Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01074

Orthogroup ID

OG0005734

Physical Location & Seq

Genomic Coordinates Forward (+)

13662 .. 24153

Gene Structure 10492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAATCATGTTTCTGTTTTTAGTTGGAATTATGTATTTTGGTATCAGCCTGAGAATTATAAACTATATCCAGCAAAGAAATTGATCAAGGCTGCTGCAACTGCTCTGTCGAAGAGACACTCTGATGGTTCACTGCCAATTGAAGATCAGAGTGGGAAGAAAGTACAAGTGGGATTGGAGACTGATCAGCGGGCAATCATGATCGGCCTGATGCTTCATACTAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCATTGGAAGTGCTCAGCATGGGGGAGGAGGCTTTCTCTCTCTGCGATCAAAAGGTTATTGAGCAAACCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCAGGAAAGGACTCTTCTCGTGTTCGACTCCTTCAGGCAGGTTGCTATTTCAGAGTGCACTACTGGAGCCTGCTGGAAGGGTGGTGGGTGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGAAGGTATTGACTTCTGCACAAGAGAAGTTCACCCAGCTTCAGGTGCTGAATGAATCTCTTTCTCTTGTGATGAGCATGGGCTTCAGAGAACAAGATGCAGAAAGAGCACTGAGGATGAGGAATCAAGATGTTTCCATCAGCCCTGAGCTTGCTGCTGAAGCACTACGAAGAAATGAGAATGACAGAGAAACGGCATTGGATTTGACAAATCCAGAGATCAATTCTTCCATACAGCAACATCTTGAATCAAGGAAAAGTAAACGACAGCGCCAAGCAGTAGATGCTTCAGTTGAAGCTCTTGTACGCATAGGCTTTGACAAATCATTAGCGGTCGAAGCTTTGCGGGGTGGAGGGACAATGGACCAAACAATCTGTCGACTGCTCTTGGGACAGGCACCAAACCCCACAAATGCTGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGCCAATCTGATGTCGCAACTGGCATTGCAAATTCTCTTGCTTCAATGCTTGATAATAAAAATCGTCAAGTCGGAGGTCCTTCAACGTCCAACTATGACATTGAAGTTTCTAGAGAAGGTGAAGCCATAAGTGAGTACTTGGCTCTGCTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

391

Amino Acids

43.65

Weight (kDa)

6.15

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12550
fragaria_vesca	FvH4_1g01990 FvH4_1g01990 FvH4_1g01990 FvH4_3g33700
malus_domestica	MD15G1162100.v1.1
prunus_persica	Prupe.7G257500_v2.0.a1
pyrus_communis	pycom15g14580
rosa_chinensis	RchiOBHm_Chr2g0087051 RchiOBHm_Chr5g0061231
rosa_laevigata	RLG00000015824 RLG00000035444
rosa_multiflora	Rmu_sc0007612.1_g000046 Rmu_sc0010698.1_g000014
rosa_roxburghii	Rroxscaffold_1G00019470 Rroxscaffold_2G00153940
rosa_rugosa	Rorug01G0471700.1 Rorug05G0339000
rosa_samantha	Rh2AG025200 Rh2BG025000 Rh2CG025500 Rh2DG025400 Rh5BG413000 Rh5CG437500
rosa_wichuraiana	Rw0G022890 Rw0G023050 Rw2G002000 Rw5G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	940
AccI	GTMKAC	1 cut(s)	922
AciI	CCGC	4 cut(s)	190, 875, 889, 1163
AcsI	RAATTY	3 cut(s)	387, 1036, 1156
AcuI	CTGAAG	5 cut(s)	440, 569, 613, 723, 816
AfaI	GTAC	3 cut(s)	165, 849, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	586, 973
AgsI	TTSAA	7 cut(s)	143, 419, 791, 839, 1050, 1089, 1109
AluBI	AGCT	4 cut(s)	583, 694, 842, 884
AluI	AGCT	4 cut(s)	583, 694, 842, 884
Alw21I	GWGCWC	3 cut(s)	276, 483, 655
Alw26I	GTCTC	3 cut(s)	109, 173, 354
Alw44I	GTGCAC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	92, 95, 698, 959
ApoI	RAATTY	3 cut(s)	387, 1036, 1156
ArsI	GACNNNNNNTTYG	2 cut(s)	904, 936
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	2 cut(s)	907, 1082
AsuHPI	GGTGA	2 cut(s)	568, 1136
AvaII	GGWCC	2 cut(s)	907, 1082
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	940
BarI	GAAGNNNNNNTAC	2 cut(s)	831, 863
BauI	CACGAG	1 cut(s)	441
Bbv12I	GWGCWC	3 cut(s)	276, 483, 655
BbvI	GCAGC	4 cut(s)	79, 82, 685, 946
BccI	CCATC	2 cut(s)	119, 689
BceAI	ACGGC	1 cut(s)	753
BclI	TGATCA	2 cut(s)	84, 184
BcoDI	GTCTC	3 cut(s)	109, 173, 354
BfaI	CTAG	1 cut(s)	1116
BfmI	CTRYAG	1 cut(s)	984
BfoI	RGCGCY	1 cut(s)	817
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	4 cut(s)	93, 96, 699, 960
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	4 cut(s)	94, 97, 700, 961
BmcAI	AGTACT	1 cut(s)	1142
Bme18I	GGWCC	2 cut(s)	907, 1082
BmgT120I	GGNCC	2 cut(s)	907, 1082
BmiI	GGNNCC	2 cut(s)	491, 942
BmsI	GCATC	4 cut(s)	201, 250, 631, 817
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 973
Bse1I	ACTGG	3 cut(s)	374, 491, 1030
Bse3DI	GCAATG	1 cut(s)	1029
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	586, 973
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	6 cut(s)	42, 289, 390, 647, 681, 963
BseNI	ACTGG	3 cut(s)	374, 491, 1030
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	4 cut(s)	79, 82, 685, 946
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	879
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	879
BsiHKAI	GWGCWC	3 cut(s)	276, 483, 655
BslFI	GGGAC	2 cut(s)	913, 948
BslI	CCNNNNNNNGG	2 cut(s)	586, 973
BsmAI	GTCTC	3 cut(s)	109, 173, 354
BsmFI	GGGAC	2 cut(s)	913, 948
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	276, 483, 655
Bsp143I	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	4 cut(s)	190, 875, 889, 1163
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	6 cut(s)	43, 288, 389, 648, 682, 964
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	491, 942
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	940
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	3 cut(s)	374, 491, 1030
BssMI	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	107, 442
BstAPI	GCANNNNNTGC	3 cut(s)	827, 983, 992
BstC8I	GCNNGC	3 cut(s)	192, 494, 696
BstDEI	CTNAG	7 cut(s)	51, 275, 356, 376, 656, 690, 972
BstF5I	GGATG	1 cut(s)	666
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	6 cut(s)	87, 148, 187, 204, 310, 765
BstMAI	GTCTC	3 cut(s)	109, 173, 354
BstMBI	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
BstMCI	CGRYCG	1 cut(s)	879
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 589, 650, 704, 827, 881, 983, 992
BstSFI	CTRYAG	1 cut(s)	984
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	79, 82, 685, 946
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	666
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	4 cut(s)	131, 384, 529, 653
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	3 cut(s)	192, 494, 696
CaiI	CAGNNNCTG	1 cut(s)	592
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	2 cut(s)	907, 1082
Csp6I	GTAC	3 cut(s)	164, 848, 1141
CviAII	CATG	5 cut(s)	8, 199, 280, 352, 622
CviQI	GTAC	3 cut(s)	164, 848, 1141
DdeI	CTNAG	7 cut(s)	51, 275, 356, 376, 656, 690, 972
DpnI	GATC	6 cut(s)	86, 147, 186, 203, 309, 764
DpnII	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
Eam1104I	CTCTTC	2 cut(s)	107, 442
EarI	CTCTTC	2 cut(s)	107, 442
Eco47I	GGWCC	2 cut(s)	907, 1082
Eco57I	CTGAAG	5 cut(s)	440, 569, 613, 723, 816
EcoO109I	RGGNCCY	1 cut(s)	1082
EcoRI	GAATTC	2 cut(s)	387, 1156
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	5 cut(s)	11, 202, 283, 355, 625
FaqI	GGGAC	2 cut(s)	913, 948
FatI	CATG	5 cut(s)	7, 198, 279, 351, 621
FauI	CCCGC	3 cut(s)	183, 882, 1156
FbaI	TGATCA	2 cut(s)	84, 184
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	4 cut(s)	93, 96, 699, 960
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	4 cut(s)	93, 96, 699, 960
FspBI	CTAG	1 cut(s)	1116
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	4 cut(s)	93, 96, 699, 960
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	817
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	5 cut(s)	11, 202, 283, 355, 625
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HincII	GTYRAC	1 cut(s)	923
HindII	GTYRAC	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	6 cut(s)	4, 434, 450, 599, 667, 791
HphI	GGTGA	2 cut(s)	568, 1136
Hpy166II	GTNNAC	5 cut(s)	131, 481, 576, 806, 923
Hpy188I	TCNGA	7 cut(s)	124, 150, 476, 632, 973, 1015, 1079
Hpy188III	TCNNGA	6 cut(s)	199, 416, 671, 758, 788, 1116
Hpy8I	GTNNAC	5 cut(s)	131, 481, 576, 806, 923
HpyAV	CCTTC	6 cut(s)	404, 464, 494, 541, 1095, 1115
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	8 cut(s)	98, 227, 263, 481, 563, 644, 986, 1034
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 589, 650, 704, 827, 881, 983, 992
HpyF3I	CTNAG	7 cut(s)	51, 275, 356, 376, 656, 690, 972
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	5 cut(s)	11, 202, 283, 355, 625
HspAI	GCGC	1 cut(s)	814
Ksp22I	TGATCA	2 cut(s)	84, 184
Kzo9I	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	4 cut(s)	79, 82, 685, 946
LweI	GCATC	4 cut(s)	201, 250, 631, 817
MaeI	CTAG	1 cut(s)	1116
MaeII	ACGT	1 cut(s)	1091
MalI	GATC	6 cut(s)	86, 147, 186, 203, 309, 764
MboI	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
MboII	GAAGA	6 cut(s)	124, 155, 169, 429, 726, 762
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	3 cut(s)	276, 483, 655
MlyI	GAGTC	2 cut(s)	428, 444
MmeI	TCCRAC	3 cut(s)	5, 1057, 1119
MnlI	CCTC	7 cut(s)	280, 283, 651, 657, 890, 967, 1073
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	123, 222
MspA1I	CMGCKG	2 cut(s)	190, 1163
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	8 cut(s)	101, 589, 650, 704, 827, 881, 983, 992
NdeII	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
NlaIII	CATG	5 cut(s)	11, 202, 283, 355, 625
NlaIV	GGNNCC	2 cut(s)	491, 942
NsiI	ATGCAT	1 cut(s)	265
PagI	TCATGA	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	4, 599, 667, 791
PkrI	GCNGC	4 cut(s)	94, 97, 700, 961
PleI	GAGTC	2 cut(s)	428, 444
PpsI	GAGTC	2 cut(s)	428, 444
PpuMI	RGGWCCY	1 cut(s)	1082
PsiI	TTATAA	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	491, 942
PspPI	GGNCC	2 cut(s)	907, 1082
PspPPI	RGGWCCY	1 cut(s)	1082
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	1 cut(s)	592
RsaI	GTAC	3 cut(s)	165, 849, 1142
RsaNI	GTAC	3 cut(s)	164, 848, 1141
RseI	CAYNNNNRTG	2 cut(s)	123, 222
SalI	GTCGAC	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	93, 96, 699, 960
Sau3AI	GATC	6 cut(s)	84, 145, 184, 201, 307, 762
Sau96I	GGNCC	2 cut(s)	907, 1082
ScaI	AGTACT	1 cut(s)	1142
SchI	GAGTC	2 cut(s)	428, 444
SduI	GDGCHC	3 cut(s)	276, 483, 655
SfaNI	GCATC	4 cut(s)	201, 250, 631, 817
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	2 cut(s)	907, 1082
SmiMI	CAYNNNNRTG	2 cut(s)	123, 222
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SsiI	CCGC	4 cut(s)	190, 875, 889, 1163
SspMI	CTAG	1 cut(s)	1116
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	4 cut(s)	110, 448, 879, 922
TatI	WGTACW	2 cut(s)	163, 1140
TfiI	GAWTC	4 cut(s)	4, 599, 667, 791
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	4 cut(s)	138, 384, 529, 660
TseI	GCWGC	4 cut(s)	92, 95, 698, 959
TspDTI	ATGAA	5 cut(s)	17, 206, 340, 560, 612
TspRI	CASTG	4 cut(s)	138, 384, 529, 660
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	907, 1082
XapI	RAATTY	3 cut(s)	387, 1036, 1156
XbaI	TCTAGA	1 cut(s)	1115
XmiI	GTMKAC	1 cut(s)	922
XspI	CTAG	1 cut(s)	1116
ZrmI	AGTACT	1 cut(s)	1142
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.