Rh4AG240200

BEST Arabidopsis thaliana protein match is Mitovirus RNA-dependent RNA polymerase (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017129
Physical Location & Seq
Reverse (-)
54534871 .. 54535836
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG240200.1

Sequence Viewer

Length: 966 bp
ATGTTTGAGATGTCAGCTTACGCGTTCCTCGTACAGTTTATTCACTTGTACGGTGAACAGTGGTCCTCTGGCATATTGTGGCCATCTCGGGTTCGCTTCGCGGGGGACAAGAACAAAAAAATGTTCTCGGGCTCTGATCTGGACTATTACGAAAAATATATTGGTCCATCACTGCCCCACCCGGAGCAACTCGAGATTCCGCCTGTAACTGGTCGTCTAGGTCAGACGATTGAGCAGGGCACAAAGAGGGGGGTATTCGCCATTTCCAATTACATCAATCAAAGACTTCTGAAGCCAATCATGGACTGGCTTCAGAGGGTCTTGCGACCTTTGCCGATGGACGGTACCTTTAACCAGCAGCGACCTCTTGATCGTCTAATTTGGTCGACATGTTGTCACTGCTTTGATCTTAAGTCAGCAACCGATAGGTGGCCGTTATCTTTAATGTTCGAAGTTATGTGTCACATGTTTGATCGCCGTTTCGCGCCGGGAGTTGTCAACTCTGCCCTAGGTGCAAACATATTTGATGTGCCCTTCGTTAAGAAGAATAGGTCATCAGTATCCTTTGTGACCGGGCAGCCACTGGGGTACTACTCCTCTTGGCCTCTGTTCGCACTCACTCATCACTTTGTGGTGTGGTGGTGTGCGCAGCAGGTTCATCCTGGTCGACGCTTTGATAAGTACGCAGTGCTTGGCGATGACGTCATAATTTGTGACGATCTCGTCGCTGAGAAATACAAGGAGGTCCTGGATTTCCTTGAGGCCAAGATTTCTGTACATAAATCGTTGATCTCGCATTCTGGGACTAGTGAGTTTGCTAAGAGATTTCGTGTTCGGGGTCTGGCGGTCGATTTGTCGCCGGCCTCAGCACAAGCCCTAACTAACTTTTATCATCCTTATGGCCTTATGGCTATAAATGATAGGTATCCGGTACGCAGGGTTTGGTTTCAACCCTGTGCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitovir_RNA_pol

Protein Analysis

321

Amino Acids

36.92

Weight (kDa)

9.0

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mitovir_RNA_pol PF05919 67 - 299 1.7e-61 Mitovirus RNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AatII GACGTC 1 cut(s) 705
Acc16I TGCGCA 1 cut(s) 648
Acc36I ACCTGC 1 cut(s) 643
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 344
AccI GTMKAC 2 cut(s) 386, 667
AccII CGCG 3 cut(s) 23, 101, 485
AciI CCGC 3 cut(s) 101, 200, 845
AcoI YGGCCR 2 cut(s) 80, 431
AcuI CTGAAG 2 cut(s) 296, 311
AcyI GRCGYC 1 cut(s) 702
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 7 cut(s) 33, 50, 346, 590, 683, 777, 933
AfiI CCNNNNNNNGG 4 cut(s) 209, 341, 429, 959
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 3 cut(s) 21, 389, 465
AgsI TTSAA 1 cut(s) 950
AhdI GACNNNNNGTC 1 cut(s) 393
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 2 cut(s) 661, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 3 cut(s) 87, 127, 191
AoxI GGCC 6 cut(s) 80, 431, 602, 762, 861, 901
ApeKI GCWGC 3 cut(s) 358, 577, 649
Asp718I GGTACC 1 cut(s) 344
AspA2I CCTAGG 1 cut(s) 508
AspLEI GCGC 2 cut(s) 487, 649
AspS9I GGNCC 3 cut(s) 63, 164, 745
AsuC2I CCSGG 3 cut(s) 182, 489, 574
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 450
AvaI CYCGRG 3 cut(s) 87, 127, 191
AvaII GGWCC 3 cut(s) 63, 164, 745
AvrII CCTAGG 1 cut(s) 508
BaeGI GKGCMC 2 cut(s) 242, 534
BalI TGGCCA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 865
BbvI GCAGC 3 cut(s) 370, 589, 661
BccI CCATC 3 cut(s) 91, 175, 331
BceAI ACGGC 2 cut(s) 418, 462
BciT130I CCWGG 2 cut(s) 663, 749
BciVI GTATCC 2 cut(s) 571, 936
BcnI CCSGG 3 cut(s) 182, 489, 574
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 3 cut(s) 218, 509, 807
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 643
BfuI GTATCC 2 cut(s) 571, 936
BisI GCNGC 3 cut(s) 359, 578, 650
BlnI CCTAGG 1 cut(s) 508
BlsI GCNGC 3 cut(s) 360, 579, 651
Bme1390I CCNGG 5 cut(s) 182, 489, 574, 663, 749
Bme18I GGWCC 3 cut(s) 63, 164, 745
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 3 cut(s) 87, 127, 191
BmgT120I GGNCC 3 cut(s) 63, 164, 745
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 5 cut(s) 182, 489, 574, 663, 749
BmrI ACTGGG 1 cut(s) 593
BmuI ACTGGG 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 865
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 3 cut(s) 182, 489, 574
BsaBI GATNNNNATC 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 508
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 341, 429, 959
Bse118I RCCGGY 1 cut(s) 859
Bse1I ACTGG 3 cut(s) 214, 311, 588
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 2 cut(s) 663, 749
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 2 cut(s) 658, 892
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 209, 341, 429, 959
BseMII CTCAG 2 cut(s) 720, 879
BseNI ACTGG 3 cut(s) 214, 311, 588
BseRI GAGGAG 1 cut(s) 586
BseSI GKGCMC 2 cut(s) 242, 534
BseXI GCAGC 3 cut(s) 370, 589, 661
Bsh1236I CGCG 3 cut(s) 23, 101, 485
Bsh1285I CGRYCG 1 cut(s) 849
BshFI GGCC 6 cut(s) 82, 433, 604, 764, 863, 903
BshNI GGYRCC 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 849
BsiHKCI CYCGRG 3 cut(s) 87, 127, 191
BsiSI CCGG 5 cut(s) 182, 488, 573, 860, 929
BslFI GGGAC 2 cut(s) 119, 817
BslI CCNNNNNNNGG 4 cut(s) 209, 341, 429, 959
BsmFI GGGAC 2 cut(s) 119, 817
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 6 cut(s) 82, 433, 604, 764, 863, 903
BsoBI CYCGRG 3 cut(s) 87, 127, 191
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 3 cut(s) 134, 242, 534
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 6 cut(s) 136, 370, 406, 472, 718, 789
BspACI CCGC 3 cut(s) 101, 200, 845
BspANI GGCC 6 cut(s) 82, 433, 604, 764, 863, 903
BspCNI CTCAG 2 cut(s) 721, 878
BspFNI CGCG 3 cut(s) 23, 101, 485
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 859
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 3 cut(s) 214, 311, 588
BssAI RCCGGY 1 cut(s) 859
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 6 cut(s) 136, 370, 406, 472, 718, 789
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 663, 749
Bst4CI ACNGT 4 cut(s) 36, 53, 60, 344
BstACI GRCGYC 1 cut(s) 702
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 775
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 3 cut(s) 729, 819, 865
BstF5I GGATG 2 cut(s) 658, 892
BstFNI CGCG 3 cut(s) 23, 101, 485
BstHHI GCGC 2 cut(s) 487, 649
BstKTI GATC 6 cut(s) 139, 373, 409, 475, 721, 792
BstMBI GATC 6 cut(s) 136, 370, 406, 472, 718, 789
BstMCI CGRYCG 1 cut(s) 849
BstMWI GCNNNNNNNGC 2 cut(s) 331, 512
BstNI CCWGG 2 cut(s) 663, 749
BstNSI RCATGY 2 cut(s) 393, 469
BstSCI CCNGG 5 cut(s) 180, 487, 572, 661, 747
BstSLI GKGCMC 2 cut(s) 242, 534
BstUI CGCG 3 cut(s) 23, 101, 485
BstV1I GCAGC 3 cut(s) 370, 589, 661
BsuI GTATCC 2 cut(s) 571, 936
BsuRI GGCC 6 cut(s) 82, 433, 604, 764, 863, 903
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 658, 892
BtsI GCAGTG 3 cut(s) 170, 397, 693
BtsIMutI CAGTG 5 cut(s) 65, 170, 397, 581, 693
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 1 cut(s) 861
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 2 cut(s) 487, 649
Cfr10I RCCGGY 1 cut(s) 859
Cfr13I GGNCC 3 cut(s) 63, 164, 745
CseI GACGC 1 cut(s) 678
Csp6I GTAC 7 cut(s) 32, 49, 345, 589, 682, 776, 932
CviAII CATG 3 cut(s) 301, 390, 466
CviQI GTAC 7 cut(s) 32, 49, 345, 589, 682, 776, 932
DdeI CTNAG 3 cut(s) 729, 819, 865
DpnI GATC 6 cut(s) 138, 372, 408, 474, 720, 791
DpnII GATC 6 cut(s) 136, 370, 406, 472, 718, 789
DraIII CACNNNGTG 1 cut(s) 631
DrdI GACNNNNNNGTC 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 393
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 80, 431
Eam1105I GACNNNNNGTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 3 cut(s) 63, 164, 745
Eco57I CTGAAG 2 cut(s) 296, 311
Eco88I CYCGRG 3 cut(s) 87, 127, 191
EcoO109I RGGNCCY 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 661, 747
EcoT14I CCWWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 3 cut(s) 304, 393, 469
FaqI GGGAC 2 cut(s) 119, 817
FatI CATG 3 cut(s) 300, 389, 465
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 2 cut(s) 386, 667
Fnu4HI GCNGC 3 cut(s) 359, 578, 650
FokI GGATG 2 cut(s) 645, 879
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 359, 578, 650
FspBI CTAG 3 cut(s) 218, 509, 807
FspI TGCGCA 1 cut(s) 648
GlaI GCGC 2 cut(s) 486, 648
GluI GCNGC 3 cut(s) 359, 578, 650
HaeIII GGCC 6 cut(s) 82, 433, 604, 764, 863, 903
HapII CCGG 5 cut(s) 182, 488, 573, 860, 929
HgaI GACGC 1 cut(s) 678
HhaI GCGC 2 cut(s) 487, 649
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 3 cut(s) 304, 393, 469
Hin6I GCGC 2 cut(s) 485, 647
HinP1I GCGC 2 cut(s) 485, 647
HincII GTYRAC 3 cut(s) 387, 499, 668
HindII GTYRAC 3 cut(s) 387, 499, 668
HinfI GANTC 1 cut(s) 196
HpaII CCGG 5 cut(s) 182, 488, 573, 860, 929
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 56, 387, 499, 668
Hpy188I TCNGA 4 cut(s) 136, 225, 291, 315
Hpy188III TCNNGA 3 cut(s) 140, 193, 368
Hpy8I GTNNAC 4 cut(s) 56, 387, 499, 668
Hpy99I CGWCG 2 cut(s) 672, 728
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 4 cut(s) 36, 53, 60, 344
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 2 cut(s) 515, 959
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 512
HpyF3I CTNAG 3 cut(s) 729, 819, 865
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 3 cut(s) 304, 393, 469
HspAI GCGC 2 cut(s) 485, 647
KpnI GGTACC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 859
KroNI GCCGGC 1 cut(s) 861
Kzo9I GATC 6 cut(s) 136, 370, 406, 472, 718, 789
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 3 cut(s) 370, 589, 661
MaeI CTAG 3 cut(s) 218, 509, 807
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 5 cut(s) 205, 395, 461, 568, 713
MalI GATC 6 cut(s) 138, 372, 408, 474, 720, 791
MboI GATC 6 cut(s) 136, 370, 406, 472, 718, 789
MboII GAAGA 1 cut(s) 556
MhlI GDGCHC 3 cut(s) 134, 242, 534
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 3 cut(s) 268, 378, 708
MluI ACGCGT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 82
MroNI GCCGGC 1 cut(s) 859
MscI TGGCCA 1 cut(s) 82
MseI TTAA 4 cut(s) 351, 411, 443, 540
MslI CAYNNNNRTG 1 cut(s) 897
Msp20I TGGCCA 1 cut(s) 82
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 5 cut(s) 182, 488, 573, 860, 929
MspR9I CCNGG 5 cut(s) 182, 489, 574, 663, 749
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 2 cut(s) 663, 749
MvnI CGCG 3 cut(s) 23, 101, 485
MwoI GCNNNNNNNGC 2 cut(s) 331, 512
NaeI GCCGGC 1 cut(s) 861
NciI CCSGG 3 cut(s) 182, 489, 574
NdeII GATC 6 cut(s) 136, 370, 406, 472, 718, 789
NgoMIV GCCGGC 1 cut(s) 859
NlaIII CATG 3 cut(s) 304, 393, 469
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 4 cut(s) 395, 461, 568, 713
NsbI TGCGCA 1 cut(s) 648
NspI RCATGY 2 cut(s) 393, 469
NspV TTCGAA 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 191
PciI ACATGT 2 cut(s) 389, 465
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 796
PdiI GCCGGC 1 cut(s) 861
PfeI GAWTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 747
PkrI GCNGC 3 cut(s) 360, 579, 651
PpuMI RGGWCCY 1 cut(s) 745
PscI ACATGT 2 cut(s) 389, 465
Psp5II RGGWCCY 1 cut(s) 745
Psp6I CCWGG 2 cut(s) 661, 747
PspGI CCWGG 2 cut(s) 661, 747
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 63, 164, 745
PspPPI RGGWCCY 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 583
RsaI GTAC 7 cut(s) 33, 50, 346, 590, 683, 777, 933
RsaNI GTAC 7 cut(s) 32, 49, 345, 589, 682, 776, 932
RseI CAYNNNNRTG 1 cut(s) 897
SalI GTCGAC 2 cut(s) 385, 666
SaqAI TTAA 4 cut(s) 351, 411, 443, 540
SatI GCNGC 3 cut(s) 359, 578, 650
Sau3AI GATC 6 cut(s) 136, 370, 406, 472, 718, 789
Sau96I GGNCC 3 cut(s) 63, 164, 745
ScrFI CCNGG 5 cut(s) 182, 489, 574, 663, 749
SduI GDGCHC 3 cut(s) 134, 242, 534
Sfr274I CTCGAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 3 cut(s) 63, 164, 745
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 3 cut(s) 191, 410, 758
SmoI CTYRAG 3 cut(s) 191, 410, 758
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 3 cut(s) 268, 378, 708
SsiI CCGC 3 cut(s) 101, 200, 845
SspMI CTAG 3 cut(s) 218, 509, 807
StyD4I CCNGG 5 cut(s) 180, 487, 572, 661, 747
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 4 cut(s) 36, 53, 60, 344
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 192, 386, 450, 667, 849
TasI AATT 3 cut(s) 268, 378, 708
TatI WGTACW 1 cut(s) 775
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 4 cut(s) 351, 411, 443, 540
Tru9I TTAA 4 cut(s) 351, 411, 443, 540
TscAI CASTG 5 cut(s) 65, 177, 404, 588, 693
TseFI GTSAC 4 cut(s) 395, 461, 568, 713
TseI GCWGC 3 cut(s) 358, 577, 649
Tsp45I GTSAC 4 cut(s) 395, 461, 568, 713
TspDTI ATGAA 1 cut(s) 647
TspRI CASTG 5 cut(s) 65, 177, 404, 588, 693
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 3 cut(s) 63, 164, 745
XceI RCATGY 2 cut(s) 393, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 386, 667
XspI CTAG 3 cut(s) 218, 509, 807
ZraI GACGTC 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.