AT2G07749

Mitovirus RNA-dependent RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017129
Physical Location & Seq
Forward (+)
3247003 .. 3249357
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07749.1

Sequence Viewer

Length: 741 bp
ATGGTCTCTCAAGACGGTACCTTCCATCAAGAAGGTCCTATCCATCGTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGGCCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGTCAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTGTGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCATGCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGCTTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTGATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTCGCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCAGTATCTGCGAAAGCTGTGCTTGAGAGCTACTTCCTCGTTGGTACTCAGCAGTTGGCCTATAAGTACAAGTTAAGTCCTAAGACTTGTTTAAGGTTAAATAAAGCTGGATACCGCGTGCTAGGACAAATGGACACTACACTAAGGCCCTATCCCGGCGTTTTAGTCGGATTCAGGCGTTATCTAGTAAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitovir_RNA_pol

Protein Analysis

246

Amino Acids

27.48

Weight (kDa)

9.27

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mitovir_RNA_pol PF05919 3 - 192 5.1e-49 Mitovirus RNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 17, 182
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 2 cut(s) 293, 660
AciI CCGC 2 cut(s) 508, 658
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 4 cut(s) 19, 422, 589, 611
AfeI AGCGCT 1 cut(s) 94
AfiI CCNNNNNNNGG 4 cut(s) 49, 105, 108, 698
AgsI TTSAA 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 489
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 5 cut(s) 133, 560, 573, 650, 735
AluI AGCT 5 cut(s) 133, 560, 573, 650, 735
Alw26I GTCTC 4 cut(s) 10, 52, 346, 476
AlwNI CAGNNNCTG 1 cut(s) 551
Aor51HI AGCGCT 1 cut(s) 94
AoxI GGCC 3 cut(s) 110, 600, 689
ApeKI GCWGC 2 cut(s) 95, 323
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 35, 111, 690
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 2 cut(s) 17, 182
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 82, 335
BccI CCATC 3 cut(s) 33, 51, 154
BceAI ACGGC 2 cut(s) 242, 289
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 647
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 4 cut(s) 10, 52, 346, 476
BfaI CTAG 2 cut(s) 665, 728
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 2 cut(s) 96, 324
BlsI GCNGC 2 cut(s) 97, 325
Bme1390I CCNGG 2 cut(s) 280, 699
Bme18I GGWCC 1 cut(s) 35
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 3 cut(s) 35, 111, 690
BmiI GGNNCC 3 cut(s) 19, 184, 277
BmrFI CCNGG 2 cut(s) 280, 699
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 3 cut(s) 173, 427, 451
BmuI ACTGGG 1 cut(s) 539
Bpu10I CCTNAGC 2 cut(s) 187, 414
BpuEI CTTGAG 3 cut(s) 109, 515, 587
BpuMI CCSGG 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 61
BsaI GGTCTC 2 cut(s) 10, 346
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 105, 108, 698
Bse1I ACTGG 3 cut(s) 119, 226, 545
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 49, 105, 108, 698
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 471, 605
BseNI ACTGG 3 cut(s) 119, 226, 545
BseXI GCAGC 2 cut(s) 82, 335
Bsh1236I CGCG 2 cut(s) 293, 660
Bsh1285I CGRYCG 2 cut(s) 106, 403
BshFI GGCC 3 cut(s) 112, 602, 691
BshNI GGYRCC 2 cut(s) 17, 182
BsiEI CGRYCG 2 cut(s) 106, 403
BsiSI CCGG 1 cut(s) 699
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 4 cut(s) 49, 105, 108, 698
BsmAI GTCTC 4 cut(s) 10, 52, 346, 476
BsmBI CGTCTC 2 cut(s) 52, 476
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 3 cut(s) 112, 602, 691
Bso31I GGTCTC 2 cut(s) 10, 346
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 103, 400
BspACI CCGC 2 cut(s) 508, 658
BspANI GGCC 3 cut(s) 112, 602, 691
BspCNI CTCAG 2 cut(s) 472, 604
BspFNI CGCG 2 cut(s) 293, 660
BspLI GGNNCC 3 cut(s) 19, 184, 277
BspMI ACCTGC 1 cut(s) 242
BspT107I GGYRCC 2 cut(s) 17, 182
BspTNI GGTCTC 2 cut(s) 10, 346
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 3 cut(s) 119, 226, 545
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 103, 400
BssNI GRCGYC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 17, 425
BstACI GRCGYC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 142, 662
BstDEI CTNAG 6 cut(s) 187, 414, 480, 591, 624, 686
BstFNI CGCG 2 cut(s) 293, 660
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 106, 403
BstMAI GTCTC 4 cut(s) 10, 52, 346, 476
BstMBI GATC 2 cut(s) 103, 400
BstMCI CGRYCG 2 cut(s) 106, 403
BstMWI GCNNNNNNNGC 2 cut(s) 290, 332
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 278, 697
BstUI CGCG 2 cut(s) 293, 660
BstV1I GCAGC 2 cut(s) 82, 335
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 3 cut(s) 112, 602, 691
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 142, 662
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 35, 111, 690
CseI GACGC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 18, 421, 588, 610
CviAII CATG 3 cut(s) 201, 230, 305
CviQI GTAC 4 cut(s) 18, 421, 588, 610
DdeI CTNAG 6 cut(s) 187, 414, 480, 591, 624, 686
DpnI GATC 2 cut(s) 105, 402
DpnII GATC 2 cut(s) 103, 400
DriI GACNNNNNGTC 1 cut(s) 489
Eam1105I GACNNNNNGTC 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 2 cut(s) 10, 346
Eco47I GGWCC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 35, 690
EcoRII CCWGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 286
Esp3I CGTCTC 2 cut(s) 52, 476
FaeI CATG 3 cut(s) 204, 233, 308
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 200, 229, 304
Fnu4HI GCNGC 2 cut(s) 96, 324
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 96, 324
FspBI CTAG 2 cut(s) 665, 728
GlaI GCGC 1 cut(s) 94
GluI GCNGC 2 cut(s) 96, 324
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 112, 602, 691
HapII CCGG 1 cut(s) 699
HgaI GACGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 3 cut(s) 204, 233, 308
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 1 cut(s) 714
HpaII CCGG 1 cut(s) 699
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 4 cut(s) 348, 460, 481, 713
Hpy188III TCNNGA 4 cut(s) 11, 29, 362, 494
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 26, 31, 526
HpyCH4III ACNGT 2 cut(s) 17, 425
HpyCH4V TGCA 3 cut(s) 171, 251, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 332
HpyF3I CTNAG 6 cut(s) 187, 414, 480, 591, 624, 686
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 3 cut(s) 204, 233, 308
HspAI GCGC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 103, 400
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 2 cut(s) 82, 335
LweI GCATC 3 cut(s) 173, 427, 451
MaeI CTAG 2 cut(s) 665, 728
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 105, 402
MboI GATC 2 cut(s) 103, 400
MhlI GDGCHC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 2 cut(s) 351, 590
MseI TTAA 4 cut(s) 519, 617, 635, 641
MspI CCGG 1 cut(s) 699
MspR9I CCNGG 2 cut(s) 280, 699
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 2 cut(s) 293, 660
MwoI GCNNNNNNNGC 2 cut(s) 290, 332
NciI CCSGG 1 cut(s) 699
NdeII GATC 2 cut(s) 103, 400
NlaIII CATG 3 cut(s) 204, 233, 308
NlaIV GGNNCC 3 cut(s) 19, 184, 277
PcsI WCGNNNNNNNCGW 2 cut(s) 164, 396
PfeI GAWTC 1 cut(s) 714
PflFI GACNNNGTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 2 cut(s) 97, 325
Ple19I CGATCG 2 cut(s) 106, 403
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 19, 184, 277
PspPI GGNCC 3 cut(s) 35, 111, 690
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 551
PsyI GACNNNGTC 1 cut(s) 389
PvuI CGATCG 2 cut(s) 106, 403
RsaI GTAC 4 cut(s) 19, 422, 589, 611
RsaNI GTAC 4 cut(s) 18, 421, 588, 610
SaqAI TTAA 4 cut(s) 519, 617, 635, 641
SatI GCNGC 2 cut(s) 96, 324
Sau3AI GATC 2 cut(s) 103, 400
Sau96I GGNCC 3 cut(s) 35, 111, 690
ScrFI CCNGG 2 cut(s) 280, 699
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 3 cut(s) 173, 427, 451
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 4 cut(s) 9, 88, 494, 566
SmoI CTYRAG 4 cut(s) 9, 88, 494, 566
SsiI CCGC 2 cut(s) 508, 658
SspMI CTAG 2 cut(s) 665, 728
StyD4I CCNGG 2 cut(s) 278, 697
TaaI ACNGT 2 cut(s) 17, 425
TaqI TCGA 2 cut(s) 363, 530
TaqII GACCGA 1 cut(s) 140
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 1 cut(s) 714
Tru1I TTAA 4 cut(s) 519, 617, 635, 641
Tru9I TTAA 4 cut(s) 519, 617, 635, 641
TseI GCWGC 2 cut(s) 95, 323
TspGWI ACGGA 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 35
XspI CTAG 2 cut(s) 665, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.