Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015314

Physical Location & Seq

Genomic Coordinates Reverse (-)

12888841 .. 12891087

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCGACGAAGCCAACAGAGCTGCGTTCATGGAGATTCAAGGTCGCATGATCGCGCTCACCGCCAAACTCAAGCAGGTGCAGAACCAGATGCGAAACAAAGAAGGAGAAAAGAAGCGTGCTTTTCTAACCCTAGAGGAGATTCGCCCTTTGCCTGATGACGCCAATACTTACAAATCCATAGGAAGAACGTTTGTTTTAGAGCCCAAGTCAGTGTTGGTGAATGAACAGGAGCAGAAGCTCAAGGATAGTGAGAGTGCAATTGCCTCACTACAGACCTCAAAGGAATACATTGAGAAACAGATTGGAGAGGTGGAGAGCAACTTGAGGGAGCTATTGAACCAGGATCCAAGTCTTGCTCGTCAGATAATGTCCATGACTGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0009987 GO:0016043 GO:0021537 GO:0021549 GO:0022037 GO:0030029 GO:0030036 GO:0030900 GO:0030902 GO:0032501 GO:0032502 GO:0042113 GO:0044183 GO:0044424 GO:0044464 GO:0045321 GO:0046649 GO:0048513 GO:0048731 GO:0048856 GO:0060322 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

5.64

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	12 - 115	1.5e-21	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07340 AT2G07340
fragaria_vesca	FvH4_4g05950
malus_domestica	MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica	Prupe.1G063000_v2.0.a1
pyrus_communis	pycom13g20440 pycom16g19840
rosa_chinensis	RchiOBHm_Chr4g0397141
rosa_laevigata	RLG00000009443
rosa_multiflora	Rmu_sc0002312.1_g000044
rosa_roxburghii	Rroxscaffold_5G00342130
rosa_rugosa	Rorug03G0344600
rosa_samantha	Rh4AG077600 Rh4BG073100
rosa_wichuraiana	Rw4G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	63
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	2 cut(s)	341, 354
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	41, 340
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	23, 241, 334
AluI	AGCT	3 cut(s)	23, 241, 334
AlwI	GGATC	2 cut(s)	341, 354
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	52, 232
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	3 cut(s)	56, 227, 346
BsaHI	GRCGYC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	51, 346
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	341, 354
BssMI	GATC	2 cut(s)	51, 346
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	382
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	54, 349
BstMBI	GATC	2 cut(s)	51, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 62
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	31, 49, 376
CviJI	RGCY	6 cut(s)	5, 14, 23, 205, 241, 334
CviKI_1	RGCY	6 cut(s)	5, 14, 23, 205, 241, 334
DpnI	GATC	2 cut(s)	53, 348
DpnII	GATC	2 cut(s)	51, 346
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	3 cut(s)	34, 52, 379
FaiI	YATR	4 cut(s)	32, 50, 182, 377
FatI	CATG	3 cut(s)	30, 48, 375
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	34, 52, 379
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	37, 142
HphI	GGTGA	2 cut(s)	52, 232
Hpy188I	TCNGA	1 cut(s)	366
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	82, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 62
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	34, 52, 379
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	51, 346
LmnI	GCTCC	2 cut(s)	232, 331
LpnPI	CCDG	6 cut(s)	62, 101, 168, 215, 329, 356
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	53, 348
MboI	GATC	2 cut(s)	51, 346
MboII	GAAGA	1 cut(s)	198
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	261
MnlI	CCTC	5 cut(s)	130, 277, 289, 304, 321
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 62
NdeII	GATC	2 cut(s)	51, 346
NlaIII	CATG	3 cut(s)	34, 52, 379
NlaIV	GGNNCC	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	37, 142
PkrI	GCNGC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	346
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	51, 346
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	25, 46, 81, 194, 243, 281, 315, 336
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	272
SmlI	CTYRAG	3 cut(s)	71, 242, 325
SmoI	CTYRAG	3 cut(s)	71, 242, 325
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	194
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	37, 142
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	19, 240
TspRI	CASTG	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.