Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015314

Physical Location & Seq

Genomic Coordinates Reverse (-)

15783041 .. 15785476

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCGACGAAGCCAACAGAGCTGCGTTCATGGAGATTCAAGGTCGCATGATCGAGCTCACCGCCAAACTCAAGCAGGTGCAGAACCAGATGCGAAACAAAGAAGGAGAAAAGAAGCGTGCTTTTCTAACCCTAGAGGAAATTCGCCCTTTGCCTGATGACGCCAATACTTACAAATCCATAGGAAGAACGTTTGTTTTAGAGCCCAAGTCAGTGTTGGTGAATGAACAGGAGCAGAAGCTCAAGGATAGTGAGAGCGCAATTGCCTCACTACAGACCTCAAAGGAATACATTGAGAAGCAGATTGGAGAGGTGGAGGGCAACTTGAGGGAGCTATTGAACCAGGATCCAAGTCTTGCTCGTCAGATAATGTCCATGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0009987 GO:0016043 GO:0021537 GO:0021549 GO:0022037 GO:0030029 GO:0030036 GO:0030900 GO:0030902 GO:0032501 GO:0032502 GO:0042113 GO:0044183 GO:0044424 GO:0044464 GO:0045321 GO:0046649 GO:0048513 GO:0048731 GO:0048856 GO:0060322 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

127

Amino Acids

14.51

Weight (kDa)

5.35

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	12 - 115	1.5e-21	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07340 AT2G07340
fragaria_vesca	FvH4_4g05950
malus_domestica	MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica	Prupe.1G063000_v2.0.a1
pyrus_communis	pycom13g20440 pycom16g19840
rosa_chinensis	RchiOBHm_Chr4g0397141
rosa_laevigata	RLG00000009443
rosa_multiflora	Rmu_sc0002312.1_g000044
rosa_roxburghii	Rroxscaffold_5G00342130
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077600 Rh4BG073100
rosa_wichuraiana	Rw4G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AciI	CCGC	1 cut(s)	63
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	2 cut(s)	341, 354
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	41, 340
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	23, 58, 241, 334
AluI	AGCT	4 cut(s)	23, 58, 241, 334
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	341, 354
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	52, 232
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	60, 207
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	3 cut(s)	56, 227, 346
BsaHI	GRCGYC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	60, 207
Bsp143I	GATC	2 cut(s)	51, 346
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	341, 354
BssMI	GATC	2 cut(s)	51, 346
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	54, 349
BstMBI	GATC	2 cut(s)	51, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	260
CseI	GACGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	31, 49, 376
CviJI	RGCY	7 cut(s)	5, 14, 23, 58, 205, 241, 334
CviKI_1	RGCY	7 cut(s)	5, 14, 23, 58, 205, 241, 334
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	53, 348
DpnII	GATC	2 cut(s)	51, 346
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	60, 207
Eco53kI	GAGCTC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	2 cut(s)	60, 207
FaeI	CATG	3 cut(s)	34, 52, 379
FaiI	YATR	4 cut(s)	32, 50, 182, 377
FatI	CATG	3 cut(s)	30, 48, 375
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	2 cut(s)	60, 207
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	34, 52, 379
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	52, 232
Hpy188I	TCNGA	1 cut(s)	366
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	34, 52, 379
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	51, 346
LmnI	GCTCC	2 cut(s)	232, 331
LpnPI	CCDG	6 cut(s)	62, 101, 168, 215, 329, 356
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	53, 348
MboI	GATC	2 cut(s)	51, 346
MboII	GAAGA	1 cut(s)	198
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	60, 207
MluCI	AATT	2 cut(s)	141, 261
MnlI	CCTC	6 cut(s)	130, 277, 289, 304, 310, 321
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NdeII	GATC	2 cut(s)	51, 346
NlaIII	CATG	3 cut(s)	34, 52, 379
NlaIV	GGNNCC	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	51, 346
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	60, 207
SetI	ASST	9 cut(s)	25, 46, 60, 81, 194, 243, 281, 315, 336
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	272
SmlI	CTYRAG	3 cut(s)	71, 242, 325
SmoI	CTYRAG	3 cut(s)	71, 242, 325
Sse9I	AATT	2 cut(s)	141, 261
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	141, 261
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	19, 240
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.