
StyD4I CCNGG 2 cut(s) 132, 349
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 68
TauI GCSGC 2 cut(s) 48, 148
TfiI GAWTC 2 cut(s) 37, 161
TseI GCWGC 2 cut(s) 23, 142
TspDTI ATGAA 3 cut(s) 19, 236, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.