ATMG01110

Mitovirus RNA-dependent RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017129
Physical Location & Seq
Reverse (-)
283034 .. 283789
756 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01110.1

Sequence Viewer

Length: 756 bp
ATGTCTGTTCTGAGGCGTATTCCACAAGACGGTACCTTCCATCAAGAAGGTCCTATCCATCGTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGGCCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGTCAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTGTGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCATGCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGCTTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTGATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTCGCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCAGTATCTGCGAAAGCTGTGCTTGAGAGCTACTTCCTCGTTGGTACTCAGCAGTTGGCCTATAAGTACAAGTTAAGTCCTAAGACTTGTTTAAGGTTAAATAAAGCTGGATACCGCGTGCTAGGACAAATGGACACTACACTAAGGCCCTATCCCGGCGTTTTAGTCGGATTCAGGCGTTATCTAGTAAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitovir_RNA_pol

Protein Analysis

251

Amino Acids

28.11

Weight (kDa)

9.45

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mitovir_RNA_pol PF05919 2 - 197 2.7e-52 Mitovirus RNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 2 cut(s) 32, 197
AccB7I CCANNNNNTGG 1 cut(s) 64
AccII CGCG 2 cut(s) 308, 675
AciI CCGC 2 cut(s) 523, 673
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 4 cut(s) 34, 437, 604, 626
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 5 cut(s) 29, 64, 120, 123, 713
AgsI TTSAA 1 cut(s) 226
AhdI GACNNNNNGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 5 cut(s) 148, 575, 588, 665, 750
AluI AGCT 5 cut(s) 148, 575, 588, 665, 750
Alw26I GTCTC 3 cut(s) 67, 361, 491
AlwNI CAGNNNCTG 1 cut(s) 566
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 3 cut(s) 125, 615, 704
ApeKI GCWGC 2 cut(s) 110, 338
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 50, 126, 705
AsuC2I CCSGG 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 50
BanI GGYRCC 2 cut(s) 32, 197
BanII GRGCYC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 97, 350
BccI CCATC 3 cut(s) 48, 66, 169
BceAI ACGGC 2 cut(s) 257, 304
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 295
BciVI GTATCC 1 cut(s) 662
BcnI CCSGG 1 cut(s) 714
BcoDI GTCTC 3 cut(s) 67, 361, 491
BfaI CTAG 2 cut(s) 680, 743
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 257
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 2 cut(s) 111, 339
BlsI GCNGC 2 cut(s) 112, 340
Bme1390I CCNGG 2 cut(s) 295, 714
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 504
BmgT120I GGNCC 3 cut(s) 50, 126, 705
BmiI GGNNCC 3 cut(s) 34, 199, 292
BmrFI CCNGG 2 cut(s) 295, 714
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 188, 442, 466
BmuI ACTGGG 1 cut(s) 554
Bpu10I CCTNAGC 2 cut(s) 202, 429
BpuEI CTTGAG 3 cut(s) 124, 530, 602
BpuMI CCSGG 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 64, 120, 123, 713
Bse1I ACTGG 3 cut(s) 134, 241, 560
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 294
BseLI CCNNNNNNNGG 5 cut(s) 29, 64, 120, 123, 713
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 486, 620
BseNI ACTGG 3 cut(s) 134, 241, 560
BseXI GCAGC 2 cut(s) 97, 350
Bsh1236I CGCG 2 cut(s) 308, 675
Bsh1285I CGRYCG 2 cut(s) 121, 418
BshFI GGCC 3 cut(s) 127, 617, 706
BshNI GGYRCC 2 cut(s) 32, 197
BsiEI CGRYCG 2 cut(s) 121, 418
BsiSI CCGG 1 cut(s) 714
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 29, 64, 120, 123, 713
BsmAI GTCTC 3 cut(s) 67, 361, 491
BsmBI CGTCTC 2 cut(s) 67, 491
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 127, 617, 706
Bso31I GGTCTC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 118, 415
BspACI CCGC 2 cut(s) 523, 673
BspANI GGCC 3 cut(s) 127, 617, 706
BspCNI CTCAG 2 cut(s) 487, 619
BspFNI CGCG 2 cut(s) 308, 675
BspLI GGNNCC 3 cut(s) 34, 199, 292
BspMI ACCTGC 1 cut(s) 257
BspT107I GGYRCC 2 cut(s) 32, 197
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 134, 241, 560
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 118, 415
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 32, 440
BstACI GRCGYC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 157, 677
BstDEI CTNAG 7 cut(s) 11, 202, 429, 495, 606, 639, 701
BstFNI CGCG 2 cut(s) 308, 675
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 121, 418
BstMAI GTCTC 3 cut(s) 67, 361, 491
BstMBI GATC 2 cut(s) 118, 415
BstMCI CGRYCG 2 cut(s) 121, 418
BstMWI GCNNNNNNNGC 2 cut(s) 305, 347
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 2 cut(s) 293, 712
BstUI CGCG 2 cut(s) 308, 675
BstV1I GCAGC 2 cut(s) 97, 350
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 3 cut(s) 127, 617, 706
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 157, 677
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 50, 126, 705
CseI GACGC 1 cut(s) 84
Csp6I GTAC 4 cut(s) 33, 436, 603, 625
CviAII CATG 3 cut(s) 216, 245, 320
CviQI GTAC 4 cut(s) 33, 436, 603, 625
DdeI CTNAG 7 cut(s) 11, 202, 429, 495, 606, 639, 701
DpnI GATC 2 cut(s) 120, 417
DpnII GATC 2 cut(s) 118, 415
DriI GACNNNNNGTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 109
EcoO109I RGGNCCY 2 cut(s) 50, 705
EcoRII CCWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 301
Esp3I CGTCTC 2 cut(s) 67, 491
FaeI CATG 3 cut(s) 219, 248, 323
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 215, 244, 319
Fnu4HI GCNGC 2 cut(s) 111, 339
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 2 cut(s) 111, 339
FspBI CTAG 2 cut(s) 680, 743
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 111, 339
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 127, 617, 706
HapII CCGG 1 cut(s) 714
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 3 cut(s) 219, 248, 323
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 1 cut(s) 729
HpaII CCGG 1 cut(s) 714
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 5 cut(s) 12, 363, 475, 496, 728
Hpy188III TCNNGA 3 cut(s) 44, 377, 509
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 41, 46, 541
HpyCH4III ACNGT 2 cut(s) 32, 440
HpyCH4V TGCA 3 cut(s) 186, 266, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 347
HpyF3I CTNAG 7 cut(s) 11, 202, 429, 495, 606, 639, 701
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 3 cut(s) 219, 248, 323
HspAI GCGC 1 cut(s) 108
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 118, 415
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 97, 350
LweI GCATC 3 cut(s) 188, 442, 466
MaeI CTAG 2 cut(s) 680, 743
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 120, 417
MboI GATC 2 cut(s) 118, 415
MhlI GDGCHC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 706
MnlI CCTC 3 cut(s) 6, 366, 605
MseI TTAA 4 cut(s) 534, 632, 650, 656
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 2 cut(s) 295, 714
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 2 cut(s) 308, 675
MwoI GCNNNNNNNGC 2 cut(s) 305, 347
NciI CCSGG 1 cut(s) 714
NdeII GATC 2 cut(s) 118, 415
NlaIII CATG 3 cut(s) 219, 248, 323
NlaIV GGNNCC 3 cut(s) 34, 199, 292
PcsI WCGNNNNNNNCGW 2 cut(s) 179, 411
PfeI GAWTC 1 cut(s) 729
PflFI GACNNNGTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 2 cut(s) 112, 340
Ple19I CGATCG 2 cut(s) 121, 418
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 3 cut(s) 34, 199, 292
PspPI GGNCC 3 cut(s) 50, 126, 705
PspPPI RGGWCCY 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 404
PvuI CGATCG 2 cut(s) 121, 418
RsaI GTAC 4 cut(s) 34, 437, 604, 626
RsaNI GTAC 4 cut(s) 33, 436, 603, 625
SaqAI TTAA 4 cut(s) 534, 632, 650, 656
SatI GCNGC 2 cut(s) 111, 339
Sau3AI GATC 2 cut(s) 118, 415
Sau96I GGNCC 3 cut(s) 50, 126, 705
ScrFI CCNGG 2 cut(s) 295, 714
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 3 cut(s) 188, 442, 466
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 103, 509, 581
SmoI CTYRAG 3 cut(s) 103, 509, 581
SsiI CCGC 2 cut(s) 523, 673
SspMI CTAG 2 cut(s) 680, 743
StyD4I CCNGG 2 cut(s) 293, 712
TaaI ACNGT 2 cut(s) 32, 440
TaqI TCGA 2 cut(s) 378, 545
TaqII GACCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 1 cut(s) 729
Tru1I TTAA 4 cut(s) 534, 632, 650, 656
Tru9I TTAA 4 cut(s) 534, 632, 650, 656
TseI GCWGC 2 cut(s) 110, 338
TspGWI ACGGA 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 404
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 50
XspI CTAG 2 cut(s) 680, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.