Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014898

Physical Location & Seq

Genomic Coordinates Forward (+)

1622540 .. 1624717

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTGCTTCCTAGGGTTTTTTGTTTTGTTCCACTCATCACTATTCCTATATAACACCCTCGTTTCACTACAAACCCTTACAACAGCAGCACTCTGCCACTCTCTCTCTCTCTCTTTCTCTCTCCAAAGACAGACAGACATGGCGGAGTCCAGCAAGCTCCATGCTCTCTTCCTCATTTGCTTGCTCTTCATTTCCTCAGCCTCTCCAATCCTCGGCTGTGGCACTTGCGGCAAGCCAAAGCACAAGCCTGTTAAACCTAAACCAAAGACTCCCAAAGGACCCATAGTGGTTCCACCCATTCATGTCAAGCCACCTGGCGTCAAAATACCTCCAGTCACAGTCCCTCCCATCGTAAAACCACCAGTGACAATACCACCCATTGTCAAACCACCAGTGACAATCCCACCCATCAAACCACCAGTGACAATCCCACCCATCAAACCACCAGTCACAATCCCACCCATTATCCCACCCATTGTAAAACCACCAGTCACAATCCCACCCATCGTAAAACCACCCGTTACAATCCCACCCGTCACAATCCCACCCATTAAGCCACCAGTGACCCTTCCTCCAGTAATCCCACCCATCGTAAAACCACCAGTCACAATCCCACCCGTTACAATCCCACCCATTAAGCCACCAGTGACCCTTCCTCCAATAATCCCACCTGGGATAATCCCACCAGTCATAGGGGGGCCCCCAGCTACGAAGCCACCAAGTCCAGGGACACCATGCCCTCCACCGCCAGGGAACACGTGCCCCATTGACACATTGAAACTGGGTGCTTGTGTGGATCTTCTAGGCGGGTTGGTCCACGTTGGGCAGGGTGACCCGGTGGTGAACGAGTGCTGCCCGGTGCTGCAAGGGCTTGTTGAACTTGAAGCTGCAGTGTGCCTCTGCACTACTCTCAAAATCAAGCTTCTTAACCTCAACATCTTTGTCCCACTGGCTCTTCAGCTCCTTGTCACTTGTGGCAAGAGTCCTCCTCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

333

Amino Acids

34.65

Weight (kDa)

9.44

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Extensin_1	PF02095	119 - 256	6.8e-06	Extensin-like protein
Hydrophob_seed	PF14547	253 - 331	7.5e-23	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	254 - 331	6.7e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10940 AT2G10940
fragaria_vesca	FvH4_1g02570
malus_domestica	MD02G1023200.v1.1 MD15G1166100.v1.1
prunus_persica	Prupe.7G248900_v2.0.a1 Prupe.7G248900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0087601
rosa_laevigata	RLG00000015883
rosa_multiflora	Rmu_sc0002299.1_g000028
rosa_rugosa	Rorug01G0476900
rosa_samantha	Rh2AG030500 Rh2BG030300 Rh2CG030700 Rh2DG030500
rosa_wichuraiana	Rw2G002420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	143, 228, 746, 807
AclWI	GGATC	1 cut(s)	804
AcuI	CTGAAG	1 cut(s)	941
AcvI	CACGTG	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	212, 692, 725, 749
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	778, 878, 884
AjnI	CCWGG	4 cut(s)	313, 670, 724, 748
AluBI	AGCT	5 cut(s)	157, 707, 887, 922, 961
AluI	AGCT	5 cut(s)	157, 707, 887, 922, 961
AlwI	GGATC	1 cut(s)	804
AoxI	GGCC	1 cut(s)	698
ApaI	GGGCCC	1 cut(s)	702
ApeKI	GCWGC	4 cut(s)	86, 852, 862, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspA2I	CCTAGG	1 cut(s)	10
AspS9I	GGNCC	4 cut(s)	278, 698, 699, 814
AsuC2I	CCSGG	2 cut(s)	836, 857
AsuHPI	GGTGA	2 cut(s)	842, 853
AvaII	GGWCC	2 cut(s)	278, 814
AvrII	CCTAGG	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	702, 764
BanII	GRGCYC	1 cut(s)	702
BbrPI	CACGTG	1 cut(s)	759
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	98, 839, 849, 874
BccI	CCATC	5 cut(s)	356, 416, 443, 512, 596
BciT130I	CCWGG	4 cut(s)	315, 672, 726, 750
BcnI	CCSGG	2 cut(s)	836, 857
BfaI	CTAG	2 cut(s)	11, 803
BfmI	CTRYAG	1 cut(s)	888
BisI	GCNGC	5 cut(s)	87, 229, 853, 863, 888
BlnI	CCTAGG	1 cut(s)	10
BlsI	GCNGC	5 cut(s)	88, 230, 854, 864, 889
Bme1390I	CCNGG	6 cut(s)	315, 672, 726, 750, 836, 857
Bme18I	GGWCC	2 cut(s)	278, 814
BmgT120I	GGNCC	4 cut(s)	278, 698, 699, 814
BmiI	GGNNCC	5 cut(s)	280, 291, 699, 700, 701
BmrFI	CCNGG	6 cut(s)	315, 672, 726, 750, 836, 857
BmrI	ACTGGG	1 cut(s)	791
BmuI	ACTGGG	1 cut(s)	791
BplI	GAGNNNNNCTC	1 cut(s)	973
BpmI	CTGGAG	2 cut(s)	315, 558
Bpu10I	CCTNAGC	1 cut(s)	196
BpuMI	CCSGG	2 cut(s)	836, 857
BsaAI	YACGTR	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	10, 211, 671, 725, 749
BsaXI	ACNNNNNCTCC	6 cut(s)	328, 358, 556, 586, 640, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 692, 725, 749
BseBI	CCWGG	4 cut(s)	315, 672, 726, 750
BseDI	CCNNGG	5 cut(s)	10, 211, 671, 725, 749
BseLI	CCNNNNNNNGG	4 cut(s)	212, 692, 725, 749
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	2 cut(s)	702, 764
BseXI	GCAGC	4 cut(s)	98, 839, 849, 874
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	886
BshFI	GGCC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	836, 857
BslFI	GGGAC	3 cut(s)	326, 742, 929
BslI	CCNNNNNNNGG	4 cut(s)	212, 692, 725, 749
BsmFI	GGGAC	3 cut(s)	326, 742, 929
BsnI	GGCC	1 cut(s)	700
Bsp120I	GGGCCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	702, 764
Bsp143I	GATC	1 cut(s)	796
BspACI	CCGC	4 cut(s)	143, 228, 746, 807
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	5 cut(s)	280, 291, 699, 700, 701
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	1 cut(s)	804
BspQI	GCTCTTC	2 cut(s)	191, 960
BssECI	CCNNGG	5 cut(s)	10, 211, 671, 725, 749
BssMI	GATC	1 cut(s)	796
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	4 cut(s)	315, 672, 726, 750
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	3 cut(s)	173, 191, 960
BstACI	GRCGYC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	759
BstC8I	GCNNGC	3 cut(s)	155, 182, 233
BstDEI	CTNAG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	830
BstKTI	GATC	1 cut(s)	799
BstMBI	GATC	1 cut(s)	796
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 868
BstNI	CCWGG	4 cut(s)	315, 672, 726, 750
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	6 cut(s)	313, 670, 724, 748, 834, 855
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	2 cut(s)	702, 764
BstV1I	GCAGC	4 cut(s)	98, 839, 849, 874
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	7 cut(s)	369, 399, 426, 567, 651, 897, 947
Cac8I	GCNNGC	3 cut(s)	155, 182, 233
Cfr13I	GGNCC	4 cut(s)	278, 698, 699, 814
CseI	GACGC	1 cut(s)	307
CviAII	CATG	4 cut(s)	139, 161, 302, 735
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	173, 191, 960
EarI	CTCTTC	3 cut(s)	173, 191, 960
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	278, 814
Eco57I	CTGAAG	1 cut(s)	941
Eco72I	CACGTG	1 cut(s)	759
Eco91I	GGTNACC	1 cut(s)	830
EcoO109I	RGGNCCY	3 cut(s)	278, 698, 699
EcoO65I	GGTNACC	1 cut(s)	830
EcoRII	CCWGG	4 cut(s)	313, 670, 724, 748
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	142, 164, 305, 738
FaiI	YATR	8 cut(s)	49, 51, 140, 162, 284, 303, 692, 736
FaqI	GGGAC	3 cut(s)	326, 742, 929
FatI	CATG	4 cut(s)	138, 160, 301, 734
FauI	CCCGC	1 cut(s)	800
Fnu4HI	GCNGC	5 cut(s)	87, 229, 853, 863, 888
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	5 cut(s)	87, 229, 853, 863, 888
FspBI	CTAG	2 cut(s)	11, 803
GluI	GCNGC	5 cut(s)	87, 229, 853, 863, 888
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	2 cut(s)	315, 558
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	2 cut(s)	836, 857
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	142, 164, 305, 738
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	3 cut(s)	146, 268, 982
HpaII	CCGG	2 cut(s)	836, 857
HphI	GGTGA	2 cut(s)	842, 853
Hpy166II	GTNNAC	2 cut(s)	817, 844
Hpy188III	TCNNGA	1 cut(s)	992
Hpy8I	GTNNAC	2 cut(s)	817, 844
HpyAV	CCTTC	2 cut(s)	578, 662
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	758, 819
HpyCH4V	TGCA	3 cut(s)	865, 890, 903
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 868
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	758, 819
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	142, 164, 305, 738
Kzo9I	GATC	1 cut(s)	796
LguI	GCTCTTC	2 cut(s)	191, 960
LmnI	GCTCC	2 cut(s)	162, 966
Lsp1109I	GCAGC	4 cut(s)	98, 839, 849, 874
MaeI	CTAG	2 cut(s)	11, 803
MaeII	ACGT	2 cut(s)	758, 819
MalI	GATC	1 cut(s)	798
MboI	GATC	1 cut(s)	796
MboII	GAAGA	4 cut(s)	160, 178, 791, 947
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	2 cut(s)	702, 764
MlyI	GAGTC	3 cut(s)	155, 262, 991
MseI	TTAA	4 cut(s)	252, 552, 636, 927
MspI	CCGG	2 cut(s)	836, 857
MspR9I	CCNGG	6 cut(s)	315, 672, 726, 750, 836, 857
MvaI	CCWGG	4 cut(s)	315, 672, 726, 750
MwoI	GCNNNNNNNGC	2 cut(s)	228, 868
NciI	CCSGG	2 cut(s)	836, 857
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	4 cut(s)	142, 164, 305, 738
NlaIV	GGNNCC	5 cut(s)	280, 291, 699, 700, 701
NmeAIII	GCCGAG	1 cut(s)	192
PciSI	GCTCTTC	2 cut(s)	191, 960
PkrI	GCNGC	5 cut(s)	88, 230, 854, 864, 889
PleI	GAGTC	3 cut(s)	154, 262, 990
PmaCI	CACGTG	1 cut(s)	759
PmlI	CACGTG	1 cut(s)	759
PpsI	GAGTC	3 cut(s)	154, 262, 990
Ppu21I	YACGTR	1 cut(s)	759
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	4 cut(s)	313, 670, 724, 748
PspCI	CACGTG	1 cut(s)	759
PspEI	GGTNACC	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	4 cut(s)	313, 670, 724, 748
PspN4I	GGNNCC	5 cut(s)	280, 291, 699, 700, 701
PspOMI	GGGCCC	1 cut(s)	698
PspPI	GGNCC	4 cut(s)	278, 698, 699, 814
PspPPI	RGGWCCY	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	796
SapI	GCTCTTC	2 cut(s)	191, 960
SaqAI	TTAA	4 cut(s)	252, 552, 636, 927
SatI	GCNGC	5 cut(s)	87, 229, 853, 863, 888
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	4 cut(s)	278, 698, 699, 814
SchI	GAGTC	3 cut(s)	155, 262, 991
ScrFI	CCNGG	6 cut(s)	315, 672, 726, 750, 836, 857
SduI	GDGCHC	2 cut(s)	702, 764
SfcI	CTRYAG	1 cut(s)	888
SinI	GGWCC	2 cut(s)	278, 814
SsiI	CCGC	4 cut(s)	143, 228, 746, 807
SspMI	CTAG	2 cut(s)	11, 803
StyD4I	CCNGG	6 cut(s)	313, 670, 724, 748, 834, 855
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	761, 822
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	252, 552, 636, 927
Tru9I	TTAA	4 cut(s)	252, 552, 636, 927
TscAI	CASTG	7 cut(s)	369, 399, 426, 567, 651, 897, 954
TseI	GCWGC	4 cut(s)	86, 852, 862, 887
TspDTI	ATGAA	2 cut(s)	178, 290
TspRI	CASTG	7 cut(s)	369, 399, 426, 567, 651, 897, 954
VpaK11BI	GGWCC	2 cut(s)	278, 814
XmaJI	CCTAGG	1 cut(s)	10
XspI	CTAG	2 cut(s)	11, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.