Prupe.7G248900_v2.0.a1

Hydrophobic seed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014898
Physical Location & Seq
Reverse (-)
21106835 .. 21108818
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G248900.1

Sequence Viewer

Length: 1047 bp
ATGGCCGAGTCCAGTAAGCTCCATGCTCTCTTCTTCATTTGCTTGCTCTTCATCTCCTCAGCCACTCCCATTCTTGGCTGCGGTACTTGTGGCAAGCCTCCCCCAAAGCACAAACCTAAGCCTAAGACCCCCAAAGGCCCCATCCCTCCCATTCATGTCAAGCCCCCAGTCGTTAAACCACCAGTCACAATCCCACCCATCGTCAAACCACCAGTTACAATCCCTCCCATCGTTAAACCACCAGTCACAATTCCACCCATAGTCAAACCACCAGTCACAATCCCTCCCATCGTCAAACCACCAGTTACAATCCCTCCCATCGTCAAACCACCAGTTACAATCCCTCCCATTATCCCACCCGTTGTTAAGCCACCGGTTACAATCCCACCCATTGTTAAGCCACCAGTTACAATCCCACCCATCGTCAAACCACCAGTTACAATCCCTCCCATTATCCCACCCGTCGTCAAACCACCAGTTACAATCCCTCCCATTATCCCACCCGTCGTCAAACCACCAGTTACAATCCCTCCCATTATCCCACCAGTTACAATCCCTCCCATTATCCCACCAGTTACAATCCCTCCCATTATCCCACCCGTCGTTAAACCACCGGTTACAATCCCACCCATCACTGTCCCACCCATTTTGAAACCGCCAGTGACCCTGCCTCCAATAGTGCCACCTGGCATAATCCCTCCAGTCATAGGAGGAGGGCCACCGGGTAAAAAGCCTCCGAGTCCCGGGACGCCATGCCCTCCTCCTGCCGAGAGTCCGGGGGCCAAGGATACTTGTCCCATCGACACGATGAAACTGGGTGCTTGTGTGGATCTTCTTGGTGGGTTGGTGCACATTGGGCAAGGTGACCCAGTGGTAAATGAATGCTGTCCAGTGCTGCAAGGGCTTGTTGAACTTGAGGCTGCCATGTGTCTCTGCACAACTCTCAAAATGAAGCTTCTTAACCTCAACATCTTTGTCCCGATTGCTCTTCAGCTCCTTGTCACCTGTGGCAAGTCACCTCCTCCTGGTTACACCTGCTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

349

Amino Acids

35.95

Weight (kDa)

9.61

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G10940 AT2G10940
fragaria_vesca FvH4_1g02570
malus_domestica MD02G1023200.v1.1 MD15G1166100.v1.1
prunus_persica Prupe.7G248900_v2.0.a1 Prupe.7G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0087601
rosa_laevigata RLG00000015883
rosa_multiflora Rmu_sc0002299.1_g000028
rosa_rugosa Rorug01G0476900
rosa_samantha Rh2AG030500 Rh2BG030300 Rh2CG030700 Rh2DG030500
rosa_wichuraiana Rw2G002420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1043
Acc36I ACCTGC 1 cut(s) 1043
AciI CCGC 2 cut(s) 81, 656
AclWI GGATC 1 cut(s) 837
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 974
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 4 cut(s) 74, 707, 743, 1025
AgeI ACCGGT 2 cut(s) 373, 613
AgsI TTSAA 2 cut(s) 652, 911
AjnI CCWGG 2 cut(s) 685, 1024
AluBI AGCT 3 cut(s) 19, 955, 994
AluI AGCT 3 cut(s) 19, 955, 994
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 1 cut(s) 935
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 1 cut(s) 837
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 4 cut(s) 3, 136, 716, 780
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 3 cut(s) 78, 895, 920
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AsiGI ACCGGT 2 cut(s) 373, 613
AspS9I GGNCC 3 cut(s) 137, 716, 780
AsuC2I CCSGG 4 cut(s) 723, 744, 745, 777
AsuHPI GGTGA 3 cut(s) 875, 994, 1008
AvaI CYCGRG 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 852
Bbv12I GWGCWC 1 cut(s) 852
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 65, 882, 907
BccI CCATC 8 cut(s) 149, 206, 236, 296, 326, 428, 638, 806
BciT130I CCWGG 2 cut(s) 687, 1026
BciVI GTATCC 1 cut(s) 781
BcnI CCSGG 4 cut(s) 723, 744, 745, 777
BcoDI GTCTC 1 cut(s) 935
BfaI CTAG 1 cut(s) 1045
BfuAI ACCTGC 1 cut(s) 1043
BfuI GTATCC 1 cut(s) 781
BisI GCNGC 3 cut(s) 79, 896, 921
BlsI GCNGC 3 cut(s) 80, 897, 922
Bme1390I CCNGG 6 cut(s) 687, 723, 744, 745, 777, 1026
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 3 cut(s) 137, 716, 780
BmiI GGNNCC 2 cut(s) 139, 781
BmrFI CCNGG 6 cut(s) 687, 723, 744, 745, 777, 1026
BmrI ACTGGG 3 cut(s) 161, 824, 863
BmuI ACTGGG 3 cut(s) 161, 824, 863
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 2 cut(s) 58, 117
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 4 cut(s) 723, 744, 745, 777
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 743, 776, 783
BsaWI WCCGGW 2 cut(s) 373, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 707, 743, 1025
Bse118I RCCGGY 2 cut(s) 373, 613
BseBI CCWGG 2 cut(s) 687, 1026
BseDI CCNNGG 3 cut(s) 743, 776, 783
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 4 cut(s) 74, 707, 743, 1025
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 4 cut(s) 46, 726, 750, 1011
BseSI GKGCMC 1 cut(s) 852
BseXI GCAGC 3 cut(s) 65, 882, 907
BsgI GTGCAG 1 cut(s) 919
BshFI GGCC 4 cut(s) 5, 138, 718, 782
BshTI ACCGGT 2 cut(s) 373, 613
BsiHKAI GWGCWC 1 cut(s) 852
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 5 cut(s) 374, 614, 722, 744, 776
BslFI GGGAC 5 cut(s) 623, 726, 760, 780, 962
BslI CCNNNNNNNGG 4 cut(s) 74, 707, 743, 1025
BsmAI GTCTC 1 cut(s) 935
BsmFI GGGAC 5 cut(s) 623, 726, 760, 780, 962
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 4 cut(s) 5, 138, 718, 782
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 852
Bsp143I GATC 1 cut(s) 829
BspACI CCGC 2 cut(s) 81, 656
BspANI GGCC 4 cut(s) 5, 138, 718, 782
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 139, 781
BspMI ACCTGC 1 cut(s) 1043
BspPI GGATC 1 cut(s) 837
BspQI GCTCTTC 2 cut(s) 53, 993
BsrFI RCCGGY 2 cut(s) 373, 613
BssAI RCCGGY 2 cut(s) 373, 613
BssECI CCNNGG 3 cut(s) 743, 776, 783
BssMI GATC 1 cut(s) 829
BssNI GRCGYC 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 687, 1026
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 35, 53, 993
BstACI GRCGYC 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 44, 95
BstDEI CTNAG 3 cut(s) 58, 117, 123
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 832
BstMAI GTCTC 1 cut(s) 935
BstMBI GATC 1 cut(s) 829
BstMWI GCNNNNNNNGC 2 cut(s) 856, 901
BstNI CCWGG 2 cut(s) 687, 1026
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 6 cut(s) 685, 721, 742, 743, 775, 1024
BstSLI GKGCMC 1 cut(s) 852
BstV1I GCAGC 3 cut(s) 65, 882, 907
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 4 cut(s) 5, 138, 718, 782
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 633, 666, 876, 897
BveI ACCTGC 1 cut(s) 1043
Cac8I GCNNGC 2 cut(s) 44, 95
Cfr10I RCCGGY 2 cut(s) 373, 613
Cfr13I GGNCC 3 cut(s) 137, 716, 780
Cfr9I CCCGGG 1 cut(s) 743
CseI GACGC 1 cut(s) 757
Csp6I GTAC 1 cut(s) 84
CspAI ACCGGT 2 cut(s) 373, 613
CspCI CAANNNNNGTGG 2 cut(s) 630, 665
CviAII CATG 4 cut(s) 23, 155, 753, 925
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 3 cut(s) 58, 117, 123
DpnI GATC 1 cut(s) 831
DpnII GATC 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 35, 53, 993
EarI CTCTTC 3 cut(s) 35, 53, 993
Eco130I CCWWGG 1 cut(s) 783
Eco57I CTGAAG 1 cut(s) 974
Eco88I CYCGRG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 863
EcoO109I RGGNCCY 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 685, 1024
EcoT14I CCWWGG 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 4 cut(s) 26, 158, 756, 928
FaiI YATR 7 cut(s) 24, 156, 260, 692, 707, 754, 926
FaqI GGGAC 5 cut(s) 623, 726, 760, 780, 962
FatI CATG 4 cut(s) 22, 154, 752, 924
Fnu4HI GCNGC 3 cut(s) 79, 896, 921
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 79, 896, 921
FspBI CTAG 1 cut(s) 1045
GluI GCNGC 3 cut(s) 79, 896, 921
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 4 cut(s) 5, 138, 718, 782
HapII CCGG 5 cut(s) 374, 614, 722, 744, 776
HgaI GACGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 4 cut(s) 26, 158, 756, 928
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 3 cut(s) 8, 739, 772
HpaII CCGG 5 cut(s) 374, 614, 722, 744, 776
HphI GGTGA 3 cut(s) 875, 994, 1008
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 1 cut(s) 738
Hpy188III TCNNGA 1 cut(s) 979
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 3 cut(s) 467, 509, 605
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4V TGCA 3 cut(s) 850, 898, 936
HpyF10VI GCNNNNNNNGC 2 cut(s) 856, 901
HpyF3I CTNAG 3 cut(s) 58, 117, 123
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 4 cut(s) 26, 158, 756, 928
Kzo9I GATC 1 cut(s) 829
LguI GCTCTTC 2 cut(s) 53, 993
LmnI GCTCC 2 cut(s) 24, 999
Lsp1109I GCAGC 3 cut(s) 65, 882, 907
MaeI CTAG 1 cut(s) 1045
MalI GATC 1 cut(s) 831
MboI GATC 1 cut(s) 829
MboII GAAGA 5 cut(s) 22, 25, 40, 824, 980
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 1 cut(s) 852
MluCI AATT 1 cut(s) 249
MlyI GAGTC 3 cut(s) 17, 748, 781
MseI TTAA 6 cut(s) 174, 234, 366, 396, 606, 960
MspI CCGG 5 cut(s) 374, 614, 722, 744, 776
MspR9I CCNGG 6 cut(s) 687, 723, 744, 745, 777, 1026
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 2 cut(s) 687, 1026
MwoI GCNNNNNNNGC 2 cut(s) 856, 901
NciI CCSGG 4 cut(s) 723, 744, 745, 777
NdeII GATC 1 cut(s) 829
NlaIII CATG 4 cut(s) 26, 158, 756, 928
NlaIV GGNNCC 2 cut(s) 139, 781
NmeAIII GCCGAG 2 cut(s) 31, 793
NmuCI GTSAC 7 cut(s) 184, 244, 274, 661, 863, 1000, 1014
PaqCI CACCTGC 1 cut(s) 1043
PciSI GCTCTTC 2 cut(s) 53, 993
PctI GAATGC 1 cut(s) 887
PinAI ACCGGT 2 cut(s) 373, 613
PkrI GCNGC 3 cut(s) 80, 897, 922
PleI GAGTC 3 cut(s) 16, 747, 780
PpsI GAGTC 3 cut(s) 16, 747, 780
Psp6I CCWGG 2 cut(s) 685, 1024
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 685, 1024
PspN4I GGNNCC 2 cut(s) 139, 781
PspPI GGNCC 3 cut(s) 137, 716, 780
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SapI GCTCTTC 2 cut(s) 53, 993
SaqAI TTAA 6 cut(s) 174, 234, 366, 396, 606, 960
SatI GCNGC 3 cut(s) 79, 896, 921
Sau3AI GATC 1 cut(s) 829
Sau96I GGNCC 3 cut(s) 137, 716, 780
SchI GAGTC 3 cut(s) 17, 748, 781
ScrFI CCNGG 6 cut(s) 687, 723, 744, 745, 777, 1026
SduI GDGCHC 1 cut(s) 852
SmaI CCCGGG 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 81, 656
SspMI CTAG 1 cut(s) 1045
StyD4I CCNGG 6 cut(s) 685, 721, 742, 743, 775, 1024
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 1 cut(s) 637
TaqI TCGA 1 cut(s) 801
TasI AATT 1 cut(s) 249
Tru1I TTAA 6 cut(s) 174, 234, 366, 396, 606, 960
Tru9I TTAA 6 cut(s) 174, 234, 366, 396, 606, 960
TscAI CASTG 4 cut(s) 640, 666, 876, 897
TseFI GTSAC 7 cut(s) 184, 244, 274, 661, 863, 1000, 1014
TseI GCWGC 3 cut(s) 78, 895, 920
Tsp45I GTSAC 7 cut(s) 184, 244, 274, 661, 863, 1000, 1014
TspDTI ATGAA 6 cut(s) 25, 40, 143, 824, 894, 965
TspMI CCCGGG 1 cut(s) 743
TspRI CASTG 4 cut(s) 640, 666, 876, 897
VneI GTGCAC 1 cut(s) 848
XmaI CCCGGG 1 cut(s) 743
XspI CTAG 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.