ATMG01410

BEST Arabidopsis thaliana protein match is Mitovirus RNA-dependent RNA polymerase (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017129
Physical Location & Seq
Reverse (-)
366086 .. 366700
615 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01410.1

Sequence Viewer

Length: 615 bp
ATGTTTGGGGGGCGGAGAAGACGTCTCCCCCAAGATGGGACTTTTAACCAAACACAGCCTTTTGATCGACTGGTTGGCAGTAGGCACTCTTTCTCCTTTGACTTAAAGTCGGCCACTGATCGTTGGCCTTTAGTCTTTCTGTTTGAGGTGGTGCAGTACCTATTTGACCGCTCCTTTGCCTCAAGTGTGGTTAATTCTGCATTTGCATGCAATATCTTTGAGGTGCCTTTTGTTAAACTTAAACGAAGGTTCTCTCAAGTATGCTTTGTGGCAGGGCAGCCATTGGGATATCACGGTTCTTGGCCTACTTTCGCGCTATCACACCATATATTAGTGTGGTGGTGTGCGAAACAGGTGCATCCTGGTGTACGCTTTACATCGTACGCGGTACTCGGTGATGATGTTGTCATTGCCGATCAGGAAGTCGCCAAAGTCTATGAATCTGCTTTGGGTGGATTGGGGGTCAAAATAAGTTATCAAAAGTCCTTGATCCCCATTCAGGTTTTGCTGAGTTTGCTAAATGCTTCAGGGTTAGGGAATCTCGTATTAAAGAGAGAGATCTTTCCCCGAGAGTCAGGAGTTCTTTCCCTAATGTCAGTTCCTTCGCTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitovir_RNA_pol

Protein Analysis

204

Amino Acids

22.81

Weight (kDa)

9.58

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mitovir_RNA_pol PF05919 7 - 164 1.2e-44 Mitovirus RNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 223
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 2 cut(s) 314, 386
AciI CCGC 3 cut(s) 13, 169, 386
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 4 cut(s) 158, 369, 383, 390
AfiI CCNNNNNNNGG 3 cut(s) 35, 36, 499
AhdI GACNNNNNGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 3 cut(s) 111, 125, 302
ApeKI GCWGC 1 cut(s) 277
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 407
AsuNHI GCTAGC 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 567
BanI GGYRCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 608, 613
BglII AGATCT 1 cut(s) 558
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 166, 240
BsaHI GRCGYC 1 cut(s) 22
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 77, 107
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 36, 499
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 3 cut(s) 35, 36, 499
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 314, 386
BshFI GGCC 3 cut(s) 113, 127, 304
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 567
BsiWI CGTACG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 35, 36, 499
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 3 cut(s) 113, 127, 304
BsoBI CYCGRG 1 cut(s) 567
Bsp143I GATC 5 cut(s) 64, 118, 415, 489, 558
BspACI CCGC 3 cut(s) 13, 169, 386
BspANI GGCC 3 cut(s) 113, 127, 304
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 2 cut(s) 314, 386
BspLI GGNNCC 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 75
BssMI GATC 5 cut(s) 64, 118, 415, 489, 558
BssNI GRCGYC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 208, 609
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 2 cut(s) 314, 386
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 5 cut(s) 67, 121, 418, 492, 561
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 5 cut(s) 64, 118, 415, 489, 558
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 2 cut(s) 314, 386
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BsuRI GGCC 3 cut(s) 113, 127, 304
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 208, 609
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 4 cut(s) 157, 368, 382, 389
CviAII CATG 1 cut(s) 207
CviJI RGCY 6 cut(s) 58, 113, 127, 280, 304, 611
CviKI_1 RGCY 6 cut(s) 58, 113, 127, 280, 304, 611
CviQI GTAC 4 cut(s) 157, 368, 382, 389
DdeI CTNAG 1 cut(s) 509
DpnI GATC 5 cut(s) 66, 120, 417, 491, 560
DpnII GATC 5 cut(s) 64, 118, 415, 489, 558
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 111
Eam1105I GACNNNNNGTC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 28
Eco32I GATATC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 1 cut(s) 210
FaiI YATR 5 cut(s) 208, 262, 327, 329, 438
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 608, 613
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 3 cut(s) 113, 127, 304
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 1 cut(s) 210
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 440, 538, 572
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 419, 576
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 240, 612
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 154, 200, 206, 210, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 210
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 5 cut(s) 64, 118, 415, 489, 558
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 9 cut(s) 56, 258, 338, 348, 375, 404, 485, 513, 561
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 367
MaeI CTAG 2 cut(s) 608, 613
MaeII ACGT 1 cut(s) 22
MalI GATC 5 cut(s) 66, 120, 417, 491, 560
MbiI CCGCTC 1 cut(s) 171
MboI GATC 5 cut(s) 64, 118, 415, 489, 558
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 558
MluCI AATT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 3 cut(s) 139, 190, 214
MseI TTAA 6 cut(s) 45, 104, 192, 234, 240, 548
MslI CAYNNNNRTG 2 cut(s) 205, 363
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 2 cut(s) 314, 386
MwoI GCNNNNNNNGC 1 cut(s) 514
NdeII GATC 5 cut(s) 64, 118, 415, 489, 558
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 1 cut(s) 210
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 440, 538
Pfl23II CGTACG 1 cut(s) 381
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspLI CGTACG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 4 cut(s) 158, 369, 383, 390
RsaNI GTAC 4 cut(s) 157, 368, 382, 389
RseI CAYNNNNRTG 2 cut(s) 205, 363
SaqAI TTAA 6 cut(s) 45, 104, 192, 234, 240, 548
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 5 cut(s) 64, 118, 415, 489, 558
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 363
SetI ASST 7 cut(s) 25, 150, 162, 225, 251, 357, 504
SfaNI GCATC 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 205, 363
SmlI CTYRAG 2 cut(s) 181, 255
SmoI CTYRAG 2 cut(s) 181, 255
SphI GCATGC 1 cut(s) 210
Sse9I AATT 1 cut(s) 193
SsiI CCGC 3 cut(s) 13, 169, 386
SspMI CTAG 2 cut(s) 608, 613
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 193
TfiI GAWTC 2 cut(s) 440, 538
Tru1I TTAA 6 cut(s) 45, 104, 192, 234, 240, 548
Tru9I TTAA 6 cut(s) 45, 104, 192, 234, 240, 548
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 1 cut(s) 121
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 608, 613
ZraI GACGTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.