Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002312.1

Orthogroup ID

OG0009821

Physical Location & Seq

Genomic Coordinates Reverse (-)

151695 .. 156316

Gene Structure 4622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002312.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggcagcagctcattggttatgttctcggcagcagcgagcagctttggtggcgatctgcatttcttttgtgttcaataccaactgcgcagttgctggtcggcagataataagatccagtaccggacaggatcatattaggaggaacctcttggacaatggactaggtataacaccacctatgggatggaatagttggaatcacttcaactgtcacattgaagaaaaattgattagagaaactgcggactcgatggtatcaacaggacttgctgcacttggctacgaatatataaatttagatgattgctgggctgaacttgatcgagattcggagggaaatttcgttccaaaatcttcagcatttccatctggaatcaaggctttagcagattatgtccacagcaaagggctgaagcttgggatttactccgatgctggaactctgacatgcagtaaacaaatgcccggatcactaggccatgaggaacaagatgcacaaactttcgcttcctggggaattgactacttgaagtatgataattgttacaatacgggtacaagtcctaaagataggtatccagtaatgagtaaagctttactaaactccacaaggccaatcttcttttccctatgtgaatggggacaggaagaccctgcaacttgggcagcgagtgttggaaatagttggagaacaacaggagacattggtgataactggaataggggacaggaagaccctgcaacttgggcagcgagtgttggaaatagttggagaacaacaggagacattggtgataactggaataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009909 GO:0009911 GO:0009965 GO:0010016 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0099402 GO:1905392 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

270

Amino Acids

29.86

Weight (kDa)

5.35

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08370 AT5G08370
fragaria_vesca	FvH4_4g05940 FvH4_4g05940 FvH4_4g05940
malus_domestica	MD05G1321500.v1.1 MD05G1321600.v1.1 MD05G1321700.v1.1
prunus_persica	Prupe.4G041000_v2.0.a1 Prupe.4G041000_v2.0.a1
pyrus_communis	pycom05g29600 pycom05g29610
rosa_chinensis	RchiOBHm_Chr4g0397131
rosa_laevigata	RLG00000009444
rosa_multiflora	Rmu_sc0002312.1_g000033
rosa_roxburghii	Rroxscaffold_5G00342100
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077500 Rh4CG082700 Rh4DG070600
rosa_wichuraiana	Rw4G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	3 cut(s)	108, 138, 478
AcsI	RAATTY	2 cut(s)	295, 340
AcuI	CTGAAG	2 cut(s)	342, 434
AfaI	GTAC	2 cut(s)	121, 559
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	76, 208, 221, 532
AjnI	CCWGG	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	11, 44, 418, 596
AluI	AGCT	4 cut(s)	11, 44, 418, 596
Alw26I	GTCTC	2 cut(s)	696, 780
AlwI	GGATC	3 cut(s)	108, 138, 478
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	478, 614
ApeKI	GCWGC	8 cut(s)	5, 8, 31, 34, 41, 272, 668, 752
ApoI	RAATTY	2 cut(s)	295, 340
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	722, 806
BbsI	GAAGAC	2 cut(s)	657, 741
BbvI	GCAGC	8 cut(s)	17, 20, 43, 46, 53, 259, 680, 764
BccI	CCATC	3 cut(s)	180, 247, 376
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	696, 780
BfaI	CTAG	2 cut(s)	164, 476
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	8 cut(s)	6, 9, 32, 35, 42, 273, 669, 753
BlsI	GCNGC	8 cut(s)	7, 10, 33, 36, 43, 274, 670, 754
Bme1390I	CCNGG	2 cut(s)	468, 514
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	468, 514
BmsI	GCATC	2 cut(s)	424, 484
BpiI	GAAGAC	2 cut(s)	657, 741
BpuMI	CCSGG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	4 cut(s)	117, 581, 722, 806
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseNI	ACTGG	4 cut(s)	117, 581, 722, 806
BseXI	GCAGC	8 cut(s)	17, 20, 43, 46, 53, 259, 680, 764
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	480, 616
BsiSI	CCGG	2 cut(s)	123, 468
BslFI	GGGAC	2 cut(s)	657, 741
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	696, 780
BsmFI	GGGAC	2 cut(s)	657, 741
BsnI	GGCC	2 cut(s)	480, 616
Bsp143I	GATC	5 cut(s)	54, 113, 130, 322, 470
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	480, 616
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	108, 138, 478
BsrI	ACTGG	4 cut(s)	117, 581, 722, 806
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	5 cut(s)	54, 113, 130, 322, 470
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	5 cut(s)	57, 116, 133, 325, 473
BstMAI	GTCTC	2 cut(s)	696, 780
BstMBI	GATC	5 cut(s)	54, 113, 130, 322, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 665, 749
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	2 cut(s)	466, 512
BstV1I	GCAGC	8 cut(s)	17, 20, 43, 46, 53, 259, 680, 764
BstV2I	GAAGAC	2 cut(s)	657, 741
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	480, 616
BtsCI	GGATG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	120, 558
CviAII	CATG	2 cut(s)	450, 482
CviQI	GTAC	2 cut(s)	120, 558
DpnI	GATC	5 cut(s)	56, 115, 132, 324, 472
DpnII	GATC	5 cut(s)	54, 113, 130, 322, 470
Eco57I	CTGAAG	2 cut(s)	342, 434
EcoRII	CCWGG	1 cut(s)	512
FaeI	CATG	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	657, 741
FatI	CATG	2 cut(s)	449, 481
Fnu4HI	GCNGC	8 cut(s)	6, 9, 32, 35, 42, 273, 669, 753
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	8 cut(s)	6, 9, 32, 35, 42, 273, 669, 753
FspBI	CTAG	2 cut(s)	164, 476
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	8 cut(s)	6, 9, 32, 35, 42, 273, 669, 753
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	480, 616
HapII	CCGG	2 cut(s)	123, 468
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	453, 485
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	416, 594
HinfI	GANTC	4 cut(s)	199, 248, 329, 375
HpaII	CCGG	2 cut(s)	123, 468
HphI	GGTGA	2 cut(s)	722, 806
Hpy166II	GTNNAC	2 cut(s)	400, 458
Hpy188I	TCNGA	3 cut(s)	334, 433, 447
Hpy188III	TCNNGA	2 cut(s)	326, 372
Hpy8I	GTNNAC	2 cut(s)	400, 458
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	60, 275, 453, 497, 659, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 665, 749
Hsp92II	CATG	2 cut(s)	453, 485
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	54, 113, 130, 322, 470
Lsp1109I	GCAGC	8 cut(s)	17, 20, 43, 46, 53, 259, 680, 764
LweI	GCATC	2 cut(s)	424, 484
MaeI	CTAG	2 cut(s)	164, 476
MaeIII	GTNAC	2 cut(s)	212, 545
MalI	GATC	5 cut(s)	56, 115, 132, 324, 472
MboI	GATC	5 cut(s)	54, 113, 130, 322, 470
MboII	GAAGA	5 cut(s)	233, 348, 613, 662, 746
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	5 cut(s)	227, 295, 340, 519, 541
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	5 cut(s)	176, 658, 668, 742, 752
MnlI	CCTC	4 cut(s)	135, 158, 328, 478
MroXI	GAANNNNTTC	1 cut(s)	203
MspI	CCGG	2 cut(s)	123, 468
MspR9I	CCNGG	2 cut(s)	468, 514
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	50, 665, 749
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	54, 113, 130, 322, 470
NlaIII	CATG	2 cut(s)	453, 485
NlaIV	GGNNCC	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	199, 329, 375
PkrI	GCNGC	8 cut(s)	7, 10, 33, 36, 43, 274, 670, 754
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	2 cut(s)	121, 559
RsaNI	GTAC	2 cut(s)	120, 558
SatI	GCNGC	8 cut(s)	6, 9, 32, 35, 42, 273, 669, 753
Sau3AI	GATC	5 cut(s)	54, 113, 130, 322, 470
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	468, 514
SetI	ASST	9 cut(s)	13, 46, 150, 169, 181, 420, 578, 598, 812
SfaNI	GCATC	2 cut(s)	424, 484
Sse9I	AATT	5 cut(s)	227, 295, 340, 519, 541
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	164, 476
StyD4I	CCNGG	2 cut(s)	466, 512
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	251, 325
TasI	AATT	5 cut(s)	227, 295, 340, 519, 541
TfiI	GAWTC	3 cut(s)	199, 329, 375
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	8 cut(s)	5, 8, 31, 34, 41, 272, 668, 752
Tsp45I	GTSAC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	295, 340
XceI	RCATGY	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	164, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.