Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005734

Physical Location & Seq

Genomic Coordinates Reverse (-)

23770769 .. 23773299

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGCCCAAATTAAAAAAAAATCATTGTTCTTGGGAGAGCGACCTTCTAGGGATTGGATCGAATGGAGGGTTGAGCCGAGAAGAGGAAGAGGCGGAGTTTGGGGCATGTTGGTTTTTGATTGAGAGTGATTGTGGTGGTCCGTTGGGGAGTATCAATGCTGAGACAAGAGGTTGCAAGCGATCGAACTGCAAGCCCAACTCGATCAATCTGGTCTGCGCAGGCAAAGTATTGAAGGATGGAGATGGGAGCGAGAATTTGACCCAATTAGGTATTAAGAACAACGCTAAGGTTCTTGCTAGTAGGGTTAGTGCTCAGGAGGGCAAGTCTTTGGGTGAGGAGTTGATGGCCGAAGGCGAACGCTCCCGGAGATTGGCTCGAATCAAGGCAGCTGCGACTGCAATGGCCAAGAGAGATGCAGATGGTTCATTGCCAATGGAAAACTTCAATATTGAACTTGAAGATCAAAGCGGAAAGAAAGTAAAGATGGGAGCCGAGACTGATCAGCAGGCAATCATGATGGGTCTGATGCTTCATACAGATGCAAAGAAACTGATTAAAGAACAGAATTATAAAGATGCATTGGAGGTGTTGGGCATGGGAGAGGAGGCCTTCTCTCTATGCGACCCCAAGGTTATTGAGCTGGTTGACAATCCTTGTATACTGCAAATTGATATGGTTTGGTGTTATTTCATGCTCAGAGACATCAACTGTCTCTCGGTGGCGGGAGTTCGGCTTGAGAAGGCTAGAGAAGGACTCGAAAGAGCTCACGGGAAGGACGCTTCTCGTGTGAGACTGCTTCAGGCAGGTAGGTATCCGGAGCGTGCACTACATTTGAGACTGGAGCTGCTTGAAGGGGTGGTGGCGTATCATAGTGGTGAGGTTGACAAATCTAAGAAGGTTCTGACTTCTGCCCAAGAAAAGTTCAGGCTGCTACAAGTGTCGGATGAATCTGTTTCACTTGTGATGAGCATGGGATTTAAAGAACTAGATGCAAAAAGGGCTTTGCGGATGAGCAATCAAGATGTTTCCAGTGCCGTTGATTTTCTTGTTGAGCAGAAGGCAAAGAGAGACCAAAAACGGGAAGATGATATCCGGCGGCAACATGAAATTAAGGAGCAAAAGACATATGAGCTTGCTGCTGAAATGCTTAGAAGAAATGAGAATGACAGTGAGAAGGCATTAGATGATTTGACAGATCCAGAAACTAATTCTTCCATACAAGAACAACTTGAATCAAGGAAAAGGAAACGTCAGCGCCGAGCATTAGATGCTTCAGCTGACGCACTTGTACGCATGGGCTTTGAAAGATCATTAGTAGACAAAGCTTTGCAGGCTGGAGGGACAATGGACCAAGTAATCCATCGATTACTCTCGTTACAAGCATCAAATCCGACAAATGGTGTTAGCCAATCAGCGGCAATCTCCACAGTTTCTGATAACAACAATAGCCAATCTGATGCTGCTAGTAACATTGCGAATTCTCTTGCTTCAATGCTTGAGAATCAAAATGATCAAGCCGGCGGTTCTAGTAATGCGTCAGAGCTTCAGAATCAAAAAGATCAAGCTGGTGGTTCTAGTAATGCATCAAAGCGTGATGCAGAAATGGAGAGTGAACTTGCTGAAGAACTAGCACAACAAGACGCTCTCTCTGACTATGACCTTGAAGTTACCAAAGAGGGTGAAGCCATAGCCGAGTACTTGGCTCTTCTGGATTCAGCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

574

Amino Acids

63.11

Weight (kDa)

5.09

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	318 - 352	6.5e-06	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12550
fragaria_vesca	FvH4_1g01990 FvH4_1g01990 FvH4_1g01990 FvH4_3g33700
malus_domestica	MD15G1162100.v1.1
prunus_persica	Prupe.7G257500_v2.0.a1
pyrus_communis	pycom15g14580
rosa_chinensis	RchiOBHm_Chr2g0087051 RchiOBHm_Chr5g0061231
rosa_laevigata	RLG00000015824 RLG00000035444
rosa_multiflora	Rmu_sc0007612.1_g000046 Rmu_sc0010698.1_g000014
rosa_roxburghii	Rroxscaffold_1G00019470 Rroxscaffold_2G00153940
rosa_rugosa	Rorug01G0471700.1 Rorug05G0339000
rosa_samantha	Rh2AG025200 Rh2BG025000 Rh2CG025500 Rh2DG025400 Rh5BG413000 Rh5CG437500
rosa_wichuraiana	Rw0G022890 Rw0G023050 Rw2G002000 Rw5G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
Acc16I	TGCGCA	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	658, 1317
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	7 cut(s)	92, 468, 722, 1006, 1096, 1415, 1521
AclWI	GGATC	2 cut(s)	64, 1190
AcoI	YGGCCR	2 cut(s)	345, 402
AcsI	RAATTY	2 cut(s)	253, 1477
AcuI	CTGAAG	4 cut(s)	782, 1257, 1529, 1641
AfaI	GTAC	2 cut(s)	1290, 1697
AfiI	CCNNNNNNNGG	5 cut(s)	82, 370, 1078, 1397, 1414
AgsI	TTSAA	9 cut(s)	232, 445, 452, 458, 851, 1232, 1304, 1491, 1664
AluBI	AGCT	9 cut(s)	389, 640, 764, 844, 1132, 1277, 1325, 1543, 1565
AluI	AGCT	9 cut(s)	389, 640, 764, 844, 1132, 1277, 1325, 1543, 1565
Alw21I	GWGCWC	3 cut(s)	313, 766, 826
Alw26I	GTCTC	7 cut(s)	155, 488, 693, 716, 784, 829, 1062
Alw44I	GTGCAC	1 cut(s)	822
AlwI	GGATC	2 cut(s)	64, 1190
AlwNI	CAGNNNCTG	1 cut(s)	1433
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	3 cut(s)	345, 402, 606
ApaLI	GTGCAC	1 cut(s)	822
ApeKI	GCWGC	6 cut(s)	386, 389, 844, 928, 1136, 1460
ApoI	RAATTY	2 cut(s)	253, 1477
AspLEI	GCGC	2 cut(s)	218, 1257
AspS9I	GGNCC	2 cut(s)	137, 1348
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	3 cut(s)	344, 887, 1691
AvaII	GGWCC	2 cut(s)	137, 1348
BaeGI	GKGCMC	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	766
BauI	CACGAG	1 cut(s)	783
Bbv12I	GWGCWC	3 cut(s)	313, 766, 826
BbvI	GCAGC	6 cut(s)	376, 398, 831, 915, 1123, 1447
BccI	CCATC	7 cut(s)	230, 236, 337, 413, 478, 511, 1368
BceAI	ACGGC	1 cut(s)	1019
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciVI	GTATCC	1 cut(s)	822
BclI	TGATCA	2 cut(s)	499, 1510
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	7 cut(s)	155, 488, 693, 716, 784, 829, 1062
BfaI	CTAG	8 cut(s)	47, 297, 744, 986, 1464, 1527, 1575, 1628
BfoI	RGCGCY	1 cut(s)	1258
BfuAI	ACCTGC	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	8 cut(s)	387, 390, 845, 929, 1097, 1137, 1416, 1461
BlsI	GCNGC	8 cut(s)	388, 391, 846, 930, 1098, 1138, 1417, 1462
BmcAI	AGTACT	1 cut(s)	1697
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	137, 1348
BmgT120I	GGNCC	2 cut(s)	137, 1348
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	364
BplI	GAGNNNNNCTC	6 cut(s)	358, 390, 596, 628, 738, 770
BpmI	CTGGAG	2 cut(s)	860, 1356
Bpu10I	CCTNAGC	2 cut(s)	285, 312
BpuEI	CTTGAG	2 cut(s)	755, 1517
BpuMI	CCSGG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	1363
BsaI	GGTCTC	1 cut(s)	1062
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 370, 1078, 1397, 1414
Bse118I	RCCGGY	1 cut(s)	1517
Bse1I	ACTGG	2 cut(s)	843, 1029
Bse3DI	GCAATG	3 cut(s)	405, 425, 1470
BseAI	TCCGGA	1 cut(s)	814
BseCI	ATCGAT	1 cut(s)	1363
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	241, 949, 1014
BseLI	CCNNNNNNNGG	5 cut(s)	82, 370, 1078, 1397, 1414
BseMI	GCAATG	3 cut(s)	405, 425, 1470
BseMII	CTCAG	3 cut(s)	150, 326, 709
BseNI	ACTGG	2 cut(s)	843, 1029
BseRI	GAGGAG	2 cut(s)	350, 617
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	6 cut(s)	376, 398, 831, 915, 1123, 1447
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	3 cut(s)	347, 404, 608
BshVI	ATCGAT	1 cut(s)	1363
BsiEI	CGRYCG	1 cut(s)	182
BsiHKAI	GWGCWC	3 cut(s)	313, 766, 826
BsiSI	CCGG	4 cut(s)	364, 815, 1093, 1518
BslFI	GGGAC	1 cut(s)	1354
BslI	CCNNNNNNNGG	5 cut(s)	82, 370, 1078, 1397, 1414
BsmAI	GTCTC	7 cut(s)	155, 488, 693, 716, 784, 829, 1062
BsmFI	GGGAC	1 cut(s)	1354
BsnI	GGCC	3 cut(s)	347, 404, 608
Bso31I	GGTCTC	1 cut(s)	1062
Bsp1286I	GDGCHC	3 cut(s)	313, 766, 826
Bsp13I	TCCGGA	1 cut(s)	814
Bsp143I	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
BspACI	CCGC	7 cut(s)	92, 468, 722, 1006, 1096, 1415, 1521
BspANI	GGCC	3 cut(s)	347, 404, 608
BspCNI	CTCAG	3 cut(s)	151, 325, 708
BspDI	ATCGAT	1 cut(s)	1363
BspEI	TCCGGA	1 cut(s)	814
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	64, 1190
BspQI	GCTCTTC	1 cut(s)	1710
BspTNI	GGTCTC	1 cut(s)	1062
BsrDI	GCAATG	3 cut(s)	405, 425, 1470
BsrFI	RCCGGY	1 cut(s)	1517
BsrI	ACTGG	2 cut(s)	843, 1029
BssAI	RCCGGY	1 cut(s)	1517
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
BssNAI	GTATAC	1 cut(s)	659
BssSI	CACGAG	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	783
Bst4CI	ACNGT	4 cut(s)	710, 1169, 1429, 1722
Bst6I	CTCTTC	3 cut(s)	75, 81, 1710
BstAPI	GCANNNNNTGC	1 cut(s)	1268
BstC8I	GCNNGC	8 cut(s)	176, 191, 220, 507, 822, 1134, 1332, 1519
BstDEI	CTNAG	6 cut(s)	159, 285, 312, 695, 891, 1148
BstF5I	GGATG	3 cut(s)	241, 949, 1014
BstH2I	RGCGCY	1 cut(s)	1258
BstHHI	GCGC	2 cut(s)	218, 1257
BstKTI	GATC	9 cut(s)	59, 182, 204, 463, 502, 1198, 1310, 1513, 1561
BstMAI	GTCTC	7 cut(s)	155, 488, 693, 716, 784, 829, 1062
BstMBI	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 998, 1268, 1331
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	6 cut(s)	376, 398, 831, 915, 1123, 1447
BstX2I	RGATCY	1 cut(s)	1195
BstYI	RGATCY	1 cut(s)	1195
BstZ17I	GTATAC	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	1363
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	3 cut(s)	347, 404, 608
BsuTUI	ATCGAT	1 cut(s)	1363
BtsCI	GGATG	3 cut(s)	241, 949, 1014
BtsIMutI	CAGTG	2 cut(s)	1036, 1174
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	8 cut(s)	176, 191, 220, 507, 822, 1134, 1332, 1519
CaiI	CAGNNNCTG	1 cut(s)	1433
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	2 cut(s)	218, 1257
Cfr10I	RCCGGY	1 cut(s)	1517
Cfr13I	GGNCC	2 cut(s)	137, 1348
ClaI	ATCGAT	1 cut(s)	1363
CseI	GACGC	4 cut(s)	785, 1289, 1524, 1649
Csp6I	GTAC	2 cut(s)	1289, 1696
CviAII	CATG	7 cut(s)	105, 514, 595, 691, 970, 1103, 1294
CviQI	GTAC	2 cut(s)	1289, 1696
DdeI	CTNAG	6 cut(s)	159, 285, 312, 695, 891, 1148
DpnI	GATC	9 cut(s)	58, 181, 203, 462, 501, 1197, 1309, 1512, 1560
DpnII	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
DraI	TTTAAA	1 cut(s)	979
EaeI	YGGCCR	2 cut(s)	345, 402
Eam1104I	CTCTTC	3 cut(s)	75, 81, 1710
EarI	CTCTTC	3 cut(s)	75, 81, 1710
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	764
Eco130I	CCWWGG	1 cut(s)	627
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	766
Eco31I	GGTCTC	1 cut(s)	1062
Eco32I	GATATC	1 cut(s)	1090
Eco47I	GGWCC	2 cut(s)	137, 1348
Eco53kI	GAGCTC	1 cut(s)	764
Eco57I	CTGAAG	4 cut(s)	782, 1257, 1529, 1641
EcoICRI	GAGCTC	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	1477
EcoRV	GATATC	1 cut(s)	1090
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	2 cut(s)	580, 1585
EcoT38I	GRGCYC	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	7 cut(s)	108, 517, 598, 694, 973, 1106, 1297
FalI	AAGNNNNNCTT	2 cut(s)	1212, 1244
FaqI	GGGAC	1 cut(s)	1354
FatI	CATG	7 cut(s)	104, 513, 594, 690, 969, 1102, 1293
FauI	CCCGC	1 cut(s)	715
FauNDI	CATATG	1 cut(s)	1126
FbaI	TGATCA	2 cut(s)	499, 1510
FblI	GTMKAC	2 cut(s)	658, 1317
Fnu4HI	GCNGC	8 cut(s)	387, 390, 845, 929, 1097, 1137, 1416, 1461
FokI	GGATG	3 cut(s)	248, 956, 1021
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	8 cut(s)	387, 390, 845, 929, 1097, 1137, 1416, 1461
FspBI	CTAG	8 cut(s)	47, 297, 744, 986, 1464, 1527, 1575, 1628
FspI	TGCGCA	1 cut(s)	217
GlaI	GCGC	2 cut(s)	217, 1256
GluI	GCNGC	8 cut(s)	387, 390, 845, 929, 1097, 1137, 1416, 1461
GsuI	CTGGAG	2 cut(s)	860, 1356
HaeII	RGCGCY	1 cut(s)	1258
HaeIII	GGCC	3 cut(s)	347, 404, 608
HapII	CCGG	4 cut(s)	364, 815, 1093, 1518
HgaI	GACGC	4 cut(s)	785, 1289, 1524, 1649
HhaI	GCGC	2 cut(s)	218, 1257
Hin1II	CATG	7 cut(s)	108, 517, 598, 694, 973, 1106, 1297
Hin6I	GCGC	2 cut(s)	216, 1255
HinP1I	GCGC	2 cut(s)	216, 1255
HincII	GTYRAC	2 cut(s)	646, 883
HindII	GTYRAC	2 cut(s)	646, 883
HindIII	AAGCTT	1 cut(s)	1323
HinfI	GANTC	7 cut(s)	378, 753, 947, 1232, 1501, 1549, 1712
HpaII	CCGG	4 cut(s)	364, 815, 1093, 1518
HphI	GGTGA	3 cut(s)	344, 887, 1691
Hpy166II	GTNNAC	6 cut(s)	646, 659, 824, 883, 1318, 1613
Hpy188III	TCNNGA	6 cut(s)	314, 514, 815, 1019, 1199, 1709
Hpy8I	GTNNAC	6 cut(s)	646, 659, 824, 883, 1318, 1613
HpyCH4III	ACNGT	4 cut(s)	710, 1169, 1429, 1722
HpyCH4IV	ACGT	1 cut(s)	1249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 998, 1268, 1331
HpyF3I	CTNAG	6 cut(s)	159, 285, 312, 695, 891, 1148
HpySE526I	ACGT	1 cut(s)	1249
Hsp92II	CATG	7 cut(s)	108, 517, 598, 694, 973, 1106, 1297
HspAI	GCGC	2 cut(s)	216, 1255
Kpn2I	TCCGGA	1 cut(s)	814
KroI	GCCGGC	1 cut(s)	1517
KroNI	GCCGGC	1 cut(s)	1519
Ksp22I	TGATCA	2 cut(s)	499, 1510
Kzo9I	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
LguI	GCTCTTC	1 cut(s)	1710
LmnI	GCTCC	6 cut(s)	246, 365, 488, 817, 841, 1114
Lsp1109I	GCAGC	6 cut(s)	376, 398, 831, 915, 1123, 1447
MaeI	CTAG	8 cut(s)	47, 297, 744, 986, 1464, 1527, 1575, 1628
MaeII	ACGT	1 cut(s)	1249
MaeIII	GTNAC	3 cut(s)	1374, 1466, 1666
MalI	GATC	9 cut(s)	58, 181, 203, 462, 501, 1197, 1309, 1512, 1560
MboI	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
MboII	GAAGA	8 cut(s)	92, 98, 470, 1094, 1164, 1203, 1634, 1697
MflI	RGATCY	1 cut(s)	1195
MhlI	GDGCHC	3 cut(s)	313, 766, 826
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	8 cut(s)	8, 253, 263, 565, 666, 1107, 1207, 1477
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	2 cut(s)	921, 1415
Mox20I	TGGCCA	1 cut(s)	404
Mph1103I	ATGCAT	2 cut(s)	580, 1585
MroI	TCCGGA	1 cut(s)	814
MroNI	GCCGGC	1 cut(s)	1517
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	5 cut(s)	11, 273, 555, 978, 1110
MslI	CAYNNNNRTG	2 cut(s)	537, 873
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	3 cut(s)	389, 1277, 1415
MspI	CCGG	4 cut(s)	364, 815, 1093, 1518
MspR9I	CCNGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	395, 998, 1268, 1331
NaeI	GCCGGC	1 cut(s)	1519
NciI	CCSGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
NgoMIV	GCCGGC	1 cut(s)	1517
NlaIII	CATG	7 cut(s)	108, 517, 598, 694, 973, 1106, 1297
NlaIV	GGNNCC	1 cut(s)	490
NmeAIII	GCCGAG	4 cut(s)	101, 517, 1283, 1717
NsbI	TGCGCA	1 cut(s)	217
NsiI	ATGCAT	2 cut(s)	580, 1585
NspI	RCATGY	1 cut(s)	108
PagI	TCATGA	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	1710
PcsI	WCGNNNNNNNCGW	1 cut(s)	1255
PdiI	GCCGGC	1 cut(s)	1519
PfeI	GAWTC	6 cut(s)	378, 947, 1232, 1501, 1549, 1712
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	8 cut(s)	388, 391, 846, 930, 1098, 1138, 1417, 1462
Ple19I	CGATCG	1 cut(s)	182
PleI	GAGTC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	137, 1348
PstNI	CAGNNNCTG	1 cut(s)	1433
PsuI	RGATCY	1 cut(s)	1195
PvuI	CGATCG	1 cut(s)	182
PvuII	CAGCTG	2 cut(s)	389, 1277
RsaI	GTAC	2 cut(s)	1290, 1697
RsaNI	GTAC	2 cut(s)	1289, 1696
RseI	CAYNNNNRTG	2 cut(s)	537, 873
SacI	GAGCTC	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	1710
SaqAI	TTAA	5 cut(s)	11, 273, 555, 978, 1110
SatI	GCNGC	8 cut(s)	387, 390, 845, 929, 1097, 1137, 1416, 1461
Sau3AI	GATC	9 cut(s)	56, 179, 201, 460, 499, 1195, 1307, 1510, 1558
Sau96I	GGNCC	2 cut(s)	137, 1348
ScaI	AGTACT	1 cut(s)	1697
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	3 cut(s)	313, 766, 826
SinI	GGWCC	2 cut(s)	137, 1348
SmiMI	CAYNNNNRTG	2 cut(s)	537, 873
SmlI	CTYRAG	2 cut(s)	734, 1496
SmoI	CTYRAG	2 cut(s)	734, 1496
Sse9I	AATT	8 cut(s)	8, 253, 263, 565, 666, 1107, 1207, 1477
SseBI	AGGCCT	1 cut(s)	608
SsiI	CCGC	7 cut(s)	92, 468, 722, 1006, 1096, 1415, 1521
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	8 cut(s)	47, 297, 744, 986, 1464, 1527, 1575, 1628
SstI	GAGCTC	1 cut(s)	766
StuI	AGGCCT	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	4 cut(s)	710, 1169, 1429, 1722
TaiI	ACGT	1 cut(s)	1252
TaqI	TCGA	6 cut(s)	59, 182, 200, 376, 756, 1363
TasI	AATT	8 cut(s)	8, 253, 263, 565, 666, 1107, 1207, 1477
TatI	WGTACW	1 cut(s)	1695
TauI	GCSGC	2 cut(s)	1099, 1418
TfiI	GAWTC	6 cut(s)	378, 947, 1232, 1501, 1549, 1712
Tru1I	TTAA	5 cut(s)	11, 273, 555, 978, 1110
Tru9I	TTAA	5 cut(s)	11, 273, 555, 978, 1110
TscAI	CASTG	2 cut(s)	1036, 1174
TseI	GCWGC	6 cut(s)	386, 389, 844, 928, 1136, 1460
TspDTI	ATGAA	5 cut(s)	414, 521, 679, 960, 1119
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	1036, 1174
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	137, 1348
XapI	RAATTY	2 cut(s)	253, 1477
XceI	RCATGY	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	658, 1317
XspI	CTAG	8 cut(s)	47, 297, 744, 986, 1464, 1527, 1575, 1628
ZrmI	AGTACT	1 cut(s)	1697
Zsp2I	ATGCAT	2 cut(s)	580, 1585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.