RchiOBHm_Chr2g0087601

Hydrophobic seed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014898
Physical Location & Seq
Forward (+)
2288795 .. 2290566
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46304

Sequence Viewer

Length: 318 bp
ATGGAGTCCAGTAAACTCAATGCTCTCTTCTTCATCTTCATGCTCGTCATTTCCTCGGCCGCTCCGATTCTCGGGTGCCCTACTTGCGGCAAAAAGCCTCCTCCCAAGCACACTAAGCCTAAGACCCCCAAGGGCCCTATTACAGTCCCTCCCATTGTGAAACCCCCAGTCATCAAAGTCCCCCCAGTCACAGTCCCACCTATCAAACCACCAGTGACAATACCACCCATCGTCAAACCACCAATCACCATCCCCCCCGTCATCCCTCCCATTGTCAAACCACCAATCACAATCCCACCATCATCCCTCCCGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

105

Amino Acids

11.01

Weight (kDa)

10.32

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10940 AT2G10940
fragaria_vesca FvH4_1g02570
malus_domestica MD02G1023200.v1.1 MD15G1166100.v1.1
prunus_persica Prupe.7G248900_v2.0.a1 Prupe.7G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0087601
rosa_laevigata RLG00000015883
rosa_multiflora Rmu_sc0002299.1_g000028
rosa_rugosa Rorug01G0476900
rosa_samantha Rh2AG030500 Rh2BG030300 Rh2CG030700 Rh2DG030500
rosa_wichuraiana Rw2G002420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 2 cut(s) 60, 87
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 71, 86
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 57, 133
ApaI GGGCCC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 133, 134
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 80, 137
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 137
BccI CCATC 3 cut(s) 236, 257, 307
BisI GCNGC 2 cut(s) 60, 88
BlsI GCNGC 2 cut(s) 61, 89
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 133, 134
BmiI GGNNCC 2 cut(s) 77, 135
BmrI ACTGGG 2 cut(s) 161, 179
BmuI ACTGGG 2 cut(s) 161, 179
BsaJI CCNNGG 2 cut(s) 54, 129
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 86
Bse1I ACTGG 4 cut(s) 9, 167, 185, 212
BseDI CCNNGG 2 cut(s) 54, 129
BseGI GGATG 3 cut(s) 249, 261, 302
BseLI CCNNNNNNNGG 2 cut(s) 71, 86
BseNI ACTGG 4 cut(s) 9, 167, 185, 212
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 2 cut(s) 80, 137
BseX3I CGGCCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 59, 135
BshNI GGYRCC 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 3 cut(s) 131, 164, 179
BslI CCNNNNNNNGG 2 cut(s) 71, 86
BsmFI GGGAC 3 cut(s) 131, 164, 179
BsnI GGCC 2 cut(s) 59, 135
BsoBI CYCGRG 1 cut(s) 71
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 80, 137
BspACI CCGC 2 cut(s) 60, 87
BspANI GGCC 2 cut(s) 59, 135
BspLI GGNNCC 2 cut(s) 77, 135
BspT107I GGYRCC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 4 cut(s) 9, 167, 185, 212
BssECI CCNNGG 2 cut(s) 54, 129
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 145, 193
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 114, 120
BstF5I GGATG 3 cut(s) 249, 261, 302
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 84, 115
BstSLI GKGCMC 2 cut(s) 80, 137
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 59, 135
BtsCI GGATG 3 cut(s) 249, 261, 302
BtsIMutI CAGTG 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 133, 134
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 59, 97, 118, 135
CviKI_1 RGCY 4 cut(s) 59, 97, 118, 135
DdeI CTNAG 2 cut(s) 114, 120
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 137
Eco52I CGGCCG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 133, 134
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 43
FaiI YATR 2 cut(s) 41, 316
FaqI GGGAC 3 cut(s) 131, 164, 179
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 60, 88
FokI GGATG 3 cut(s) 236, 248, 289
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 60, 88
GluI GCNGC 2 cut(s) 60, 88
HaeIII GGCC 2 cut(s) 59, 135
Hin1II CATG 1 cut(s) 43
HinfI GANTC 2 cut(s) 5, 67
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4III ACNGT 2 cut(s) 145, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 115
HpyF3I CTNAG 2 cut(s) 114, 120
Hsp92II CATG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 22, 180, 198, 225
MaeIII GTNAC 2 cut(s) 187, 214
MbiI CCGCTC 1 cut(s) 62
MboII GAAGA 3 cut(s) 19, 22, 28
MhlI GDGCHC 2 cut(s) 80, 137
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 64, 108, 111, 159, 276, 317
MslI CAYNNNNRTG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 84, 115
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 77, 135
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 2 cut(s) 187, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 61, 89
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 77, 135
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 133, 134
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 2 cut(s) 60, 88
Sau96I GGNCC 2 cut(s) 133, 134
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 80, 137
SetI ASST 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 2 cut(s) 60, 87
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 145, 193
TauI GCSGC 2 cut(s) 62, 90
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 187, 214
Tsp45I GTSAC 2 cut(s) 187, 214
TspDTI ATGAA 2 cut(s) 22, 28
TspRI CASTG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.