Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015314

Physical Location & Seq

Genomic Coordinates Reverse (-)

16555864 .. 16558254

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCGACGAAGCCAACCGAGCCGCGTTCATGGAGATTCAAGGCCGCATGATTGAGCTTACTGCGAAATTGAAGCAGGTCCAGACGCAGATGCGGAACAAGGAAGGAGAAAAGAAGCGTGCTTTTCTGACCCTGGAGGAGCTGCGGCCTTTATCTGATGATTCAAATACTTACAAATCTATAGAGCCGAAGTCGGTGTTAGTGAATGAACACGAACAAAAGCTCAAGGATAGTGAGAGTGCAATAGCCTCGCTCCAGACTTCAAAGGAATATATCGAGAAACAGGTTGCAGAGGTGGAGAGCAACTTGAGGGAGCTATTGAACCAAGATCCCGGCCTTGCTCGCCAGATAATGTCCATGACTGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0009987 GO:0016043 GO:0021537 GO:0021549 GO:0022037 GO:0030029 GO:0030036 GO:0030900 GO:0030902 GO:0032501 GO:0032502 GO:0042113 GO:0044183 GO:0044424 GO:0044464 GO:0045321 GO:0046649 GO:0048513 GO:0048731 GO:0048856 GO:0060322 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

124

Amino Acids

14.07

Weight (kDa)

5.31

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07340 AT2G07340
fragaria_vesca	FvH4_4g05950
malus_domestica	MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica	Prupe.1G063000_v2.0.a1
pyrus_communis	pycom13g20440 pycom16g19840
rosa_chinensis	RchiOBHm_Chr4g0397141
rosa_laevigata	RLG00000009443
rosa_multiflora	Rmu_sc0002312.1_g000044
rosa_roxburghii	Rroxscaffold_5G00342130
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077600 Rh4BG073100
rosa_wichuraiana	Rw4G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 46, 94, 145
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	5 cut(s)	41, 73, 165, 264, 322
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	58, 142, 223, 316
AluI	AGCT	4 cut(s)	58, 142, 223, 316
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	4 cut(s)	3, 43, 146, 334
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	24, 46, 143, 146
BlsI	GCNGC	4 cut(s)	25, 47, 144, 147
Bme1390I	CCNGG	2 cut(s)	134, 333
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	134, 333
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	155, 239
BpuEI	CTTGAG	2 cut(s)	209, 328
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	5, 45, 148, 336
BsiSI	CCGG	1 cut(s)	333
BsnI	GGCC	4 cut(s)	5, 45, 148, 336
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	24, 46, 94, 145
BspANI	GGCC	4 cut(s)	5, 45, 148, 336
BspFNI	CGCG	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	120, 343
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 342
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 331
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	4 cut(s)	5, 45, 148, 336
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	120, 343
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	94
CviAII	CATG	3 cut(s)	31, 49, 358
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	34, 52, 361
FaiI	YATR	5 cut(s)	32, 50, 182, 273, 359
FatI	CATG	3 cut(s)	30, 48, 357
Fnu4HI	GCNGC	4 cut(s)	24, 46, 143, 146
Fsp4HI	GCNGC	4 cut(s)	24, 46, 143, 146
GluI	GCNGC	4 cut(s)	24, 46, 143, 146
GsuI	CTGGAG	2 cut(s)	155, 239
HaeIII	GGCC	4 cut(s)	5, 45, 148, 336
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	34, 52, 361
HinfI	GANTC	2 cut(s)	37, 161
HpaII	CCGG	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	129, 157
Hpy188III	TCNNGA	3 cut(s)	82, 256, 277
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	242, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 342
Hsp92II	CATG	3 cut(s)	34, 52, 361
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	139, 258, 313
LpnPI	CCDG	8 cut(s)	62, 95, 119, 146, 269, 269, 346, 359
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	81
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	4 cut(s)	130, 259, 286, 303
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	134, 333
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 342
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	34, 52, 361
PfeI	GAWTC	2 cut(s)	37, 161
PkrI	GCNGC	4 cut(s)	25, 47, 144, 147
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	328
SatI	GCNGC	4 cut(s)	24, 46, 143, 146
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	134, 333
SetI	ASST	7 cut(s)	60, 81, 144, 225, 288, 297, 318
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	224, 307
SmoI	CTYRAG	2 cut(s)	224, 307
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	4 cut(s)	24, 46, 94, 145
StyD4I	CCNGG	2 cut(s)	132, 331
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	68
TauI	GCSGC	3 cut(s)	26, 48, 148
TfiI	GAWTC	2 cut(s)	37, 161
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	19, 222
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.