pycom12401g00030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012401
OG0017129
Physical Location & Seq
Reverse (-)
15606 .. 16790
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12401g00030.2

Sequence Viewer

Length: 978 bp
ATGACACGGTTATTCGATGTTGTACTCCGACTTAAGCCACTACAGTGGCAGAAGATTTTAGAAGATCTTCGTAGCATCAAGGGGATTCTTTCTAAGGTCCAATTGATACTATTCGACGGTTATACTAAGGAGTACTGTATTGCCACTCACCTATTCGCTCGAAGAGTACTGAGCTTAGTTAGACGTTCAGGATTTCTGTCCACTGCCTTATATTTGAAGCAGTGTTCATCTTCACTGATGATCGCTTATGGTGGCGATCGTCGTGAACCTGAACTATTGTCTGTTCCAGTATCTCTGACTCGTCGAGGGTACCCTCGTATAATTCCCGCGTTCCATTGTCGCGTGATCTACGGTGGTGGTCCTCGGGCTGATGAATGCGTTCGGTTTTATCTTTCTGTATTTTCTTTGTATCGGATTGTTATCCTTGCAAAGAAGATATCAAAGAATACTTTTGAACCGTTCATCACTCCAATTAAGGATATCGATCGTGTGCTTAGGTTCGTTGGTGACCTTAAACAGTCTCTTCCTTACCTAGTTCCCTTTACCTTTGTATTCGTTCGCCAAATCTTGTTCAGTTCCATCCAAGCTCGGTTTTGTCTGAATCTTCGCGGAAGAAGAAGAAGCGGTTCACCAGCCACTACATCTGTGGATCCCACCAAATCATTAAACCTGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCGGCCACTACATCGATGAAGAATCTCTCCAAAATCTGCTTTTTGATCAGTGATTCACCGGCCACTACATTCAGGGATCCCACCTTATTCTCAAACCTGGCGGCTCGGTTGATTGGCACTCCGGTAGGCTCATCTTGCATACAAATTCTGGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAAACTTCAGATTGTAAGGCATTTCCACTACATAAGAAAAAACTTGAATTAGATCTTGGAAATGCTCGACTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.41

Weight (kDa)

10.31

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 309
AccII CGCG 3 cut(s) 329, 342, 609
AciI CCGC 5 cut(s) 327, 609, 624, 674, 803
AclWI GGATC 4 cut(s) 644, 657, 773, 786
AcoI YGGCCR 2 cut(s) 705, 762
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 4 cut(s) 24, 134, 168, 311
AflII CTTAAG 2 cut(s) 32, 893
AgsI TTSAA 3 cut(s) 217, 455, 947
AjnI CCWGG 3 cut(s) 669, 798, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 939, 971
AleI CACNNNNGTG 1 cut(s) 43
AloI GAACNNNNNNTCC 2 cut(s) 872, 904
AluBI AGCT 2 cut(s) 174, 587
AluI AGCT 2 cut(s) 174, 587
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 4 cut(s) 644, 657, 773, 786
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 2 cut(s) 705, 762
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 846
Asp700I GAANNNNTTC 3 cut(s) 66, 378, 625
Asp718I GGTACC 1 cut(s) 309
AspS9I GGNCC 4 cut(s) 97, 359, 856, 863
AsuHPI GGTGA 5 cut(s) 140, 518, 621, 693, 750
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 4 cut(s) 97, 359, 856, 863
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BamHI GGATCC 2 cut(s) 649, 778
BanI GGYRCC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 664
BccI CCATC 1 cut(s) 587
BciT130I CCWGG 3 cut(s) 671, 800, 861
BclI TGATCA 2 cut(s) 690, 747
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 32, 893
BglII AGATCT 2 cut(s) 64, 952
BisI GCNGC 3 cut(s) 675, 678, 804
BlsI GCNGC 3 cut(s) 676, 679, 805
BmcAI AGTACT 2 cut(s) 134, 168
Bme1390I CCNGG 3 cut(s) 671, 800, 861
Bme18I GGWCC 4 cut(s) 97, 359, 856, 863
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 4 cut(s) 97, 359, 856, 863
BmiI GGNNCC 5 cut(s) 311, 651, 780, 857, 858
BmrFI CCNGG 3 cut(s) 671, 800, 861
BmsI GCATC 2 cut(s) 84, 878
Bpu10I CCTNAGC 1 cut(s) 494
Bsa29I ATCGAT 2 cut(s) 483, 716
BsaBI GATNNNNATC 2 cut(s) 419, 483
BsaJI CCNNGG 2 cut(s) 362, 859
BsaWI WCCGGW 1 cut(s) 823
Bse118I RCCGGY 2 cut(s) 703, 760
Bse1I ACTGG 1 cut(s) 287
Bse8I GATNNNNATC 2 cut(s) 419, 483
BseBI CCWGG 3 cut(s) 671, 800, 861
BseCI ATCGAT 2 cut(s) 483, 716
BseDI CCNNGG 2 cut(s) 362, 859
BseGI GGATG 2 cut(s) 579, 869
BseJI GATNNNNATC 2 cut(s) 419, 483
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 664
Bsh1236I CGCG 3 cut(s) 329, 342, 609
Bsh1285I CGRYCG 2 cut(s) 259, 487
BshFI GGCC 2 cut(s) 707, 764
BshNI GGYRCC 1 cut(s) 309
BshVI ATCGAT 2 cut(s) 483, 716
BsiEI CGRYCG 2 cut(s) 259, 487
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 704, 761, 824
BslFI GGGAC 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 2 cut(s) 707, 764
BsoBI CYCGRG 1 cut(s) 363
BspACI CCGC 5 cut(s) 327, 609, 624, 674, 803
BspANI GGCC 2 cut(s) 707, 764
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 2 cut(s) 483, 716
BspFNI CGCG 3 cut(s) 329, 342, 609
BspLI GGNNCC 5 cut(s) 311, 651, 780, 857, 858
BspPI GGATC 4 cut(s) 644, 657, 773, 786
BspT107I GGYRCC 1 cut(s) 309
BspTI CTTAAG 2 cut(s) 32, 893
BsrFI RCCGGY 2 cut(s) 703, 760
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 2 cut(s) 703, 760
BssECI CCNNGG 2 cut(s) 362, 859
Bst2UI CCWGG 3 cut(s) 671, 800, 861
Bst4CI ACNGT 7 cut(s) 9, 45, 119, 137, 353, 459, 519
Bst6I CTCTTC 2 cut(s) 157, 528
BstAFI CTTAAG 2 cut(s) 32, 893
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 5 cut(s) 93, 126, 170, 175, 494
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 2 cut(s) 579, 869
BstFNI CGCG 3 cut(s) 329, 342, 609
BstMAI GTCTC 1 cut(s) 525
BstMCI CGRYCG 2 cut(s) 259, 487
BstMWI GCNNNNNNNGC 1 cut(s) 837
BstNI CCWGG 3 cut(s) 671, 800, 861
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 669, 798, 859
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 3 cut(s) 329, 342, 609
BstV1I GCAGC 1 cut(s) 664
BstX2I RGATCY 4 cut(s) 64, 649, 778, 952
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 4 cut(s) 64, 649, 778, 952
Bsu15I ATCGAT 2 cut(s) 483, 716
BsuRI GGCC 2 cut(s) 707, 764
BsuTUI ATCGAT 2 cut(s) 483, 716
BtsCI GGATG 2 cut(s) 579, 869
BtsI GCAGTG 2 cut(s) 201, 227
BtsIMutI CAGTG 6 cut(s) 50, 201, 227, 233, 700, 757
Cac8I GCNNGC 1 cut(s) 682
CaiI CAGNNNCTG 1 cut(s) 866
Cfr10I RCCGGY 2 cut(s) 703, 760
Cfr13I GGNCC 4 cut(s) 97, 359, 856, 863
ClaI ATCGAT 2 cut(s) 483, 716
Csp6I GTAC 4 cut(s) 23, 133, 167, 310
CviQI GTAC 4 cut(s) 23, 133, 167, 310
DdeI CTNAG 5 cut(s) 93, 126, 170, 175, 494
EaeI YGGCCR 2 cut(s) 705, 762
Eam1104I CTCTTC 2 cut(s) 157, 528
EarI CTCTTC 2 cut(s) 157, 528
Eco32I GATATC 2 cut(s) 438, 481
Eco47I GGWCC 4 cut(s) 97, 359, 856, 863
Eco57I CTGAAG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 506
EcoO109I RGGNCCY 2 cut(s) 856, 863
EcoO65I GGTNACC 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 669, 798, 859
EcoRV GATATC 2 cut(s) 438, 481
FaiI YATR 6 cut(s) 123, 211, 249, 320, 842, 933
FaqI GGGAC 1 cut(s) 842
FauI CCCGC 1 cut(s) 334
FbaI TGATCA 2 cut(s) 690, 747
Fnu4HI GCNGC 3 cut(s) 675, 678, 804
FokI GGATG 2 cut(s) 566, 856
Fsp4HI GCNGC 3 cut(s) 675, 678, 804
FspBI CTAG 1 cut(s) 533
GluI GCNGC 3 cut(s) 675, 678, 804
HaeIII GGCC 2 cut(s) 707, 764
HapII CCGG 3 cut(s) 704, 761, 824
HinfI GANTC 7 cut(s) 85, 298, 601, 698, 724, 755, 969
HpaII CCGG 3 cut(s) 704, 761, 824
HphI GGTGA 5 cut(s) 140, 518, 621, 693, 750
Hpy166II GTNNAC 3 cut(s) 201, 266, 629
Hpy188I TCNGA 5 cut(s) 29, 297, 414, 600, 910
Hpy188III TCNNGA 2 cut(s) 189, 263
Hpy8I GTNNAC 3 cut(s) 201, 266, 629
Hpy99I CGWCG 3 cut(s) 119, 264, 306
HpyCH4III ACNGT 7 cut(s) 9, 45, 119, 137, 353, 459, 519
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 428, 840, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 837
HpyF3I CTNAG 5 cut(s) 93, 126, 170, 175, 494
HpySE526I ACGT 1 cut(s) 184
KflI GGGWCCC 1 cut(s) 856
KpnI GGTACC 1 cut(s) 313
Ksp22I TGATCA 2 cut(s) 690, 747
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 2 cut(s) 84, 878
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 506
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 4 cut(s) 64, 649, 778, 952
MluCI AATT 5 cut(s) 101, 321, 471, 846, 947
MlyI GAGTC 2 cut(s) 292, 963
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 299, 324, 372
MroXI GAANNNNTTC 3 cut(s) 66, 378, 625
MseI TTAA 5 cut(s) 33, 474, 513, 665, 894
MslI CAYNNNNRTG 1 cut(s) 43
MspCI CTTAAG 2 cut(s) 32, 893
MspI CCGG 3 cut(s) 704, 761, 824
MspR9I CCNGG 3 cut(s) 671, 800, 861
MunI CAATTG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 3 cut(s) 671, 800, 861
MvnI CGCG 3 cut(s) 329, 342, 609
MwoI GCNNNNNNNGC 1 cut(s) 837
NlaIV GGNNCC 5 cut(s) 311, 651, 780, 857, 858
NmuCI GTSAC 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 43
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 3 cut(s) 66, 378, 625
PfeI GAWTC 5 cut(s) 85, 601, 698, 724, 755
PkrI GCNGC 3 cut(s) 676, 679, 805
Ple19I CGATCG 2 cut(s) 259, 487
PleI GAGTC 2 cut(s) 292, 963
PpsI GAGTC 2 cut(s) 292, 963
PpuMI RGGWCCY 2 cut(s) 856, 863
Psp5II RGGWCCY 2 cut(s) 856, 863
Psp6I CCWGG 3 cut(s) 669, 798, 859
PspEI GGTNACC 1 cut(s) 506
PspGI CCWGG 3 cut(s) 669, 798, 859
PspN4I GGNNCC 5 cut(s) 311, 651, 780, 857, 858
PspPI GGNCC 4 cut(s) 97, 359, 856, 863
PspPPI RGGWCCY 2 cut(s) 856, 863
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 4 cut(s) 64, 649, 778, 952
PvuI CGATCG 2 cut(s) 259, 487
RsaI GTAC 4 cut(s) 24, 134, 168, 311
RsaNI GTAC 4 cut(s) 23, 133, 167, 310
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 5 cut(s) 33, 474, 513, 665, 894
SatI GCNGC 3 cut(s) 675, 678, 804
Sau96I GGNCC 4 cut(s) 97, 359, 856, 863
ScaI AGTACT 2 cut(s) 134, 168
SchI GAGTC 2 cut(s) 292, 963
ScrFI CCNGG 3 cut(s) 671, 800, 861
SfaNI GCATC 2 cut(s) 84, 878
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 4 cut(s) 97, 359, 856, 863
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 32, 893
SmoI CTYRAG 2 cut(s) 32, 893
Sse9I AATT 5 cut(s) 101, 321, 471, 846, 947
SsiI CCGC 5 cut(s) 327, 609, 624, 674, 803
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 669, 798, 859
TaaI ACNGT 7 cut(s) 9, 45, 119, 137, 353, 459, 519
TaiI ACGT 1 cut(s) 187
TaqI TCGA 7 cut(s) 15, 114, 160, 304, 483, 716, 967
TasI AATT 5 cut(s) 101, 321, 471, 846, 947
TatI WGTACW 3 cut(s) 22, 132, 166
TauI GCSGC 2 cut(s) 677, 806
TfiI GAWTC 5 cut(s) 85, 601, 698, 724, 755
Tru1I TTAA 5 cut(s) 33, 474, 513, 665, 894
Tru9I TTAA 5 cut(s) 33, 474, 513, 665, 894
TscAI CASTG 6 cut(s) 50, 208, 227, 240, 700, 757
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 4 cut(s) 216, 387, 451, 734
TspRI CASTG 6 cut(s) 50, 208, 227, 240, 700, 757
Vha464I CTTAAG 2 cut(s) 32, 893
VpaK11BI GGWCC 4 cut(s) 97, 359, 856, 863
XapI RAATTY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmnI GAANNNNTTC 3 cut(s) 66, 378, 625
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 2 cut(s) 134, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.