MD15G1166100.v1.1

Hydrophobic seed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014898
Physical Location & Seq
Forward (+)
12485068 .. 12486646
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1166100.v1.1.491

Sequence Viewer

Length: 582 bp
ATGGCGGAATCCAGCAAGCTCCATGCTCTCTTCCTCATTTGCTTGCTCTTCATTTCCTCAGCCTCTCCAATCCTCGGTTGTGGCTATTGCGGCAAGCCAAAGCACAAGCCTATGAAACCTACCAAACCTCCCAAAGGCCCCATAGTCATTCCACCCATTCATGTCAAGCCACCTGGCGTCAAAGTCCCTCCAGTCACAGTCCCTCCCATTGTCAAACCACCAGTCACAATACCACCCATTGTCAAACCACCAGTTACAAATCCACCAAGTCCAGGGACACCATGCCCTCCACCTCCAGGGAAACCTAGTCCGGCTTCCAAGGACACATGCCCCATTGACACATTGAAACTGGGTGCTTGTGTGGATCTTCTAGGCGGGTTGGTCCACATTGGGCTGGGTGACCCGGCAGTGAACGAGTGCTGCCCGGTGCTGCAAGGGCTTGCTGAACTTGAAGCTGCAGTGTGCCTTTGCACAACTCTGAAAATCAAACTTCTTAACCTCAACATCTTTGTCCCACTGGCTCTTCAGCTCCTTGTCACTTGTGGCAAGAATCCTCCTCCTGGTTACACTTGCTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

194

Amino Acids

19.96

Weight (kDa)

9.03

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 103 - 191 2.1e-06 Probable lipid transfer
Hydrophob_seed PF14547 109 - 192 3e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 110 - 191 1.7e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10940 AT2G10940
fragaria_vesca FvH4_1g02570
malus_domestica MD02G1023200.v1.1 MD15G1166100.v1.1
prunus_persica Prupe.7G248900_v2.0.a1 Prupe.7G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0087601
rosa_laevigata RLG00000015883
rosa_multiflora Rmu_sc0002299.1_g000028
rosa_rugosa Rorug01G0476900
rosa_samantha Rh2AG030500 Rh2BG030300 Rh2CG030700 Rh2DG030500
rosa_wichuraiana Rw2G002420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 90, 375
AclWI GGATC 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 5 cut(s) 74, 134, 272, 296, 560
AgsI TTSAA 2 cut(s) 346, 452
AjnI CCWGG 4 cut(s) 172, 271, 295, 559
AluBI AGCT 3 cut(s) 19, 455, 529
AluI AGCT 3 cut(s) 19, 455, 529
AlwI GGATC 1 cut(s) 372
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 420, 430, 455
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspS9I GGNCC 2 cut(s) 137, 382
AsuC2I CCSGG 2 cut(s) 404, 425
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 407, 417, 442
BciT130I CCWGG 4 cut(s) 174, 273, 297, 561
BcnI CCSGG 2 cut(s) 404, 425
BfaI CTAG 3 cut(s) 306, 371, 580
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 4 cut(s) 91, 421, 431, 456
BlsI GCNGC 4 cut(s) 92, 422, 432, 457
Bme1390I CCNGG 6 cut(s) 174, 273, 297, 404, 425, 561
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 137, 382
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 6 cut(s) 174, 273, 297, 404, 425, 561
BmrI ACTGGG 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 359
BpmI CTGGAG 2 cut(s) 174, 279
Bpu10I CCTNAGC 1 cut(s) 58
BpuMI CCSGG 2 cut(s) 404, 425
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 73, 272, 296, 318
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 187, 217
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 134, 272, 296, 560
Bse1I ACTGG 5 cut(s) 191, 221, 251, 354, 522
BseBI CCWGG 4 cut(s) 174, 273, 297, 561
BseDI CCNNGG 4 cut(s) 73, 272, 296, 318
BseLI CCNNNNNNNGG 5 cut(s) 74, 134, 272, 296, 560
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 5 cut(s) 191, 221, 251, 354, 522
BseRI GAGGAG 1 cut(s) 546
BseXI GCAGC 3 cut(s) 407, 417, 442
BseYI CCCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 311, 404, 425
BslFI GGGAC 4 cut(s) 170, 185, 289, 497
BslI CCNNNNNNNGG 5 cut(s) 74, 134, 272, 296, 560
BsmFI GGGAC 4 cut(s) 170, 185, 289, 497
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 3 cut(s) 5, 90, 375
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 2 cut(s) 53, 528
BsrI ACTGG 5 cut(s) 191, 221, 251, 354, 522
BssECI CCNNGG 4 cut(s) 73, 272, 296, 318
BssMI GATC 1 cut(s) 364
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 4 cut(s) 174, 273, 297, 561
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 3 cut(s) 35, 53, 528
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 4 cut(s) 17, 44, 95, 441
BstDEI CTNAG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 398
BstENI CCTNNNNNAGG 1 cut(s) 132
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 90, 436
BstNI CCWGG 4 cut(s) 174, 273, 297, 561
BstNSI RCATGY 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 6 cut(s) 172, 271, 295, 402, 423, 559
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 407, 417, 442
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 414, 465
BtsIMutI CAGTG 3 cut(s) 414, 465, 515
Cac8I GCNNGC 4 cut(s) 17, 44, 95, 441
Cfr13I GGNCC 2 cut(s) 137, 382
CseI GACGC 1 cut(s) 166
CviAII CATG 4 cut(s) 23, 161, 282, 327
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eam1104I CTCTTC 3 cut(s) 35, 53, 528
EarI CTCTTC 3 cut(s) 35, 53, 528
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 509
Eco91I GGTNACC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 4 cut(s) 172, 271, 295, 559
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 26, 164, 285, 330
FaiI YATR 6 cut(s) 24, 113, 143, 162, 283, 328
FaqI GGGAC 4 cut(s) 170, 185, 289, 497
FatI CATG 4 cut(s) 22, 160, 281, 326
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 91, 421, 431, 456
Fsp4HI GCNGC 4 cut(s) 91, 421, 431, 456
FspBI CTAG 3 cut(s) 306, 371, 580
GluI GCNGC 4 cut(s) 91, 421, 431, 456
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 2 cut(s) 174, 279
HaeIII GGCC 1 cut(s) 138
HapII CCGG 3 cut(s) 311, 404, 425
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 26, 164, 285, 330
HinfI GANTC 2 cut(s) 8, 550
HpaII CCGG 3 cut(s) 311, 404, 425
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 385, 412
Hpy188I TCNGA 1 cut(s) 480
Hpy8I GTNNAC 2 cut(s) 385, 412
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 433, 458, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 436
HpyF3I CTNAG 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 26, 164, 285, 330
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 2 cut(s) 53, 528
LmnI GCTCC 2 cut(s) 24, 534
Lsp1109I GCAGC 3 cut(s) 407, 417, 442
MaeI CTAG 3 cut(s) 306, 371, 580
MaeIII GTNAC 6 cut(s) 193, 223, 253, 398, 535, 563
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 4 cut(s) 22, 40, 359, 515
MflI RGATCY 1 cut(s) 364
MseI TTAA 1 cut(s) 495
MspI CCGG 3 cut(s) 311, 404, 425
MspR9I CCNGG 6 cut(s) 174, 273, 297, 404, 425, 561
MvaI CCWGG 4 cut(s) 174, 273, 297, 561
MwoI GCNNNNNNNGC 2 cut(s) 90, 436
NciI CCSGG 2 cut(s) 404, 425
NdeII GATC 1 cut(s) 364
NlaIII CATG 4 cut(s) 26, 164, 285, 330
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 4 cut(s) 193, 223, 398, 535
NspI RCATGY 1 cut(s) 330
PciSI GCTCTTC 2 cut(s) 53, 528
PfeI GAWTC 2 cut(s) 8, 550
PkrI GCNGC 4 cut(s) 92, 422, 432, 457
Psp6I CCWGG 4 cut(s) 172, 271, 295, 559
PspEI GGTNACC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 4 cut(s) 172, 271, 295, 559
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 137, 382
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 364
SapI GCTCTTC 2 cut(s) 53, 528
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 4 cut(s) 91, 421, 431, 456
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 137, 382
ScrFI CCNGG 6 cut(s) 174, 273, 297, 404, 425, 561
SetI ASST 9 cut(s) 21, 121, 130, 175, 295, 307, 457, 501, 531
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 382
SsiI CCGC 3 cut(s) 5, 90, 375
SspMI CTAG 3 cut(s) 306, 371, 580
StyD4I CCNGG 6 cut(s) 172, 271, 295, 402, 423, 559
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 199
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 8, 550
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 3 cut(s) 414, 465, 522
TseFI GTSAC 4 cut(s) 193, 223, 398, 535
TseI GCWGC 3 cut(s) 420, 430, 455
Tsp45I GTSAC 4 cut(s) 193, 223, 398, 535
TspDTI ATGAA 3 cut(s) 40, 128, 149
TspRI CASTG 3 cut(s) 414, 465, 522
VpaK11BI GGWCC 1 cut(s) 382
XagI CCTNNNNNAGG 1 cut(s) 132
XceI RCATGY 1 cut(s) 330
XspI CTAG 3 cut(s) 306, 371, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.