AT2G10940

Hydrophobic seed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014898
Physical Location & Seq
Reverse (-)
4310321 .. 4312162
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G10940.2

Sequence Viewer

Length: 876 bp
ATGGACTCCTCCAAACTCTCATCTCTCTCTCTTTGCCTCTTCCTCATTTGCATTATCTATCTCCCCCAACATTCTCTCGCATGCGGCTCTTGCAACCCACGGAAGGGCGGAAAGCACTCCCCTAAAGCCCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCATCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACAGTCCCTAAGCTACCCGTTCCCCCGGTAACTGTACCTAAGCTACCCGTTCCTCCAGTGACCGTCCCTAAGCTACCCCTTCCTCCGATTTCAGGGCTACCCATACCTCCAGTGGTAGGTCCCAATCTGCCATTGCCGCCTTTGCCAATTGTAGGTCCTATTCTTCCACCGGGAACAACCCCACCAGCCACAGGAGGGAAGGACTGTCCTCCACCGCCAGGGAGCGTAAAGCCACCATCAGGGGGCGGGAAGGCGACATGTCCAATAGACACGCTGAAGTTAGGTGCTTGCGTCGACTTGTTGGGAGGTTTAGTAAAGATAGGGCTTGGGGATCCAGCAGTTAACAAATGTTGTCCGTTACTTAAAGGCCTCGTTGAAGTCGAAGCCGCGGCTTGTCTCTGCACTACCCTCAAGCTCAAAGCTCTTGACCTCAATCTTTATGTCCCTGTTGCTCTTCAGCTTCTCCTTACCTGTGGCAAAAATCCACCTCCGGGCTACACTTGTTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

291

Amino Acids

29.65

Weight (kDa)

9.52

Isoelectric Point (pI)

70.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 207 - 290 1.8e-27 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 208 - 289 2.4e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10940 AT2G10940
fragaria_vesca FvH4_1g02570
malus_domestica MD02G1023200.v1.1 MD15G1166100.v1.1
prunus_persica Prupe.7G248900_v2.0.a1 Prupe.7G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0087601
rosa_laevigata RLG00000015883
rosa_multiflora Rmu_sc0002299.1_g000028
rosa_rugosa Rorug01G0476900
rosa_samantha Rh2AG030500 Rh2BG030300 Rh2CG030700 Rh2DG030500
rosa_wichuraiana Rw2G002420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 752
AciI CCGC 7 cut(s) 84, 108, 500, 578, 609, 750, 752
AclWI GGATC 2 cut(s) 689, 702
AcuI CTGAAG 2 cut(s) 659, 803
AfaI GTAC 2 cut(s) 279, 399
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 740
AjnI CCWGG 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 764
AlwI GGATC 2 cut(s) 689, 702
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 730
AspS9I GGNCC 2 cut(s) 482, 518
AsuC2I CCSGG 3 cut(s) 389, 534, 855
AsuHPI GGTGA 3 cut(s) 163, 193, 223
AvaII GGWCC 2 cut(s) 482, 518
BamHI GGATCC 1 cut(s) 694
BccI CCATC 2 cut(s) 254, 607
BciT130I CCWGG 1 cut(s) 582
BcnI CCSGG 3 cut(s) 389, 534, 855
BcoDI GTCTC 1 cut(s) 764
BisI GCNGC 4 cut(s) 85, 500, 750, 753
BlsI GCNGC 4 cut(s) 86, 501, 751, 754
Bme1390I CCNGG 4 cut(s) 389, 534, 582, 855
Bme18I GGWCC 2 cut(s) 482, 518
BmgT120I GGNCC 2 cut(s) 482, 518
BmiI GGNNCC 2 cut(s) 484, 696
BmrFI CCNGG 4 cut(s) 389, 534, 582, 855
BpmI CTGGAG 4 cut(s) 312, 342, 402, 456
Bpu10I CCTNAGC 9 cut(s) 132, 162, 192, 222, 252, 282, 372, 402, 432
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 3 cut(s) 389, 534, 855
BsaJI CCNNGG 4 cut(s) 98, 387, 581, 750
BsaWI WCCGGW 3 cut(s) 148, 178, 208
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bse1I ACTGG 8 cut(s) 140, 170, 200, 269, 329, 359, 419, 473
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 98, 387, 581, 750
BseGI GGATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 494
BseNI ACTGG 8 cut(s) 140, 170, 200, 269, 329, 359, 419, 473
BsgI GTGCAG 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 1 cut(s) 732
BsiSI CCGG 6 cut(s) 149, 179, 209, 389, 533, 854
BsmAI GTCTC 1 cut(s) 764
BsnI GGCC 1 cut(s) 732
Bsp143I GATC 1 cut(s) 694
BspACI CCGC 7 cut(s) 84, 108, 500, 578, 609, 750, 752
BspANI GGCC 1 cut(s) 732
BspFNI CGCG 1 cut(s) 752
BspLI GGNNCC 2 cut(s) 484, 696
BspPI GGATC 2 cut(s) 689, 702
BspQI GCTCTTC 1 cut(s) 822
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 8 cut(s) 140, 170, 200, 269, 329, 359, 419, 473
BssECI CCNNGG 4 cut(s) 98, 387, 581, 750
BssMI GATC 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 44, 822
BstC8I GCNNGC 2 cut(s) 82, 652
BstDEI CTNAG 9 cut(s) 132, 162, 192, 222, 252, 282, 372, 402, 432
BstDSI CCRYGG 2 cut(s) 98, 750
BstEII GGTNACC 3 cut(s) 151, 181, 211
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 3 cut(s) 90, 499, 505
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 84, 624
BstPI GGTNACC 3 cut(s) 151, 181, 211
BstSCI CCNGG 4 cut(s) 387, 532, 580, 853
BstUI CGCG 1 cut(s) 752
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 2 cut(s) 98, 750
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 5 cut(s) 276, 336, 366, 426, 480
Cac8I GCNNGC 2 cut(s) 82, 652
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 482, 518
Cfr42I CCGCGG 1 cut(s) 753
CseI GACGC 1 cut(s) 643
Csp6I GTAC 2 cut(s) 278, 398
CviAII CATG 2 cut(s) 81, 621
CviQI GTAC 2 cut(s) 278, 398
DdeI CTNAG 9 cut(s) 132, 162, 192, 222, 252, 282, 372, 402, 432
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 44, 822
EarI CTCTTC 2 cut(s) 44, 822
EciI GGCGGA 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 482, 518
Eco57I CTGAAG 2 cut(s) 659, 803
Eco91I GGTNACC 3 cut(s) 151, 181, 211
EcoO109I RGGNCCY 2 cut(s) 482, 518
EcoO65I GGTNACC 3 cut(s) 151, 181, 211
EcoRII CCWGG 1 cut(s) 580
FaeI CATG 2 cut(s) 84, 624
FaiI YATR 6 cut(s) 82, 467, 622, 804, 872, 874
FatI CATG 2 cut(s) 80, 620
FauI CCCGC 1 cut(s) 602
FauNDI CATATG 1 cut(s) 872
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 85, 500, 750, 753
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 4 cut(s) 85, 500, 750, 753
GluI GCNGC 4 cut(s) 85, 500, 750, 753
GsuI CTGGAG 4 cut(s) 312, 342, 402, 456
HaeIII GGCC 1 cut(s) 732
HapII CCGG 6 cut(s) 149, 179, 209, 389, 533, 854
HgaI GACGC 1 cut(s) 643
Hin1II CATG 2 cut(s) 84, 624
HincII GTYRAC 2 cut(s) 658, 706
HindII GTYRAC 2 cut(s) 658, 706
HinfI GANTC 1 cut(s) 5
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 6 cut(s) 149, 179, 209, 389, 533, 854
HphI GGTGA 3 cut(s) 163, 193, 223
Hpy166II GTNNAC 2 cut(s) 658, 706
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 1 cut(s) 788
Hpy8I GTNNAC 2 cut(s) 658, 706
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 4 cut(s) 97, 452, 556, 607
HpyCH4V TGCA 3 cut(s) 51, 93, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 499, 505
HpyF3I CTNAG 9 cut(s) 132, 162, 192, 222, 252, 282, 372, 402, 432
Hsp92II CATG 2 cut(s) 84, 624
KspAI GTTAAC 1 cut(s) 706
KspI CCGCGG 1 cut(s) 753
Kzo9I GATC 1 cut(s) 694
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 1 cut(s) 585
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 3 cut(s) 31, 518, 809
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 694
MluCI AATT 1 cut(s) 510
MseI TTAA 2 cut(s) 705, 726
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 6 cut(s) 149, 179, 209, 389, 533, 854
MspR9I CCNGG 4 cut(s) 389, 534, 582, 855
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 3 cut(s) 90, 499, 505
NciI CCSGG 3 cut(s) 389, 534, 855
NdeI CATATG 1 cut(s) 872
NdeII GATC 1 cut(s) 694
NlaIII CATG 2 cut(s) 84, 624
NlaIV GGNNCC 2 cut(s) 484, 696
NmuCI GTSAC 9 cut(s) 151, 181, 211, 241, 271, 301, 331, 361, 421
NspI RCATGY 2 cut(s) 84, 624
PaeI GCATGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 732
PciI ACATGT 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PkrI GCNGC 4 cut(s) 86, 501, 751, 754
PpuMI RGGWCCY 2 cut(s) 482, 518
PscI ACATGT 1 cut(s) 620
Psp5II RGGWCCY 2 cut(s) 482, 518
Psp6I CCWGG 1 cut(s) 580
PspEI GGTNACC 3 cut(s) 151, 181, 211
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 484, 696
PspPI GGNCC 2 cut(s) 482, 518
PspPPI RGGWCCY 2 cut(s) 482, 518
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 2 cut(s) 279, 399
RsaNI GTAC 2 cut(s) 278, 398
SacII CCGCGG 1 cut(s) 753
SalI GTCGAC 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 2 cut(s) 705, 726
SatI GCNGC 4 cut(s) 85, 500, 750, 753
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 2 cut(s) 482, 518
ScrFI CCNGG 4 cut(s) 389, 534, 582, 855
Sfr303I CCGCGG 1 cut(s) 753
SgrBI CCGCGG 1 cut(s) 753
SinI GGWCC 2 cut(s) 482, 518
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 84
Sse9I AATT 1 cut(s) 510
SseBI AGGCCT 1 cut(s) 732
SsiI CCGC 7 cut(s) 84, 108, 500, 578, 609, 750, 752
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 4 cut(s) 387, 532, 580, 853
TaqI TCGA 2 cut(s) 657, 744
TasI AATT 1 cut(s) 510
TauI GCSGC 4 cut(s) 87, 502, 752, 755
Tru1I TTAA 2 cut(s) 705, 726
Tru9I TTAA 2 cut(s) 705, 726
TscAI CASTG 5 cut(s) 276, 336, 366, 426, 480
TseFI GTSAC 9 cut(s) 151, 181, 211, 241, 271, 301, 331, 361, 421
Tsp45I GTSAC 9 cut(s) 151, 181, 211, 241, 271, 301, 331, 361, 421
TspGWI ACGGA 2 cut(s) 115, 708
TspRI CASTG 5 cut(s) 276, 336, 366, 426, 480
VpaK11BI GGWCC 2 cut(s) 482, 518
XceI RCATGY 2 cut(s) 84, 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.