Rh6BG054600
BHLH Family

Transcription factor bHLH84-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011699
Physical Location & Seq
Forward (+)
8869245 .. 8870469
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG054600.1

Sequence Viewer

Length: 807 bp
ATGGAAGCTCTAGCATTTATTCCAGATTTCGAGGACGAAGATTTGATCATGTCCCAGTTGCTTGCTAATTACTGTACTGTCACAAATGACCTGAATCATCAGGCTTCAATCTCTCAAATCCCATTTGCAAATTGTCCTAGCAGCCATGAAGGTTCAGCAGCGAAGAACATGGAAGGCATTGCTAATCTTTATTCTCGCAGAATTATGGCAACAAATTACCATAACCCTGAACCTTTTCATCCCTGGGATGCCAGCAGTACCACCAACTTTTTTTTCAGTCAAATTGAAGAAAATGTAGGCATGGACCAAGTAATGAGAAATTACAACGTGGAAGATCATGAAGTCGTGTCTGAGAATTCTAAGAAAAGGTCTTGCAGTACTTCTGTAGATCATGTCCAGAAGAACAAGAGGAATGTGAAATCAAAGAAGACTGATCAAAAGCCAGTCTTAACTAGAAACATTGCAGATGGTTGCAGCTCAGGGGATGATGAGCCCATGAATGCTAATTCTAAGCAGGATTTGAGTCCAAAAGCAAGAATCAGTAGGGGATTAGCCACTGATGCACAAAGCACATATGCAAGGAAAAGAAGAGATAAAATAAACGCAAGGCTGAGAATTCTGCAGAATCTAGTACCTAATGGAACAAAGGTTGATATCAGCACAATGCTCGAGGATGCTGTTGAGTATGTGAAGTTCTTAGAGCTTCAGATCAAGCTTTTAAGCTCTGATGAGCTGTGGATGTACGCTCCTGTCGTTAACAACGGAATAGGCATTGGAATTCATGACTTGCTCAACTCTCGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

5.83

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 194 - 234 2.7e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 195 - 241 1e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 355, 615, 777
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 5 cut(s) 76, 259, 379, 633, 743
AgsI TTSAA 2 cut(s) 108, 287
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 6 cut(s) 8, 477, 703, 715, 723, 733
AluI AGCT 6 cut(s) 8, 477, 703, 715, 723, 733
Ama87I CYCGRG 2 cut(s) 668, 798
ApeKI GCWGC 3 cut(s) 141, 158, 474
ApoI RAATTY 3 cut(s) 355, 615, 777
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 304
AvaI CYCGRG 2 cut(s) 668, 798
AvaII GGWCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 153, 170, 486
BccI CCATC 1 cut(s) 461
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 2 cut(s) 45, 433
BfaI CTAG 4 cut(s) 11, 138, 453, 629
BfmI CTRYAG 2 cut(s) 384, 620
BisI GCNGC 3 cut(s) 142, 159, 475
BlsI GCNGC 3 cut(s) 143, 160, 476
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 668, 798
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 238, 550, 664
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 242, 243
Bse1I ACTGG 2 cut(s) 55, 443
Bse3DI GCAATG 2 cut(s) 177, 459
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 242, 243
BseGI GGATG 5 cut(s) 238, 253, 490, 679, 744
BseMI GCAATG 2 cut(s) 177, 459
BseMII CTCAG 3 cut(s) 342, 492, 602
BseNI ACTGG 2 cut(s) 55, 443
BseXI GCAGC 3 cut(s) 153, 170, 486
BsiHKCI CYCGRG 2 cut(s) 668, 798
BslFI GGGAC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 505
BsoBI CYCGRG 2 cut(s) 668, 798
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 5 cut(s) 45, 334, 388, 433, 708
BspCNI CTCAG 3 cut(s) 343, 491, 603
BspHI TCATGA 2 cut(s) 337, 781
BspMAI CTGCAG 1 cut(s) 624
BsrDI GCAATG 2 cut(s) 177, 459
BsrI ACTGG 2 cut(s) 55, 443
BssECI CCNNGG 2 cut(s) 242, 243
BssMI GATC 5 cut(s) 45, 334, 388, 433, 708
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 74, 79
Bst6I CTCTTC 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 63, 253
BstDEI CTNAG 6 cut(s) 351, 360, 478, 510, 611, 697
BstF5I GGATG 5 cut(s) 238, 253, 490, 679, 744
BstKTI GATC 5 cut(s) 48, 337, 391, 436, 711
BstMBI GATC 5 cut(s) 45, 334, 388, 433, 708
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 384, 620
BstV1I GCAGC 3 cut(s) 153, 170, 486
BstV2I GAAGAC 1 cut(s) 434
BtsCI GGATG 5 cut(s) 238, 253, 490, 679, 744
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 63, 253
CciI TCATGA 2 cut(s) 337, 781
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 5 cut(s) 75, 258, 378, 632, 742
CviAII CATG 8 cut(s) 49, 146, 169, 301, 338, 392, 496, 782
CviQI GTAC 5 cut(s) 75, 258, 378, 632, 742
DdeI CTNAG 6 cut(s) 351, 360, 478, 510, 611, 697
DpnI GATC 5 cut(s) 47, 336, 390, 435, 710
DpnII GATC 5 cut(s) 45, 334, 388, 433, 708
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 2 cut(s) 668, 798
EcoRI GAATTC 3 cut(s) 355, 615, 777
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 495
FaeI CATG 8 cut(s) 52, 149, 172, 304, 341, 395, 499, 785
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 37
FatI CATG 8 cut(s) 48, 145, 168, 300, 337, 391, 495, 781
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 45, 433
Fnu4HI GCNGC 3 cut(s) 142, 159, 475
FokI GGATG 5 cut(s) 225, 260, 497, 686, 751
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 142, 159, 475
FspBI CTAG 4 cut(s) 11, 138, 453, 629
GluI GCNGC 3 cut(s) 142, 159, 475
Hin1II CATG 8 cut(s) 52, 149, 172, 304, 341, 395, 499, 785
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 4 cut(s) 94, 523, 537, 625
HpaI GTTAAC 1 cut(s) 757
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 3 cut(s) 352, 708, 727
Hpy188III TCNNGA 5 cut(s) 23, 338, 397, 782, 798
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 2 cut(s) 143, 167
HpyCH4III ACNGT 2 cut(s) 74, 79
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 7 cut(s) 128, 375, 464, 474, 563, 578, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 6 cut(s) 351, 360, 478, 510, 611, 697
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 8 cut(s) 52, 149, 172, 304, 341, 395, 499, 785
Ksp22I TGATCA 2 cut(s) 45, 433
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 45, 334, 388, 433, 708
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 3 cut(s) 153, 170, 486
LweI GCATC 3 cut(s) 238, 550, 664
MaeI CTAG 4 cut(s) 11, 138, 453, 629
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 79
MalI GATC 5 cut(s) 47, 336, 390, 435, 710
MboI GATC 5 cut(s) 45, 334, 388, 433, 708
MboII GAAGA 7 cut(s) 50, 175, 299, 344, 412, 439, 600
MhlI GDGCHC 1 cut(s) 495
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 4 cut(s) 25, 402, 664, 794
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 449, 719, 756
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 560
NdeI CATATG 1 cut(s) 574
NdeII GATC 5 cut(s) 45, 334, 388, 433, 708
NlaIII CATG 8 cut(s) 52, 149, 172, 304, 341, 395, 499, 785
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 2 cut(s) 668, 798
PagI TCATGA 2 cut(s) 337, 781
PasI CCCWGGG 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 94, 537, 625
PkrI GCNGC 3 cut(s) 143, 160, 476
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 668
PsrI GAACNNNNNNTAC 2 cut(s) 677, 709
PstI CTGCAG 1 cut(s) 624
RsaI GTAC 5 cut(s) 76, 259, 379, 633, 743
RsaNI GTAC 5 cut(s) 75, 258, 378, 632, 742
SaqAI TTAA 3 cut(s) 449, 719, 756
SatI GCNGC 3 cut(s) 142, 159, 475
Sau3AI GATC 5 cut(s) 45, 334, 388, 433, 708
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 3 cut(s) 238, 550, 664
SfcI CTRYAG 2 cut(s) 384, 620
Sfr274I CTCGAG 2 cut(s) 668, 798
SinI GGWCC 1 cut(s) 304
SlaI CTCGAG 2 cut(s) 668, 798
SmlI CTYRAG 2 cut(s) 668, 798
SmoI CTYRAG 2 cut(s) 668, 798
SspMI CTAG 4 cut(s) 11, 138, 453, 629
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 74, 79
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 30, 669, 799
TatI WGTACW 2 cut(s) 74, 377
TfiI GAWTC 3 cut(s) 94, 537, 625
Tru1I TTAA 3 cut(s) 449, 719, 756
Tru9I TTAA 3 cut(s) 449, 719, 756
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 141, 158, 474
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 5 cut(s) 162, 227, 354, 512, 770
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 3 cut(s) 355, 615, 777
XhoI CTCGAG 2 cut(s) 668, 798
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 4 cut(s) 11, 138, 453, 629
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.