MD16G1236600.v1.1

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015314
Physical Location & Seq
Reverse (-)
24892959 .. 24896691
3733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1236600.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGCCGACGAAGCCAACAGGGCTGCGTTCTTGGAAATTCAAGGCCGCATGATCGAGCTCACTGCGAAATTGAAGCAGGTGCAGACGCAGATGCGGAACAAGGAAGGAGAAAGGAAGCGTGCTTTTCTAACCTTGGAGGAGCTGCGGCCTCTATCTGATGATTCAAATACTTACAAATCTATAGGGAGAACGTTTGTGTTAGAGCCCAAGTCAGTGTTAGTGAAAGAACAGGAACAAAAGCTCAAGGATAGTGAGACTGCAATCGCCTCGCTCCAGACCTCAAAGGAATACATCGAGAAACAGGTTGCAGAGGTGGAGAGCAACTTGAGGGAGCTATTGAACCAAGATCCAGCTCTTGCTCGCCAGATAATGTCCATGTCTGTAATGTAG

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

5.67

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 13 - 115 1.7e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07340 AT2G07340
fragaria_vesca FvH4_4g05950
malus_domestica MD13G1231800.v1.1 MD16G1236600.v1.1
prunus_persica Prupe.1G063000_v2.0.a1
pyrus_communis pycom13g20440 pycom16g19840
rosa_chinensis RchiOBHm_Chr4g0397141
rosa_laevigata RLG00000009443
rosa_multiflora Rmu_sc0002312.1_g000044
rosa_roxburghii Rroxscaffold_5G00342130
rosa_rugosa Rorug03G0344600
rosa_samantha Rh4AG077600 Rh4BG073100
rosa_wichuraiana Rw4G006270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 3 cut(s) 46, 94, 145
AclI AACGTT 1 cut(s) 191
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 36
AgsI TTSAA 4 cut(s) 41, 73, 165, 340
AluBI AGCT 5 cut(s) 58, 142, 241, 334, 353
AluI AGCT 5 cut(s) 58, 142, 241, 334, 353
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 341
AoxI GGCC 3 cut(s) 3, 43, 146
ApeKI GCWGC 2 cut(s) 23, 142
ApoI RAATTY 1 cut(s) 36
BanII GRGCYC 2 cut(s) 60, 207
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 10, 129
BcgI CGANNNNNNTGC 4 cut(s) 44, 78, 249, 283
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 4 cut(s) 24, 46, 143, 146
BlsI GCNGC 4 cut(s) 25, 47, 144, 147
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 227, 346
BsaJI CCNNGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 10, 129
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 5, 45, 148
BsiHKAI GWGCWC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 3 cut(s) 5, 45, 148
Bsp1286I GDGCHC 2 cut(s) 60, 207
Bsp143I GATC 2 cut(s) 51, 346
BspACI CCGC 3 cut(s) 46, 94, 145
BspANI GGCC 3 cut(s) 5, 45, 148
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 51, 346
BssT1I CCWWGG 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 120, 361
BstKTI GATC 2 cut(s) 54, 349
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 51, 346
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 10, 129
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 3 cut(s) 5, 45, 148
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 60, 219
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 120, 361
CseI GACGC 1 cut(s) 94
CviAII CATG 2 cut(s) 49, 376
DpnI GATC 2 cut(s) 53, 348
DpnII GATC 2 cut(s) 51, 346
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 60, 207
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 60, 207
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 52, 379
FaiI YATR 3 cut(s) 50, 182, 377
FatI CATG 2 cut(s) 48, 375
Fnu4HI GCNGC 4 cut(s) 24, 46, 143, 146
FriOI GRGCYC 2 cut(s) 60, 207
Fsp4HI GCNGC 4 cut(s) 24, 46, 143, 146
GluI GCNGC 4 cut(s) 24, 46, 143, 146
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 5, 45, 148
HgaI GACGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 52, 379
HinfI GANTC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 274, 295
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 82, 260, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 52, 379
Kzo9I GATC 2 cut(s) 51, 346
LmnI GCTCC 3 cut(s) 139, 276, 331
LpnPI CCDG 7 cut(s) 4, 62, 215, 287, 287, 363, 377
Lsp1109I GCAGC 2 cut(s) 10, 129
LweI GCATC 1 cut(s) 81
MaeII ACGT 1 cut(s) 191
MalI GATC 2 cut(s) 53, 348
MboI GATC 2 cut(s) 51, 346
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 2 cut(s) 60, 207
MluCI AATT 2 cut(s) 36, 68
MnlI CCTC 6 cut(s) 130, 159, 277, 289, 304, 321
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 51, 346
NlaIII CATG 2 cut(s) 52, 379
PaqCI CACCTGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 4 cut(s) 25, 47, 144, 147
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 191
PsuI RGATCY 1 cut(s) 346
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 4 cut(s) 24, 46, 143, 146
Sau3AI GATC 2 cut(s) 51, 346
SduI GDGCHC 2 cut(s) 60, 207
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 242, 325
SmoI CTYRAG 2 cut(s) 242, 325
Sse9I AATT 2 cut(s) 36, 68
SsiI CCGC 3 cut(s) 46, 94, 145
SstI GAGCTC 1 cut(s) 60
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 54, 294
TasI AATT 2 cut(s) 36, 68
TauI GCSGC 2 cut(s) 48, 148
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 2 cut(s) 67, 219
TseI GCWGC 2 cut(s) 23, 142
TspRI CASTG 2 cut(s) 67, 219
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.