Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009821

Physical Location & Seq

Genomic Coordinates Forward (+)

41594907 .. 41601204

Gene Structure 6298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGAACGCTTAGTTTGAGCAGCGTGGATTTTAATTTGAGTGTGAAATACCCAGAAATTCCAAGATTCCAATGGAGCAAGAGAAACAAGAATTCATGCTTGTTGTGCGGAGGAAGCATGAAGAGGCTGAGATGGAGATGTTATACTTCTTCTAACGACGATGAGGGAAAGACTAGTAGTAGCAACAAGTCAAAAGACGAGGCTGCCGAAGATACACGCAGCAACGACCCTGCTTCCCTCCCTTCCACTTCCAGGCCACCACCTACATCACCACTTGGAACCGCTTACAATAATTTCCAAGTCGACTCCTTTAAGCTGATGGAACTCCTTGGACCTGAGAAGGTTGATCCTGCTGATGTAAAGCTCATTAAAGAAAAGCTTTTTGGCTATTCTACTTTTTGGGTGACTAAAGAGGAGCCATTTGGAGACCTTGGGGAGGGCATTCTTTTCCTTGGTAATTTGAGGGGAAAGAGAGAAGACGTATTTGCCAAATTCCAGACTCTGCTAGCTGAGGTTACAGGTAATAAGTACAACCTTTTTATGGTGGAGGAACCCAATTCAGAAGATCTAGATCCGCGTGGTGGGCCTCGTGTTAGCTTTGGTCTGCTCCGGAAAGAGGTCTCGGAACCAGGCCCAACAACACTTTGGCAATATGTAATTGCGCTCTTGTTATTTCTTCTAACAATTGGATCATCTGTAGAGTTAGGAATTGCATCTCAGATAAATAGACTTCCACCAGAGGTTGTCAAGTATTTTACAGATCCAAATGCTATTGACCCACCAGAAATGGAGCTGCTATTCCCGTTTGTGGAGTCAGCTTTGCCCTTAGCCTATGGTGTTCTTGGGGTTTTGCTATTTCATGAAGTTGGGCATCTTCTGGCTGCTTTTCCAAAGAAAGTAAAACTTAGCATTCCTTACTTCATTCCTAATATTACACTTGGCAGCTTTGGCGCAATCACTCAGTTTAAATCCATTCTTCCCGATCGGAGCACACAAGTCGACATTTCACTTGCAGGCCCGTTTGCTGGTTTTGCACTGTCATTGTCAATGTTTAGTGTAGGTCTGCTGCTCTCATCTAATCCCAATGCCACAGAAGAGCTGGTGCAGGTTCCAAGCATGCTGTTTCAAGGTTCTTTGCTTCTAGGACTCATCAGTAGAGCTACTCTTGGTTATGCATCAATGCATGCTGCGACTGTTGCAATTCATCCTCTTATGATTGCTGGCTGGTGTGGGTTGACAACTACGGCTTTTAATATGCTTCCAGTGGGCTGTCTTGATGGTGGAAGAGCTGTGCAGGGTGCTTTTGGAAAAAATGCACTGATTGCGTTTGGTTTGACAACTTACACATTTCTCGGATTGGGAGTGCTCGGTGGACCTTTGTCACTTCCATGGGGACTCTACGTGCTCATATGCCAGGTTTGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009909 GO:0009911 GO:0009965 GO:0010016 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0099402 GO:1905392 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

475

Amino Acids

51.63

Weight (kDa)

5.94

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	277 - 436	3.3e-19	Peptidase family M50

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08370 AT5G08370
fragaria_vesca	FvH4_4g05940 FvH4_4g05940 FvH4_4g05940
malus_domestica	MD05G1321500.v1.1 MD05G1321600.v1.1 MD05G1321700.v1.1
prunus_persica	Prupe.4G041000_v2.0.a1 Prupe.4G041000_v2.0.a1
pyrus_communis	pycom05g29600 pycom05g29610
rosa_chinensis	RchiOBHm_Chr4g0397131
rosa_laevigata	RLG00000009444
rosa_multiflora	Rmu_sc0002312.1_g000033
rosa_roxburghii	Rroxscaffold_5G00342100
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077500 Rh4CG082700 Rh4DG070600
rosa_wichuraiana	Rw4G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1096
AccI	GTMKAC	2 cut(s)	303, 999
AccII	CGCG	1 cut(s)	577
AccIII	TCCGGA	1 cut(s)	609
AciI	CCGC	3 cut(s)	108, 282, 575
AclWI	GGATC	4 cut(s)	341, 566, 697, 755
AcsI	RAATTY	3 cut(s)	57, 91, 491
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	7 cut(s)	252, 436, 541, 581, 616, 808, 1025
AgsI	TTSAA	1 cut(s)	1127
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	251, 628, 1413
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
Alw21I	GWGCWC	3 cut(s)	992, 1368, 1407
Alw26I	GTCTC	2 cut(s)	420, 625
AlwI	GGATC	4 cut(s)	341, 566, 697, 755
AlwNI	CAGNNNCTG	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	609
AoxI	GGCC	4 cut(s)	254, 584, 631, 1015
ApeKI	GCWGC	8 cut(s)	21, 203, 219, 793, 881, 942, 1066, 1187
ApoI	RAATTY	3 cut(s)	57, 91, 491
AspLEI	GCGC	2 cut(s)	664, 953
AspS9I	GGNCC	5 cut(s)	332, 584, 632, 1016, 1373
AsuHPI	GGTGA	2 cut(s)	261, 415
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	332, 1373
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	3 cut(s)	992, 1368, 1407
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BccI	CCATC	3 cut(s)	126, 313, 1271
BceAI	ACGGC	1 cut(s)	1260
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BciT130I	CCWGG	3 cut(s)	253, 630, 1415
BcoDI	GTCTC	2 cut(s)	420, 625
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	4 cut(s)	174, 506, 569, 1142
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
BlsI	GCNGC	8 cut(s)	23, 205, 221, 795, 883, 944, 1068, 1189
Bme1390I	CCNGG	3 cut(s)	253, 630, 1415
Bme18I	GGWCC	2 cut(s)	332, 1373
BmgT120I	GGNCC	5 cut(s)	332, 584, 632, 1016, 1373
BmiI	GGNNCC	5 cut(s)	280, 417, 552, 627, 1110
BmrFI	CCNGG	3 cut(s)	253, 630, 1415
BmsI	GCATC	3 cut(s)	722, 880, 1184
BmtI	GCTAGC	1 cut(s)	509
BoxI	GACNNNNGTC	1 cut(s)	1378
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	2 cut(s)	510, 826
BsaAI	YACGTR	1 cut(s)	1402
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	2 cut(s)	420, 625
BsaJI	CCNNGG	4 cut(s)	328, 430, 451, 1388
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	7 cut(s)	252, 436, 541, 581, 616, 808, 1025
Bse1I	ACTGG	1 cut(s)	1262
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	609
BseBI	CCWGG	3 cut(s)	253, 630, 1415
BseDI	CCNNGG	4 cut(s)	328, 430, 451, 1388
BseGI	GGATG	1 cut(s)	1204
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	7 cut(s)	252, 436, 541, 581, 616, 808, 1025
BseMII	CTCAG	5 cut(s)	119, 327, 501, 731, 974
BseNI	ACTGG	1 cut(s)	1262
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BsgI	GTGCAG	2 cut(s)	1124, 1313
Bsh1236I	CGCG	1 cut(s)	577
Bsh1285I	CGRYCG	1 cut(s)	985
BshFI	GGCC	4 cut(s)	256, 586, 633, 1017
BsiEI	CGRYCG	1 cut(s)	985
BsiHKAI	GWGCWC	3 cut(s)	992, 1368, 1407
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	1407
BslI	CCNNNNNNNGG	7 cut(s)	252, 436, 541, 581, 616, 808, 1025
BsmAI	GTCTC	2 cut(s)	420, 625
BsmFI	GGGAC	1 cut(s)	1407
BsmI	GAATGC	2 cut(s)	441, 909
BsnI	GGCC	4 cut(s)	256, 586, 633, 1017
Bso31I	GGTCTC	2 cut(s)	420, 625
Bsp1286I	GDGCHC	3 cut(s)	992, 1368, 1407
Bsp13I	TCCGGA	1 cut(s)	609
Bsp143I	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
Bsp19I	CCATGG	1 cut(s)	1388
BspACI	CCGC	3 cut(s)	108, 282, 575
BspANI	GGCC	4 cut(s)	256, 586, 633, 1017
BspCNI	CTCAG	5 cut(s)	120, 328, 502, 730, 973
BspEI	TCCGGA	1 cut(s)	609
BspFNI	CGCG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	5 cut(s)	280, 417, 552, 627, 1110
BspMI	ACCTGC	1 cut(s)	1096
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	4 cut(s)	341, 566, 697, 755
BspQI	GCTCTTC	2 cut(s)	1089, 1279
BspTNI	GGTCTC	2 cut(s)	420, 625
BsrI	ACTGG	1 cut(s)	1262
BssECI	CCNNGG	4 cut(s)	328, 430, 451, 1388
BssMI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	4 cut(s)	328, 430, 451, 1388
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	3 cut(s)	253, 630, 1415
Bst4CI	ACNGT	2 cut(s)	1038, 1195
Bst6I	CTCTTC	3 cut(s)	116, 1089, 1279
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	1402
BstC8I	GCNNGC	5 cut(s)	507, 1015, 1118, 1185, 1222
BstDEI	CTNAG	8 cut(s)	11, 128, 336, 510, 717, 826, 905, 960
BstDSI	CCRYGG	1 cut(s)	1388
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	1204
BstFNI	CGCG	1 cut(s)	577
BstHHI	GCGC	2 cut(s)	664, 953
BstKTI	GATC	6 cut(s)	349, 568, 574, 692, 763, 985
BstMAI	GTCTC	2 cut(s)	420, 625
BstMBI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
BstMCI	CGRYCG	1 cut(s)	985
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 114, 583, 948, 1031, 1196, 1322, 1419
BstNI	CCWGG	3 cut(s)	253, 630, 1415
BstNSI	RCATGY	2 cut(s)	1120, 1187
BstPAI	GACNNNNGTC	1 cut(s)	1378
BstSCI	CCNGG	3 cut(s)	251, 628, 1413
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	3 cut(s)	565, 571, 760
BstYI	RGATCY	3 cut(s)	565, 571, 760
BsuRI	GGCC	4 cut(s)	256, 586, 633, 1017
BtgI	CCRYGG	1 cut(s)	1388
BtsCI	GGATG	1 cut(s)	1204
BtsIMutI	CAGTG	3 cut(s)	1034, 1269, 1316
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	5 cut(s)	507, 1015, 1118, 1185, 1222
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	2 cut(s)	664, 953
Cfr13I	GGNCC	5 cut(s)	332, 584, 632, 1016, 1373
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	6 cut(s)	96, 118, 860, 1117, 1184, 1389
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	8 cut(s)	11, 128, 336, 510, 717, 826, 905, 960
DpnI	GATC	6 cut(s)	348, 567, 573, 691, 762, 984
DpnII	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
DraI	TTTAAA	1 cut(s)	967
Eam1104I	CTCTTC	3 cut(s)	116, 1089, 1279
EarI	CTCTTC	3 cut(s)	116, 1089, 1279
Eco130I	CCWWGG	4 cut(s)	328, 430, 451, 1388
Eco31I	GGTCTC	2 cut(s)	420, 625
Eco47I	GGWCC	2 cut(s)	332, 1373
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	3 cut(s)	251, 628, 1413
EcoT14I	CCWWGG	4 cut(s)	328, 430, 451, 1388
EcoT22I	ATGCAT	2 cut(s)	1177, 1185
ErhI	CCWWGG	4 cut(s)	328, 430, 451, 1388
FaeI	CATG	6 cut(s)	99, 121, 863, 1120, 1187, 1392
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 888, 920
FaqI	GGGAC	1 cut(s)	1407
FatI	CATG	6 cut(s)	95, 117, 859, 1116, 1183, 1388
FauNDI	CATATG	1 cut(s)	1409
FblI	GTMKAC	2 cut(s)	303, 999
Fnu4HI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
FokI	GGATG	1 cut(s)	1191
Fsp4HI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
FspBI	CTAG	4 cut(s)	174, 506, 569, 1142
GlaI	GCGC	2 cut(s)	663, 952
GluI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
HaeIII	GGCC	4 cut(s)	256, 586, 633, 1017
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	2 cut(s)	664, 953
Hin1II	CATG	6 cut(s)	99, 121, 863, 1120, 1187, 1392
Hin6I	GCGC	2 cut(s)	662, 951
HinP1I	GCGC	2 cut(s)	662, 951
HincII	GTYRAC	3 cut(s)	304, 1000, 1236
HindII	GTYRAC	3 cut(s)	304, 1000, 1236
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	6 cut(s)	66, 305, 499, 812, 1146, 1395
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	2 cut(s)	261, 415
Hpy166II	GTNNAC	4 cut(s)	304, 1000, 1236, 1373
Hpy188I	TCNGA	5 cut(s)	562, 625, 720, 987, 1355
Hpy188III	TCNNGA	6 cut(s)	496, 569, 610, 860, 980, 1274
Hpy8I	GTNNAC	4 cut(s)	304, 1000, 1236, 1373
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	252, 334
HpyCH4III	ACNGT	2 cut(s)	1038, 1195
HpyCH4IV	ACGT	2 cut(s)	480, 1401
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 114, 583, 948, 1031, 1196, 1322, 1419
HpyF3I	CTNAG	8 cut(s)	11, 128, 336, 510, 717, 826, 905, 960
HpySE526I	ACGT	2 cut(s)	480, 1401
Hsp92II	CATG	6 cut(s)	99, 121, 863, 1120, 1187, 1392
HspAI	GCGC	2 cut(s)	662, 951
Kpn2I	TCCGGA	1 cut(s)	609
Kzo9I	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
LguI	GCTCTTC	2 cut(s)	1089, 1279
LmnI	GCTCC	5 cut(s)	75, 415, 612, 790, 987
Lsp1109I	GCAGC	8 cut(s)	33, 190, 231, 780, 868, 954, 1053, 1174
LweI	GCATC	3 cut(s)	722, 880, 1184
MaeI	CTAG	4 cut(s)	174, 506, 569, 1142
MaeII	ACGT	2 cut(s)	480, 1401
MaeIII	GTNAC	3 cut(s)	403, 514, 1380
MalI	GATC	6 cut(s)	348, 567, 573, 691, 762, 984
MboI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	3 cut(s)	565, 571, 760
MhlI	GDGCHC	3 cut(s)	992, 1368, 1407
MlyI	GAGTC	5 cut(s)	299, 493, 821, 1140, 1389
Mph1103I	ATGCAT	2 cut(s)	1177, 1185
MroI	TCCGGA	1 cut(s)	609
MseI	TTAA	5 cut(s)	33, 312, 369, 966, 1251
MslI	CAYNNNNRTG	1 cut(s)	1387
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	3 cut(s)	253, 630, 1415
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	441, 909
MvaI	CCWGG	3 cut(s)	253, 630, 1415
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	8 cut(s)	105, 114, 583, 948, 1031, 1196, 1322, 1419
NcoI	CCATGG	1 cut(s)	1388
NdeI	CATATG	1 cut(s)	1409
NdeII	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	6 cut(s)	99, 121, 863, 1120, 1187, 1392
NlaIV	GGNNCC	5 cut(s)	280, 417, 552, 627, 1110
NmuCI	GTSAC	2 cut(s)	403, 1380
NsiI	ATGCAT	2 cut(s)	1177, 1185
NspI	RCATGY	2 cut(s)	1120, 1187
PaeI	GCATGC	2 cut(s)	1120, 1187
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	2 cut(s)	1089, 1279
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	2 cut(s)	441, 909
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	8 cut(s)	23, 205, 221, 795, 883, 944, 1068, 1189
Ple19I	CGATCG	1 cut(s)	985
PleI	GAGTC	5 cut(s)	299, 493, 820, 1140, 1389
PpsI	GAGTC	5 cut(s)	299, 493, 820, 1140, 1389
Ppu21I	YACGTR	1 cut(s)	1402
PshAI	GACNNNNGTC	1 cut(s)	1378
Psp6I	CCWGG	3 cut(s)	251, 628, 1413
PspGI	CCWGG	3 cut(s)	251, 628, 1413
PspN4I	GGNNCC	5 cut(s)	280, 417, 552, 627, 1110
PspPI	GGNCC	5 cut(s)	332, 584, 632, 1016, 1373
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	3 cut(s)	565, 571, 760
PvuI	CGATCG	1 cut(s)	985
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	1387
SalI	GTCGAC	2 cut(s)	302, 998
SapI	GCTCTTC	2 cut(s)	1089, 1279
SaqAI	TTAA	5 cut(s)	33, 312, 369, 966, 1251
SatI	GCNGC	8 cut(s)	22, 204, 220, 794, 882, 943, 1067, 1188
Sau3AI	GATC	6 cut(s)	346, 565, 571, 689, 760, 982
Sau96I	GGNCC	5 cut(s)	332, 584, 632, 1016, 1373
SchI	GAGTC	5 cut(s)	299, 493, 821, 1140, 1389
ScrFI	CCNGG	3 cut(s)	253, 630, 1415
SduI	GDGCHC	3 cut(s)	992, 1368, 1407
SfaNI	GCATC	3 cut(s)	722, 880, 1184
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	332, 1373
SmiMI	CAYNNNNRTG	1 cut(s)	1387
SpeI	ACTAGT	1 cut(s)	173
SphI	GCATGC	2 cut(s)	1120, 1187
SsiI	CCGC	3 cut(s)	108, 282, 575
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	4 cut(s)	174, 506, 569, 1142
StyD4I	CCNGG	3 cut(s)	251, 628, 1413
StyI	CCWWGG	4 cut(s)	328, 430, 451, 1388
TaaI	ACNGT	2 cut(s)	1038, 1195
TaiI	ACGT	2 cut(s)	483, 1404
TaqI	TCGA	2 cut(s)	303, 999
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	5 cut(s)	33, 312, 369, 966, 1251
Tru9I	TTAA	5 cut(s)	33, 312, 369, 966, 1251
TscAI	CASTG	3 cut(s)	1041, 1269, 1323
TseFI	GTSAC	2 cut(s)	403, 1380
TseI	GCWGC	8 cut(s)	21, 203, 219, 793, 881, 942, 1066, 1187
Tsp45I	GTSAC	2 cut(s)	403, 1380
TspDTI	ATGAA	6 cut(s)	84, 134, 848, 876, 910, 1193
TspRI	CASTG	3 cut(s)	1041, 1269, 1323
VpaK11BI	GGWCC	2 cut(s)	332, 1373
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	3 cut(s)	57, 91, 491
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	2 cut(s)	1120, 1187
XcmI	CCANNNNNNNNNTGG	3 cut(s)	69, 642, 1096
XmiI	GTMKAC	2 cut(s)	303, 999
XspI	CTAG	4 cut(s)	174, 506, 569, 1142
Zsp2I	ATGCAT	2 cut(s)	1177, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.