ATMG00490

Mitovirus RNA-dependent RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017129
Physical Location & Seq
Forward (+)
130817 .. 131140
324 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00490.1

Sequence Viewer

Length: 324 bp
ATGGCTGTTCGCTGTAGCAAAATTCAACGAACCGACGGGCGTCCCGGACATAGCCTTCAACCCGCAAAGGTTAGCTTTGTTGCTGGACAACCACTAGGGTACTATTCTTCCTGGCCCCTCTTCGCCCTATCACATCACATGGTGGTGTGGTATGCGGCAGAACATGTCTATCCTTCCTCCTTCTTCTTTCAGTCGAAACTTCCTCCTAGTGAGGTGTTCGCCTATCCAGGTATGGAAGTATTCAATGAATACACTCTGTACCATGCATGGGTGGATGAAGCTTTATCTGGAGTATCAAAGATGGAATTGTATGCTAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mitovir_RNA_pol

Protein Analysis

107

Amino Acids

12.12

Weight (kDa)

6.96

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mitovir_RNA_pol PF05919 22 - 58 1.5e-11 Mitovirus RNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07749 ATMG00490 ATMG01110 ATMG01410
pyrus_communis pycom12401g00030 pycom461g00360
rosa_chinensis RchiOBHm_MTg0498601
rosa_laevigata RLG00000000451
rosa_multiflora Rmu_co8289347.1_g000001
rosa_roxburghii Rroxscaffold_2G00119420 Rroxscaffold_5G00338830
rosa_samantha Rh4AG240200 Rh4BG243400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 155
AcsI RAATTY 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 2 cut(s) 101, 260
AfiI CCNNNNNNNGG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 26, 59, 244
AjnI CCWGG 2 cut(s) 110, 226
AluBI AGCT 2 cut(s) 75, 281
AluI AGCT 2 cut(s) 75, 281
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 45
BccI CCATC 1 cut(s) 295
BciT130I CCWGG 2 cut(s) 112, 228
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 2 cut(s) 95, 207
BfmI CTRYAG 1 cut(s) 13
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 3 cut(s) 45, 112, 228
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 3 cut(s) 45, 112, 228
BoxI GACNNNNGTC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 112, 228
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 268
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 115
BspACI CCGC 2 cut(s) 63, 155
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 112, 228
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 315, 321
BstF5I GGATG 1 cut(s) 280
BstNI CCWGG 2 cut(s) 112, 228
BstNSI RCATGY 1 cut(s) 167
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 43, 110, 226
BstSFI CTRYAG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 100, 259
CviAII CATG 4 cut(s) 139, 164, 263, 267
CviJI RGCY 6 cut(s) 5, 54, 75, 115, 281, 320
CviKI_1 RGCY 6 cut(s) 5, 54, 75, 115, 281, 320
CviQI GTAC 2 cut(s) 100, 259
DdeI CTNAG 2 cut(s) 315, 321
DraIII CACNNNGTG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 110, 226
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 4 cut(s) 142, 167, 266, 270
FaiI YATR 8 cut(s) 51, 140, 153, 165, 233, 264, 268, 312
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 27
FatI CATG 4 cut(s) 138, 163, 262, 266
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 95, 207
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 4 cut(s) 142, 167, 266, 270
HindIII AAGCTT 1 cut(s) 279
HpaII CCGG 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 65, 183, 190
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 315, 321
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 4 cut(s) 142, 167, 266, 270
LpnPI CCDG 7 cut(s) 58, 69, 97, 124, 213, 240, 273
MaeI CTAG 2 cut(s) 95, 207
MboII GAAGA 3 cut(s) 99, 112, 175
MluCI AATT 2 cut(s) 21, 305
MnlI CCTC 4 cut(s) 128, 187, 205, 213
Mph1103I ATGCAT 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 3 cut(s) 45, 112, 228
MvaI CCWGG 2 cut(s) 112, 228
NciI CCSGG 1 cut(s) 45
NlaIII CATG 4 cut(s) 142, 167, 266, 270
NlaIV GGNNCC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 1 cut(s) 157
PscI ACATGT 1 cut(s) 163
PshAI GACNNNNGTC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 110, 226
PspGI CCWGG 2 cut(s) 110, 226
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 114
RsaI GTAC 2 cut(s) 101, 260
RsaNI GTAC 2 cut(s) 100, 259
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 45, 112, 228
SetI ASST 5 cut(s) 72, 77, 216, 232, 283
SfcI CTRYAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 21, 305
SsiI CCGC 2 cut(s) 63, 155
SspMI CTAG 2 cut(s) 95, 207
StyD4I CCNGG 3 cut(s) 43, 110, 226
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 21, 305
TauI GCSGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 261, 291
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 95, 207
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.