AT2G12550

Ubiquitin associated domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
5114804 .. 5118753
3950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12550.1

Sequence Viewer

Length: 1689 bp
ATGGCGAAACTAAAGGTTGCTGGTACATGGGGAGGCATACTTGAGGTAGAACTCGAGAATTGGACTCTAAACATGTTGAGAGACGAAGTAGCTAAGCGATCAGGACTTGATCCTGAATCAATCAAACTAATTTTCGCCGGAAAAATCCTGAAAGACGACGGCGATGCTACTCTAACGCTTTCGCAATTGGGTATTAAAGAAAACTCTAAGATCCTCTCTTGTCGTCAAGCTGCTCCTGAAGAAGGTAAGTCTATCATGGCTGAAGAAGAAAGGGCTCGTCGTCTCTCTCGTGTCAAAGCTGCAGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCATTACCGATCCAAGACTATAACATAGAGCTGGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGATCAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTTTAATAGAAATTGAAATGTATTCCGATGCAGTTGAAGTTCTTGCTATGGCAGAGGAATCATTTTTGCTCTGTGATCCCAAGATTCTCGAGCTTGTTGACAACCTCCCTATGATGGAAATAGACATTGTCTGGTGTTATTTCTTGCTCCGGGACATCAAATGCCTTTCAGATGCTGGTGTTCGCCTTGTGAGAGCAAGGAAAGGACTCGAGCGTGCTCATGGGAAGGATCTTTCTCGTGTGAGGCTCCTTCAAGCAGGTCAAAGTCCAGAGATGGCTATATATTTGAGGCTAGAGTTACTAGAAGGTGTGGTGGCATATCACACTGGTCAGAATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAAATTCTTGCAGCTACAAATACCCGATGAAACGCTGTCGCTAGTTATGGGTATGGGCTTTCAAGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGATTTTCTTATCGAAGAGCGGGCGAAAAAAGCCCAAAAGCGGGAGCAGGATCTTCAGAGACAAAGCGAAATACTTGAGCAGAAAAAGTATGGAGTAACACCCATGAAGAAAGCTGTTGATATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGAACTTGCTGCTGAATCCCTCCGGAGAAATGAGAACGATATTCAGAAGGCGCTTGATATACTCACAGACCCAAAAGTTAATTCAACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGGCAAGAACAACTGGTAGGCATATCAGTTGCTGAACTTGTGTCTATGGGCTTTGAACGAGGAAAAGCTACCTCTGCTTTGGAAGCTGGTGGCAGCCGAGAAGATACAATCCAAAGGCTACTATCTGCATCAGTAGCAAATCCAGGAACTACTACTACCTCTGTTATAAATGCAACAAGTAGCACAAACAATGTGGGTGCGGAGAGCAGTGGTTTTGGCGGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGAGCAAGCACATCCAGTGACGGCATGGAAGAAGAGCGGGACTCTGAGATAGAAGATGAAATAGCAGACGAGATTGCAAGGGTCGATGCTTTGTCGGCTTATGATATCAATCTTGACAAGGAAATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTTGTTGA

Protein Analysis

562

Amino Acids

62.08

Weight (kDa)

4.91

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 19 - 71 2.6e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1400
Acc36I ACCTGC 1 cut(s) 707
AccBSI CCGCTC 2 cut(s) 970, 1546
AccIII TCCGGA 1 cut(s) 1134
AciI CCGC 5 cut(s) 970, 991, 1433, 1452, 1546
AclWI GGATC 6 cut(s) 104, 205, 340, 530, 696, 1008
AcoI YGGCCR 1 cut(s) 1656
AcsI RAATTY 1 cut(s) 833
AcuI CTGAAG 4 cut(s) 258, 282, 836, 989
AfaI GTAC 3 cut(s) 25, 393, 1652
AfiI CCNNNNNNNGG 4 cut(s) 242, 574, 990, 991
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 9 cut(s) 476, 497, 713, 808, 893, 1197, 1217, 1289, 1637
AjnI CCWGG 3 cut(s) 1375, 1653, 1674
AjuI GAANNNNNNNTTGG 2 cut(s) 1177, 1209
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 6 cut(s) 75, 287, 316, 401, 1003, 1099
AlwI GGATC 6 cut(s) 104, 205, 340, 530, 696, 1008
AlwNI CAGNNNCTG 2 cut(s) 635, 1265
Ama87I CYCGRG 3 cut(s) 53, 548, 668
Aor13HI TCCGGA 1 cut(s) 1134
AoxI GGCC 1 cut(s) 1656
ApeKI GCWGC 7 cut(s) 230, 299, 302, 422, 841, 1121, 1326
ApoI RAATTY 1 cut(s) 833
AspLEI GCGC 1 cut(s) 1165
AsuC2I CCSGG 1 cut(s) 611
AvaI CYCGRG 3 cut(s) 53, 548, 668
BalI TGGCCA 1 cut(s) 1658
BanII GRGCYC 1 cut(s) 277
BauI CACGAG 2 cut(s) 288, 696
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 7 cut(s) 217, 286, 314, 409, 853, 1108, 1338
BccI CCATC 4 cut(s) 326, 424, 568, 727
BceAI ACGGC 3 cut(s) 175, 1250, 1546
BcgI CGANNNNNNTGC 4 cut(s) 146, 180, 820, 854
BciT130I CCWGG 3 cut(s) 1377, 1655, 1676
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 6 cut(s) 75, 287, 316, 401, 1003, 1099
BfaI CTAG 3 cut(s) 752, 761, 872
BfmI CTRYAG 2 cut(s) 300, 306
BfoI RGCGCY 1 cut(s) 1166
BfuAI ACCTGC 1 cut(s) 707
BisI GCNGC 7 cut(s) 231, 300, 303, 423, 842, 1122, 1327
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 7 cut(s) 232, 301, 304, 424, 843, 1123, 1328
Bme1390I CCNGG 4 cut(s) 611, 1377, 1655, 1676
BmeT110I CYCGRG 3 cut(s) 53, 548, 668
BmiI GGNNCC 1 cut(s) 707
BmrFI CCNGG 4 cut(s) 611, 1377, 1655, 1676
BmsI GCATC 9 cut(s) 154, 478, 622, 892, 1068, 1370, 1585, 1657, 1679
BplI GAGNNNNNCTC 4 cut(s) 1454, 1486, 1535, 1567
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 3 cut(s) 62, 1046, 1103
BpuMI CCSGG 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 1617
BsaJI CCNNGG 1 cut(s) 1674
BsaWI WCCGGW 1 cut(s) 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 574, 990, 991
Bse1I ACTGG 3 cut(s) 790, 1251, 1524
Bse3DI GCAATG 2 cut(s) 432, 1500
Bse8I GATNNNNATC 1 cut(s) 1617
BseAI TCCGGA 1 cut(s) 1134
BseBI CCWGG 3 cut(s) 1377, 1655, 1676
BseDI CCNNGG 1 cut(s) 1674
BseGI GGATG 5 cut(s) 907, 1501, 1520, 1670, 1672
BseJI GATNNNNATC 1 cut(s) 1617
BseLI CCNNNNNNNGG 4 cut(s) 242, 574, 990, 991
BseMI GCAATG 2 cut(s) 432, 1500
BseMII CTCAG 3 cut(s) 396, 1464, 1545
BseNI ACTGG 3 cut(s) 790, 1251, 1524
BseXI GCAGC 7 cut(s) 217, 286, 314, 409, 853, 1108, 1338
BshFI GGCC 1 cut(s) 1658
BsiHKAI GWGCWC 1 cut(s) 679
BsiHKCI CYCGRG 3 cut(s) 53, 548, 668
BsiSI CCGG 3 cut(s) 138, 610, 1135
BslFI GGGAC 2 cut(s) 626, 1562
BslI CCNNNNNNNGG 4 cut(s) 242, 574, 990, 991
BsmAI GTCTC 6 cut(s) 75, 287, 316, 401, 1003, 1099
BsmBI CGTCTC 3 cut(s) 75, 287, 1099
BsmFI GGGAC 2 cut(s) 626, 1562
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 1 cut(s) 1658
BsoBI CYCGRG 3 cut(s) 53, 548, 668
Bsp1286I GDGCHC 2 cut(s) 277, 679
Bsp13I TCCGGA 1 cut(s) 1134
Bsp143I GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 5 cut(s) 970, 991, 1433, 1452, 1546
BspANI GGCC 1 cut(s) 1658
BspCNI CTCAG 3 cut(s) 397, 1465, 1546
BspEI TCCGGA 1 cut(s) 1134
BspLI GGNNCC 1 cut(s) 707
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 707
BspPI GGATC 6 cut(s) 104, 205, 340, 530, 696, 1008
BspQI GCTCTTC 2 cut(s) 960, 1536
BsrBI CCGCTC 2 cut(s) 970, 1546
BsrDI GCAATG 2 cut(s) 432, 1500
BsrI ACTGG 3 cut(s) 790, 1251, 1524
BssECI CCNNGG 1 cut(s) 1674
BssMI GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
BssSI CACGAG 2 cut(s) 288, 696
Bst2BI CACGAG 2 cut(s) 288, 696
Bst2UI CCWGG 3 cut(s) 1377, 1655, 1676
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 2 cut(s) 960, 1536
BstC8I GCNNGC 3 cut(s) 675, 972, 1516
BstDEI CTNAG 5 cut(s) 93, 207, 405, 1473, 1554
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 5 cut(s) 907, 1501, 1520, 1670, 1672
BstH2I RGCGCY 1 cut(s) 1166
BstHHI GCGC 1 cut(s) 1165
BstKTI GATC 9 cut(s) 101, 112, 213, 348, 376, 415, 538, 691, 1003
BstMAI GTCTC 6 cut(s) 75, 287, 316, 401, 1003, 1099
BstMBI GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
BstNI CCWGG 3 cut(s) 1377, 1655, 1676
BstNSI RCATGY 2 cut(s) 76, 329
BstSCI CCNGG 4 cut(s) 609, 1375, 1653, 1674
BstSFI CTRYAG 2 cut(s) 300, 306
BstV1I GCAGC 7 cut(s) 217, 286, 314, 409, 853, 1108, 1338
BstX2I RGATCY 3 cut(s) 210, 688, 1000
BstYI RGATCY 3 cut(s) 210, 688, 1000
BsuRI GGCC 1 cut(s) 1658
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 5 cut(s) 907, 1501, 1520, 1670, 1672
BtsI GCAGTG 1 cut(s) 1447
BtsIMutI CAGTG 4 cut(s) 783, 812, 1447, 1531
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 3 cut(s) 675, 972, 1516
CaiI CAGNNNCTG 2 cut(s) 635, 1265
CfoI GCGC 1 cut(s) 1165
Csp6I GTAC 3 cut(s) 24, 392, 1651
CspCI CAANNNNNGTGG 2 cut(s) 1407, 1442
CviAII CATG 9 cut(s) 27, 73, 256, 326, 680, 827, 1054, 1534, 1660
CviQI GTAC 3 cut(s) 24, 392, 1651
DdeI CTNAG 5 cut(s) 93, 207, 405, 1473, 1554
DpnI GATC 9 cut(s) 100, 111, 212, 347, 375, 414, 537, 690, 1002
DpnII GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
EaeI YGGCCR 1 cut(s) 1656
Eam1104I CTCTTC 2 cut(s) 960, 1536
EarI CTCTTC 2 cut(s) 960, 1536
Eco24I GRGCYC 1 cut(s) 277
Eco32I GATATC 1 cut(s) 1615
Eco57I CTGAAG 4 cut(s) 258, 282, 836, 989
Eco88I CYCGRG 3 cut(s) 53, 548, 668
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 1375, 1653, 1674
EcoRV GATATC 1 cut(s) 1615
EcoT22I ATGCAT 1 cut(s) 1672
EcoT38I GRGCYC 1 cut(s) 277
Esp3I CGTCTC 3 cut(s) 75, 287, 1099
FaeI CATG 9 cut(s) 30, 76, 259, 329, 683, 830, 1057, 1537, 1663
FaqI GGGAC 2 cut(s) 626, 1562
FatI CATG 9 cut(s) 26, 72, 255, 325, 679, 826, 1053, 1533, 1659
FauI CCCGC 3 cut(s) 963, 984, 1539
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 7 cut(s) 231, 300, 303, 423, 842, 1122, 1327
FokI GGATG 5 cut(s) 914, 1507, 1508, 1657, 1679
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 7 cut(s) 231, 300, 303, 423, 842, 1122, 1327
FspBI CTAG 3 cut(s) 752, 761, 872
GlaI GCGC 1 cut(s) 1164
GluI GCNGC 7 cut(s) 231, 300, 303, 423, 842, 1122, 1327
HaeII RGCGCY 1 cut(s) 1166
HaeIII GGCC 1 cut(s) 1658
HapII CCGG 3 cut(s) 138, 610, 1135
HhaI GCGC 1 cut(s) 1165
Hin1II CATG 9 cut(s) 30, 76, 259, 329, 683, 830, 1057, 1537, 1663
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HpaII CCGG 3 cut(s) 138, 610, 1135
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 8 cut(s) 417, 487, 631, 792, 1008, 1158, 1474, 1555
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 2 cut(s) 161, 282
HpyAV CCTTC 6 cut(s) 236, 679, 719, 758, 892, 1153
HpyCH4III ACNGT 1 cut(s) 396
HpyF3I CTNAG 5 cut(s) 93, 207, 405, 1473, 1554
Hsp92II CATG 9 cut(s) 30, 76, 259, 329, 683, 830, 1057, 1537, 1663
HspAI GCGC 1 cut(s) 1163
Kpn2I TCCGGA 1 cut(s) 1134
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
LguI GCTCTTC 2 cut(s) 960, 1536
LmnI GCTCC 4 cut(s) 238, 612, 711, 994
Lsp1109I GCAGC 7 cut(s) 217, 286, 314, 409, 853, 1108, 1338
LweI GCATC 9 cut(s) 154, 478, 622, 892, 1068, 1370, 1585, 1657, 1679
MaeI CTAG 3 cut(s) 752, 761, 872
MaeIII GTNAC 4 cut(s) 441, 756, 1045, 1526
MalI GATC 9 cut(s) 100, 111, 212, 347, 375, 414, 537, 690, 1002
MbiI CCGCTC 2 cut(s) 970, 1546
MboI GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
MfeI CAATTG 1 cut(s) 185
MflI RGATCY 3 cut(s) 210, 688, 1000
MhlI GDGCHC 2 cut(s) 277, 679
MlsI TGGCCA 1 cut(s) 1658
MluCI AATT 7 cut(s) 58, 129, 185, 471, 833, 1192, 1632
MluNI TGGCCA 1 cut(s) 1658
MlyI GAGTC 5 cut(s) 58, 660, 1463, 1544, 1688
Mox20I TGGCCA 1 cut(s) 1658
Mph1103I ATGCAT 1 cut(s) 1672
MroI TCCGGA 1 cut(s) 1134
MscI TGGCCA 1 cut(s) 1658
MseI TTAA 3 cut(s) 195, 464, 1191
MslI CAYNNNNRTG 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 1658
MspI CCGG 3 cut(s) 138, 610, 1135
MspR9I CCNGG 4 cut(s) 611, 1377, 1655, 1676
MunI CAATTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 3 cut(s) 1377, 1655, 1676
NciI CCSGG 1 cut(s) 611
NdeII GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
NlaIII CATG 9 cut(s) 30, 76, 259, 329, 683, 830, 1057, 1537, 1663
NlaIV GGNNCC 1 cut(s) 707
NmeAIII GCCGAG 1 cut(s) 1355
NmuCI GTSAC 1 cut(s) 1526
NsiI ATGCAT 1 cut(s) 1672
NspI RCATGY 2 cut(s) 76, 329
PaeR7I CTCGAG 3 cut(s) 53, 548, 668
PciI ACATGT 1 cut(s) 72
PciSI GCTCTTC 2 cut(s) 960, 1536
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 5 cut(s) 116, 518, 544, 1127, 1217
PflFI GACNNNGTC 1 cut(s) 587
PfoI TCCNGGA 2 cut(s) 609, 1375
PkrI GCNGC 7 cut(s) 232, 301, 304, 424, 843, 1123, 1328
PleI GAGTC 5 cut(s) 58, 660, 1463, 1544, 1687
PpsI GAGTC 5 cut(s) 58, 660, 1463, 1544, 1687
PscI ACATGT 1 cut(s) 72
PsiI TTATAA 1 cut(s) 1400
Psp6I CCWGG 3 cut(s) 1375, 1653, 1674
PspGI CCWGG 3 cut(s) 1375, 1653, 1674
PspN4I GGNNCC 1 cut(s) 707
PspXI VCTCGAGB 1 cut(s) 668
PsrI GAACNNNNNNTAC 2 cut(s) 1372, 1404
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 635, 1265
PsuI RGATCY 3 cut(s) 210, 688, 1000
PsyI GACNNNGTC 1 cut(s) 587
RsaI GTAC 3 cut(s) 25, 393, 1652
RsaNI GTAC 3 cut(s) 24, 392, 1651
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 2 cut(s) 960, 1536
SaqAI TTAA 3 cut(s) 195, 464, 1191
SatI GCNGC 7 cut(s) 231, 300, 303, 423, 842, 1122, 1327
Sau3AI GATC 9 cut(s) 98, 109, 210, 345, 373, 412, 535, 688, 1000
SchI GAGTC 5 cut(s) 58, 660, 1463, 1544, 1688
ScrFI CCNGG 4 cut(s) 611, 1377, 1655, 1676
SduI GDGCHC 2 cut(s) 277, 679
SfaNI GCATC 9 cut(s) 154, 478, 622, 892, 1068, 1370, 1585, 1657, 1679
SfcI CTRYAG 2 cut(s) 300, 306
Sfr274I CTCGAG 3 cut(s) 53, 548, 668
SlaI CTCGAG 3 cut(s) 53, 548, 668
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 6 cut(s) 41, 53, 548, 668, 1025, 1082
SmoI CTYRAG 6 cut(s) 41, 53, 548, 668, 1025, 1082
Sse9I AATT 7 cut(s) 58, 129, 185, 471, 833, 1192, 1632
SsiI CCGC 5 cut(s) 970, 991, 1433, 1452, 1546
SspMI CTAG 3 cut(s) 752, 761, 872
StyD4I CCNGG 4 cut(s) 609, 1375, 1653, 1674
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 6 cut(s) 54, 549, 669, 963, 1220, 1593
TasI AATT 7 cut(s) 58, 129, 185, 471, 833, 1192, 1632
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 5 cut(s) 116, 518, 544, 1127, 1217
Tru1I TTAA 3 cut(s) 195, 464, 1191
Tru9I TTAA 3 cut(s) 195, 464, 1191
TscAI CASTG 4 cut(s) 790, 819, 1447, 1531
TseFI GTSAC 1 cut(s) 1526
TseI GCWGC 7 cut(s) 230, 299, 302, 422, 841, 1121, 1326
Tsp45I GTSAC 1 cut(s) 1526
TspDTI ATGAA 6 cut(s) 327, 873, 1070, 1493, 1500, 1581
TspGWI ACGGA 1 cut(s) 1508
TspRI CASTG 4 cut(s) 790, 819, 1447, 1531
Tth111I GACNNNGTC 1 cut(s) 587
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 1 cut(s) 833
XceI RCATGY 2 cut(s) 76, 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 1531
XhoI CTCGAG 3 cut(s) 53, 548, 668
XspI CTAG 3 cut(s) 752, 761, 872
Zsp2I ATGCAT 1 cut(s) 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.