AT2G14760

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011699
Physical Location & Seq
Reverse (-)
6321587 .. 6323397
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14760.1

Sequence Viewer

Length: 987 bp
ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATATACAGAGGAAGCTGACTTTATGAATCAGCTCCTTGCCTCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACAACCGCCACACTCACGGCCTACCACCACCAGGGTTCTCAATGGAATGGTGGCTTTTGCTTCTCTCAGGAGAGCAGTAGTTATAGTGGTTACTGCGCGGCGATGCCACGGCAAGAAGAAGATAACAATGGGATGGAGGACGCGACAATCAACACGAACTTGTACCTTGTTGGTGAAGAGACAAGTGAATGTGATGCGACGGAATACTCCGGTAAAAGCCTCTTGCCTTTGGAGACTGTCGCAGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACCACGACCACTGATGAGAAAATGTTCAACCAATGTGAGAGTTCAAAGAAGAGGACGCGTGCCACAACAACTGATAAGAACAAGAGAGCCAACAAGGCACGAAGGAGCCAGAAATGCGTAGAGATGAGTGGCGAAAATGAAAATAGCGGCGAAGAAGAATATACGGAGAAGGCTGCGGGGAAGAGAAAGACCAAACCACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTTGTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACTAGGGCCAGCCGCGGCGCGGCCACAGATCCTCAAAGCCTTTACGCAAGGAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGGAACAAAGGTTGATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTCTACAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACAACGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

328

Amino Acids

36.5

Weight (kDa)

5.04

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 253 - 293 1.3e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 254 - 300 1.4e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 215, 260, 460, 723, 728
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 1 cut(s) 869
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 2 cut(s) 281, 858
AfiI CCNNNNNNNGG 3 cut(s) 101, 148, 727
AflII CTTAAG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 2 cut(s) 430, 447
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 4 cut(s) 56, 73, 880, 900
AluI AGCT 4 cut(s) 56, 73, 880, 900
Alw21I GWGCWC 2 cut(s) 26, 902
Alw26I GTCTC 4 cut(s) 110, 290, 344, 642
AlwI GGATC 1 cut(s) 731
AoxI GGCC 5 cut(s) 28, 135, 714, 729, 952
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 1 cut(s) 869
ArsI GACNNNNNNTTYG 2 cut(s) 607, 639
Asp700I GAANNNNTTC 1 cut(s) 425
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 3 cut(s) 215, 728, 925
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 302
AvrII CCTAGG 1 cut(s) 31
BanII GRGCYC 1 cut(s) 902
BarI GAAGNNNNNNTAC 2 cut(s) 840, 872
Bbv12I GWGCWC 2 cut(s) 26, 902
BbvI GCAGC 1 cut(s) 562
BccI CCATC 2 cut(s) 244, 665
BceAI ACGGC 3 cut(s) 150, 242, 718
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 4 cut(s) 110, 290, 344, 642
BfaI CTAG 2 cut(s) 32, 711
BfmI CTRYAG 2 cut(s) 383, 875
BfrI CTTAAG 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 497
BisI GCNGC 7 cut(s) 216, 550, 576, 608, 721, 724, 729
BlnI CCTAGG 1 cut(s) 31
BlsI GCNGC 7 cut(s) 217, 551, 577, 609, 722, 725, 730
Bme1390I CCNGG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 714
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 210, 301
Bpu10I CCTNAGC 1 cut(s) 788
BsaJI CCNNGG 5 cut(s) 9, 31, 148, 224, 721
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 148, 727
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 5 cut(s) 9, 31, 148, 224, 721
BseGI GGATG 3 cut(s) 255, 634, 921
BseLI CCNNNNNNNGG 3 cut(s) 101, 148, 727
BseMII CTCAG 2 cut(s) 197, 381
BseXI GCAGC 1 cut(s) 562
Bsh1236I CGCG 5 cut(s) 215, 260, 460, 723, 728
BshFI GGCC 5 cut(s) 30, 137, 716, 731, 954
BsiHKAI GWGCWC 2 cut(s) 26, 902
BsiSI CCGG 2 cut(s) 27, 327
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 3 cut(s) 101, 148, 727
BsmAI GTCTC 4 cut(s) 110, 290, 344, 642
BsmFI GGGAC 1 cut(s) 794
BsnI GGCC 5 cut(s) 30, 137, 716, 731, 954
Bsp1286I GDGCHC 2 cut(s) 26, 902
Bsp143I GATC 2 cut(s) 736, 907
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 5 cut(s) 30, 137, 716, 731, 954
BspCNI CTCAG 2 cut(s) 196, 382
BspFNI CGCG 5 cut(s) 215, 260, 460, 723, 728
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 1 cut(s) 731
BspTI CTTAAG 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 5 cut(s) 9, 31, 148, 224, 721
BssMI GATC 2 cut(s) 736, 907
BssT1I CCWWGG 2 cut(s) 9, 31
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 355, 644
Bst6I CTCTTC 4 cut(s) 288, 446, 578, 760
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 462, 718
BstDEI CTNAG 4 cut(s) 183, 390, 684, 788
BstDSI CCRYGG 3 cut(s) 9, 224, 721
BstF5I GGATG 3 cut(s) 255, 634, 921
BstFNI CGCG 5 cut(s) 215, 260, 460, 723, 728
BstHHI GCGC 3 cut(s) 215, 728, 925
BstKTI GATC 2 cut(s) 739, 910
BstMAI GTCTC 4 cut(s) 110, 290, 344, 642
BstMBI GATC 2 cut(s) 736, 907
BstMWI GCNNNNNNNGC 3 cut(s) 497, 516, 929
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 2 cut(s) 383, 875
BstUI CGCG 5 cut(s) 215, 260, 460, 723, 728
BstV1I GCAGC 1 cut(s) 562
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 5 cut(s) 30, 137, 716, 731, 954
BtgI CCRYGG 3 cut(s) 9, 224, 721
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 3 cut(s) 255, 634, 921
BtsIMutI CAGTG 2 cut(s) 411, 974
Cac8I GCNNGC 2 cut(s) 462, 718
CfoI GCGC 3 cut(s) 215, 728, 925
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 714
Cfr42I CCGCGG 1 cut(s) 724
CseI GACGC 2 cut(s) 266, 466
Csp6I GTAC 2 cut(s) 280, 857
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 280, 857
DdeI CTNAG 4 cut(s) 183, 390, 684, 788
DpnI GATC 2 cut(s) 738, 909
DpnII GATC 2 cut(s) 736, 907
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 4 cut(s) 288, 446, 578, 760
EarI CTCTTC 4 cut(s) 288, 446, 578, 760
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 900
Eco130I CCWWGG 2 cut(s) 9, 31
Eco24I GRGCYC 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 900
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 9, 31
EcoT38I GRGCYC 1 cut(s) 902
ErhI CCWWGG 2 cut(s) 9, 31
FaeI CATG 1 cut(s) 13
FaqI GGGAC 1 cut(s) 794
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 571
Fnu4HI GCNGC 7 cut(s) 216, 550, 576, 608, 721, 724, 729
FokI GGATG 3 cut(s) 262, 641, 928
FriOI GRGCYC 1 cut(s) 902
Fsp4HI GCNGC 7 cut(s) 216, 550, 576, 608, 721, 724, 729
FspBI CTAG 2 cut(s) 32, 711
GlaI GCGC 3 cut(s) 214, 727, 924
GluI GCNGC 7 cut(s) 216, 550, 576, 608, 721, 724, 729
HaeIII GGCC 5 cut(s) 30, 137, 716, 731, 954
HapII CCGG 2 cut(s) 27, 327
HgaI GACGC 2 cut(s) 266, 466
HhaI GCGC 3 cut(s) 215, 728, 925
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 3 cut(s) 213, 726, 923
HinP1I GCGC 3 cut(s) 213, 726, 923
HinfI GANTC 3 cut(s) 67, 635, 680
HpaII CCGG 2 cut(s) 27, 327
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 115, 628, 904
Hpy188III TCNNGA 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 498, 565
HpyCH4III ACNGT 2 cut(s) 355, 644
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 2 cut(s) 799, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 516, 929
HpyF3I CTNAG 4 cut(s) 183, 390, 684, 788
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 3 cut(s) 213, 726, 923
KspI CCGCGG 1 cut(s) 724
Kzo9I GATC 2 cut(s) 736, 907
LmnI GCTCC 4 cut(s) 21, 78, 507, 885
LpnPI CCDG 8 cut(s) 40, 134, 161, 170, 340, 402, 524, 730
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 2 cut(s) 210, 301
MaeI CTAG 2 cut(s) 32, 711
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 738, 909
MboI GATC 2 cut(s) 736, 907
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 26, 902
MluCI AATT 2 cut(s) 869, 885
MluI ACGCGT 1 cut(s) 458
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 2 cut(s) 603, 888
MspA1I CMGCKG 1 cut(s) 723
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 2 cut(s) 27, 327
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 5 cut(s) 215, 260, 460, 723, 728
MwoI GCNNNNNNNGC 3 cut(s) 497, 516, 929
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 736, 907
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 67, 635
PkrI GCNGC 7 cut(s) 217, 551, 577, 609, 722, 725, 730
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 714
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 2 cut(s) 281, 858
RsaNI GTAC 2 cut(s) 280, 857
SacI GAGCTC 1 cut(s) 902
SacII CCGCGG 1 cut(s) 724
SaqAI TTAA 2 cut(s) 603, 888
SatI GCNGC 7 cut(s) 216, 550, 576, 608, 721, 724, 729
Sau3AI GATC 2 cut(s) 736, 907
Sau96I GGNCC 1 cut(s) 714
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 26, 902
SfaNI GCATC 2 cut(s) 210, 301
SfcI CTRYAG 2 cut(s) 383, 875
Sfr303I CCGCGG 1 cut(s) 724
SgrBI CCGCGG 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 2 cut(s) 869, 885
SspMI CTAG 2 cut(s) 32, 711
SstI GAGCTC 1 cut(s) 902
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 9, 31
TaaI ACNGT 2 cut(s) 355, 644
TaiI ACGT 1 cut(s) 867
TasI AATT 2 cut(s) 869, 885
TatI WGTACW 1 cut(s) 856
TauI GCSGC 6 cut(s) 218, 552, 610, 723, 726, 731
TfiI GAWTC 2 cut(s) 67, 635
Tru1I TTAA 2 cut(s) 603, 888
Tru9I TTAA 2 cut(s) 603, 888
TscAI CASTG 2 cut(s) 418, 981
TseI GCWGC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 80, 96, 555
TspGWI ACGGA 3 cut(s) 332, 581, 954
TspRI CASTG 2 cut(s) 418, 981
Vha464I CTTAAG 1 cut(s) 602
XapI RAATTY 1 cut(s) 869
XmaJI CCTAGG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 2 cut(s) 32, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.